Wall clock time and date at job start Wed Apr 1 2020 05:20:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86804 * 119.99729 * 2 1 4 4 H 1.48496 * 109.47243 * 274.98677 * 3 2 1 5 5 H 1.48497 * 109.46955 * 34.98634 * 3 2 1 6 6 H 1.48499 * 109.47129 * 154.98284 * 3 2 1 7 7 C 1.38814 * 120.00512 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00187 * 187.05609 * 7 2 1 9 9 N 1.36940 * 119.99637 * 7.05574 * 7 2 1 10 10 C 1.47019 * 125.65109 * 354.82175 * 9 7 2 11 11 C 1.54324 * 107.27391 * 178.97513 * 10 9 7 12 12 H 1.09000 * 110.71591 * 96.34346 * 11 10 9 13 13 N 1.46497 * 110.71906 * 219.44347 * 11 10 9 14 14 C 1.34775 * 119.99968 * 271.43058 * 13 11 10 15 15 O 1.21283 * 120.00064 * 359.72313 * 14 13 11 16 16 C 1.50701 * 120.00159 * 179.73067 * 14 13 11 17 17 C 1.53000 * 109.47143 * 180.02562 * 16 14 13 18 18 C 1.53005 * 109.46871 * 294.99550 * 17 16 14 19 19 C 1.53000 * 109.46871 * 179.97438 * 18 17 16 20 20 C 1.53006 * 109.46903 * 60.00425 * 19 18 17 21 21 C 1.53000 * 109.46864 * 299.99182 * 20 19 18 22 22 C 1.53000 * 109.47035 * 60.00528 * 21 20 19 23 23 C 1.55162 * 103.09946 * 337.89465 * 11 10 9 24 24 H 1.08996 * 111.00130 * 153.48478 * 23 11 10 25 25 N 1.46496 * 111.00102 * 277.34090 * 23 11 10 26 26 C 1.35306 * 125.87127 * 85.00580 * 25 23 11 27 27 C 1.35352 * 106.17790 * 180.02562 * 26 25 23 28 28 N 1.33779 * 106.49765 * 359.97438 * 27 26 25 29 29 N 1.28640 * 108.88066 * 359.74042 * 28 27 26 30 30 C 1.47425 * 125.64479 * 174.85967 * 9 7 2 31 31 H 0.96998 * 120.00468 * 0.02562 * 1 2 3 32 32 H 1.09001 * 109.88531 * 59.55113 * 10 9 7 33 33 H 1.09007 * 109.88024 * 298.39385 * 10 9 7 34 34 H 0.97004 * 120.00210 * 91.15881 * 13 11 10 35 35 H 1.09004 * 109.46607 * 299.99620 * 16 14 13 36 36 H 1.08994 * 109.47285 * 59.99377 * 16 14 13 37 37 H 1.08995 * 109.47345 * 54.99592 * 17 16 14 38 38 H 1.09001 * 109.46771 * 300.00178 * 18 17 16 39 39 H 1.08993 * 109.47191 * 60.00042 * 18 17 16 40 40 H 1.08995 * 109.47345 * 300.00042 * 19 18 17 41 41 H 1.08998 * 109.46921 * 179.97438 * 19 18 17 42 42 H 1.09003 * 109.46898 * 180.02562 * 20 19 18 43 43 H 1.08995 * 109.47433 * 59.99671 * 20 19 18 44 44 H 1.08995 * 109.47494 * 300.00451 * 21 20 19 45 45 H 1.08999 * 109.47226 * 180.02562 * 21 20 19 46 46 H 1.08994 * 109.47667 * 179.97438 * 22 21 20 47 47 H 1.09009 * 109.47117 * 59.99671 * 22 21 20 48 48 H 1.08000 * 126.91256 * 0.02562 * 26 25 23 49 49 H 1.08000 * 126.75696 * 179.97438 * 27 26 25 50 50 H 1.08998 * 110.36932 * 322.92846 * 30 9 7 51 51 H 1.09002 * 110.36709 * 85.14850 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3922 2.1074 -1.3947 5 1 1.5041 2.6199 0.8028 6 1 3.5963 1.4122 0.5921 7 6 2.0103 -1.2021 0.0005 8 1 3.0841 -1.2055 0.1154 9 7 1.3334 -2.3836 -0.1446 10 6 -0.1281 -2.5325 -0.2018 11 6 -0.4286 -4.0335 -0.3969 12 1 -0.6407 -4.5118 0.5594 13 7 -1.5442 -4.2221 -1.3274 14 6 -2.8102 -4.2458 -0.8657 15 8 -3.0255 -4.1160 0.3208 16 6 -3.9583 -4.4337 -1.8237 17 6 -5.2770 -4.4220 -1.0479 18 6 -5.3287 -5.6314 -0.1120 19 6 -6.6471 -5.6194 0.6643 20 6 -7.8181 -5.6845 -0.3184 21 6 -7.7664 -4.4752 -1.2542 22 6 -6.4480 -4.4870 -2.0304 23 6 0.8907 -4.5803 -1.0035 24 1 1.0173 -5.6382 -0.7739 25 7 0.9390 -4.3494 -2.4494 26 6 1.3585 -3.2159 -3.0577 27 6 1.2364 -3.4343 -4.3878 28 7 0.7550 -4.6748 -4.5265 29 7 0.5952 -5.1922 -3.3596 30 6 1.9496 -3.7172 -0.2687 31 1 -0.4851 0.8400 -0.0004 32 1 -0.5263 -1.9625 -1.0412 33 1 -0.5730 -2.1834 0.7302 34 1 -1.3721 -4.3260 -2.2764 35 1 -3.9591 -3.6236 -2.5530 36 1 -3.8484 -5.3873 -2.3400 37 1 -5.3456 -3.5057 -0.4616 38 1 -5.2601 -6.5477 -0.6983 39 1 -4.4948 -5.5848 0.5883 40 1 -6.7153 -4.7031 1.2506 41 1 -6.6842 -6.4812 1.3306 42 1 -8.7574 -5.6755 0.2346 43 1 -7.7499 -6.6008 -0.9047 44 1 -7.8345 -3.5589 -0.6679 45 1 -8.6008 -4.5212 -1.9539 46 1 -6.4112 -3.6258 -2.6974 47 1 -6.3798 -5.4034 -2.6168 48 1 1.7183 -2.3175 -2.5783 49 1 1.4797 -2.7433 -5.1813 50 1 2.8661 -3.6585 -0.8557 51 1 2.1575 -4.1322 0.7176 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001069893321.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:39 Heat of formation + Delta-G solvation = 74.311786 kcal Electronic energy + Delta-G solvation = -32115.585156 eV Core-core repulsion = 28052.253528 eV Total energy + Delta-G solvation = -4063.331628 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.94346 -39.95534 -38.53808 -37.51236 -34.17429 -33.40139 -32.68455 -31.74447 -30.72772 -30.54234 -29.09001 -27.93770 -26.68680 -24.83895 -22.78204 -22.61277 -22.20967 -21.85811 -20.61438 -20.12375 -19.83859 -19.68669 -17.67793 -17.13870 -16.80245 -15.85421 -15.44112 -15.34185 -15.16299 -14.79640 -14.46622 -14.22595 -14.13955 -14.09968 -13.89159 -13.56636 -13.39523 -13.01812 -12.58640 -12.43689 -12.33926 -12.13542 -12.05826 -11.80298 -11.59419 -11.35796 -11.32674 -11.13576 -11.10703 -10.96074 -10.88228 -10.64934 -10.54871 -10.46065 -10.26590 -10.24437 -10.05451 -10.01632 -9.75115 -9.39247 -8.96140 -8.84305 -8.64933 -7.16001 -5.94451 -3.32918 1.99736 2.64370 2.92744 2.93235 3.27390 3.33263 3.36360 3.40530 4.27992 4.50935 4.61070 4.68968 4.69666 4.75573 4.95957 4.99510 5.06770 5.08738 5.20821 5.30402 5.33116 5.42231 5.46617 5.47863 5.52763 5.57920 5.61542 5.64638 5.73400 5.74774 5.79576 5.83393 5.88209 5.98623 6.05524 6.09020 6.14303 6.15698 6.17645 6.18627 6.25850 6.46448 6.52840 6.53607 6.64529 7.04822 7.26805 7.34002 7.60563 7.74580 7.95737 8.50861 8.85790 8.93654 9.53799 10.13921 11.15557 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.010598 B = 0.003327 C = 0.002849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2641.485342 B = 8413.032243 C = 9825.651384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.004 3.996 3 Si 0.912 3.088 