Wall clock time and date at job start Wed Apr 1 2020 05:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86804 * 119.99729 * 2 1 4 4 H 1.48496 * 109.47243 * 274.98677 * 3 2 1 5 5 H 1.48497 * 109.46955 * 34.98634 * 3 2 1 6 6 H 1.48499 * 109.47129 * 154.98284 * 3 2 1 7 7 C 1.38814 * 120.00512 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00187 * 187.05609 * 7 2 1 9 9 N 1.36940 * 119.99637 * 7.05574 * 7 2 1 10 10 C 1.47019 * 125.65109 * 354.82175 * 9 7 2 11 11 C 1.54324 * 107.27391 * 178.97513 * 10 9 7 12 12 H 1.09000 * 110.71591 * 96.34346 * 11 10 9 13 13 N 1.46497 * 110.71906 * 219.44347 * 11 10 9 14 14 C 1.34775 * 119.99968 * 271.43058 * 13 11 10 15 15 O 1.21283 * 120.00064 * 359.72313 * 14 13 11 16 16 C 1.50701 * 120.00159 * 179.73067 * 14 13 11 17 17 C 1.53000 * 109.47143 * 180.02562 * 16 14 13 18 18 C 1.53005 * 109.46871 * 294.99550 * 17 16 14 19 19 C 1.53000 * 109.46871 * 179.97438 * 18 17 16 20 20 C 1.53006 * 109.46903 * 60.00425 * 19 18 17 21 21 C 1.53000 * 109.46864 * 299.99182 * 20 19 18 22 22 C 1.53000 * 109.47035 * 60.00528 * 21 20 19 23 23 C 1.55162 * 103.09946 * 337.89465 * 11 10 9 24 24 H 1.08996 * 111.00130 * 153.48478 * 23 11 10 25 25 N 1.46496 * 111.00102 * 277.34090 * 23 11 10 26 26 C 1.35306 * 125.87127 * 85.00580 * 25 23 11 27 27 C 1.35352 * 106.17790 * 180.02562 * 26 25 23 28 28 N 1.33779 * 106.49765 * 359.97438 * 27 26 25 29 29 N 1.28640 * 108.88066 * 359.74042 * 28 27 26 30 30 C 1.47425 * 125.64479 * 174.85967 * 9 7 2 31 31 H 0.96998 * 120.00468 * 0.02562 * 1 2 3 32 32 H 1.09001 * 109.88531 * 59.55113 * 10 9 7 33 33 H 1.09007 * 109.88024 * 298.39385 * 10 9 7 34 34 H 0.97004 * 120.00210 * 91.15881 * 13 11 10 35 35 H 1.09004 * 109.46607 * 299.99620 * 16 14 13 36 36 H 1.08994 * 109.47285 * 59.99377 * 16 14 13 37 37 H 1.08995 * 109.47345 * 54.99592 * 17 16 14 38 38 H 1.09001 * 109.46771 * 300.00178 * 18 17 16 39 39 H 1.08993 * 109.47191 * 60.00042 * 18 17 16 40 40 H 1.08995 * 109.47345 * 300.00042 * 19 18 17 41 41 H 1.08998 * 109.46921 * 179.97438 * 19 18 17 42 42 H 1.09003 * 109.46898 * 180.02562 * 20 19 18 43 43 H 1.08995 * 109.47433 * 59.99671 * 20 19 18 44 44 H 1.08995 * 109.47494 * 300.00451 * 21 20 19 45 45 H 1.08999 * 109.47226 * 180.02562 * 21 20 19 46 46 H 1.08994 * 109.47667 * 179.97438 * 22 21 20 47 47 H 1.09009 * 109.47117 * 59.99671 * 22 21 20 48 48 H 1.08000 * 126.91256 * 0.02562 * 26 25 23 49 49 H 1.08000 * 126.75696 * 179.97438 * 27 26 25 50 50 H 1.08998 * 110.36932 * 322.92846 * 30 9 7 51 51 H 1.09002 * 110.36709 * 85.14850 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3922 2.1074 -1.3947 5 1 1.5041 2.6199 0.8028 6 1 3.5963 1.4122 0.5921 7 6 2.0103 -1.2021 0.0005 8 1 3.0841 -1.2055 0.1154 9 7 1.3334 -2.3836 -0.1446 10 6 -0.1281 -2.5325 -0.2018 11 6 -0.4286 -4.0335 -0.3969 12 1 -0.6407 -4.5118 0.5594 13 7 -1.5442 -4.2221 -1.3274 14 6 -2.8102 -4.2458 -0.8657 15 8 -3.0255 -4.1160 0.3208 16 6 -3.9583 -4.4337 -1.8237 17 6 -5.2770 -4.4220 -1.0479 18 6 -5.3287 -5.6314 -0.1120 19 6 -6.6471 -5.6194 0.6643 20 6 -7.8181 -5.6845 -0.3184 21 6 -7.7664 -