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.247 4.247 8 H 0.083 0.917 9 N -0.601 5.601 10 C 0.168 3.832 11 C 0.112 3.888 12 H 0.110 0.890 13 N -0.719 5.719 14 C 0.517 3.483 15 O -0.533 6.533 16 C -0.137 4.137 17 C -0.069 4.069 18 C -0.119 4.119 19 C -0.117 4.117 20 C -0.119 4.119 21 C -0.118 4.118 22 C -0.115 4.115 23 C 0.113 3.887 24 H 0.119 0.881 25 N -0.276 5.276 26 C -0.004 4.004 27 C -0.076 4.076 28 N -0.278 5.278 29 N -0.111 5.111 30 C 0.128 3.872 31 H 0.256 0.744 32 H 0.059 0.941 33 H 0.057 0.943 34 H 0.397 0.603 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.079 0.921 38 H 0.052 0.948 39 H 0.083 0.917 40 H 0.062 0.938 41 H 0.057 0.943 42 H 0.056 0.944 43 H 0.059 0.941 44 H 0.062 0.938 45 H 0.058 0.942 46 H 0.061 0.939 47 H 0.061 0.939 48 H 0.204 0.796 49 H 0.184 0.816 50 H 0.059 0.941 51 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.222 -10.010 -3.945 13.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.194 4.194 3 Si 0.742 3.258 4 H -0.213 1.213 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.374 4.374 8 H 0.101 0.899 9 N -0.329 5.329 10 C 0.042 3.958 11 C 0.005 3.995 12 H 0.128 0.872 13 N -0.371 5.371 14 C 0.303 3.697 15 O -0.409 6.409 16 C -0.177 4.177 17 C -0.088 4.088 18 C -0.157 4.157 19 C -0.155 4.155 20 C -0.157 4.157 21 C -0.156 4.156 22 C -0.153 4.153 23 C 0.009 3.991 24 H 0.137 0.863 25 N -0.069 5.069 26 C -0.156 4.156 27 C -0.233 4.233 28 N -0.144 5.144 29 N -0.090 5.090 30 C 0.000 4.000 31 H 0.067 0.933 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.232 0.768 35 H 0.109 0.891 36 H 0.108 0.892 37 H 0.098 0.902 38 H 0.071 0.929 39 H 0.102 0.898 40 H 0.081 0.919 41 H 0.076 0.924 42 H 0.075 0.925 43 H 0.077 0.923 44 H 0.081 0.919 45 H 0.077 0.923 46 H 0.080 0.920 47 H 0.080 0.920 48 H 0.220 0.780 49 H 0.201 0.799 50 H 0.077 0.923 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.000 -11.105 -3.328 14.677 hybrid contribution 1.019 2.049 -0.150 2.293 sum -7.981 -9.056 -3.478 12.562 Atomic orbital electron populations 1.69962 1.04966 1.25650 1.54867 1.24862 0.95644 0.97883 1.01029 0.86112 0.78735 0.83300 0.77662 1.21329 1.21633 1.20480 1.18996 0.91158 0.81778 1.45470 0.89912 1.44491 1.01151 1.00582 1.86688 1.21645 0.84439 0.87214 1.02467 1.22814 0.83035 1.00703 0.92994 0.87249 1.45922 1.05886 1.74208 1.11051 1.20594 0.83676 0.75767 0.89617 1.90668 1.84394 1.48902 1.16967 1.21744 0.93532 1.03971 0.98493 1.20891 0.91679 1.00275 0.95943 1.21705 0.98383 0.96796 0.98788 1.21501 0.94598 1.01729 0.97651 1.21552 0.98214 0.98268 0.97657 1.21508 0.97099 0.98661 0.98311 1.21602 0.94263 1.01797 0.97610 1.23390 0.99706 1.02145 0.73835 0.86345 1.47268 1.41000 1.10316 1.08299 1.24195 1.03541 0.94381 0.93488 1.23545 1.07744 0.96020 0.95965 1.75011 1.15959 1.08565 1.14913 1.78216 1.20945 1.17949 0.91859 1.21967 0.93650 0.86951 0.97383 0.93330 0.92317 0.92508 0.76820 0.89102 0.89190 0.90225 0.92891 0.89836 0.91946 0.92411 0.92478 0.92272 0.91950 0.92293 0.92004 0.92044 0.77957 0.79879 0.92267 0.92954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -24.69 10.36 55.49 0.57 -24.12 16 2 C 0.00 0.10 5.48 -17.43 -0.10 0.01 16 3 Si 0.91 20.36 29.56 -169.99 -5.02 15.33 16 4 H -0.29 -6.39 7.11 56.52 0.40 -5.98 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 6 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 7 C -0.25 -5.98 10.07 -15.06 -0.15 -6.13 16 8 H 0.08 1.94 7.84 -52.49 -0.41 1.53 16 9 N -0.60 -12.96 2.25 -169.93 -0.38 -13.35 16 10 C 0.17 3.67 4.77 -3.07 -0.01 3.66 16 11 C 0.11 1.94 3.13 -66.09 -0.21 1.73 16 12 H 0.11 1.91 7.63 -51.93 -0.40 1.52 16 13 N -0.72 -11.74 5.07 -52.03 -0.26 -12.00 16 14 C 0.52 8.43 7.55 -10.99 -0.08 8.35 16 15 O -0.53 -10.27 13.65 5.56 0.08 -10.19 16 16 C -0.14 -1.73 5.18 -27.88 -0.14 -1.88 16 17 C -0.07 -0.84 1.84 -90.62 -0.17 -1.00 16 18 C -0.12 -1.45 4.94 -26.73 -0.13 -1.58 16 19 C -0.12 -1.26 5.92 -26.73 -0.16 -1.41 16 20 C -0.12 -1.10 5.92 -26.73 -0.16 -1.26 16 21 C -0.12 -1.10 5.92 -26.73 -0.16 -1.25 16 22 C -0.12 -1.14 5.21 -26.73 -0.14 -1.28 16 23 C 0.11 1.74 4.08 -65.66 -0.27 1.47 16 24 H 0.12 1.54 8.14 -51.93 -0.42 1.11 16 25 N -0.28 -4.47 2.44 -52.57 -0.13 -4.60 16 26 C 0.00 -0.07 10.02 -17.05 -0.17 -0.24 16 27 C -0.08 -1.18 12.05 -17.73 -0.21 -1.40 16 28 N -0.28 -4.76 12.41 30.24 0.38 -4.38 16 29 N -0.11 -1.87 12.25 60.35 0.74 -1.13 16 30 C 0.13 2.17 6.20 -2.41 -0.01 2.15 16 31 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 32 H 0.06 1.46 7.18 -51.93 -0.37 1.08 16 33 H 0.06 1.48 7.61 -51.93 -0.40 1.08 16 34 H 0.40 6.37 6.77 -40.82 -0.28 6.10 16 35 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.08 1.13 7.95 -51.93 -0.41 0.72 16 38 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.08 1.23 5.95 -51.93 -0.31 0.92 16 40 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 45 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.06 0.57 8.14 -51.92 -0.42 0.15 16 48 H 0.20 3.74 6.83 -52.49 -0.36 3.38 16 49 H 0.18 2.29 8.06 -52.49 -0.42 1.87 16 50 H 0.06 0.97 7.86 -51.93 -0.41 0.56 16 51 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 395.42 15.07 5.96 5.96 Total: -1.00 -28.40 395.42 -8.74 -37.15 By element: Atomic # 1 Polarization: 19.80 SS G_CDS: -8.39 Total: 11.41 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: -2.28 Total: -0.07 kcal Atomic # 7 Polarization: -60.50 SS G_CDS: 0.92 Total: -59.58 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: 0.08 Total: -10.19 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -28.40 -8.74 -37.15 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001069893321.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.460 kcal (2) G-P(sol) polarization free energy of solvation -28.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds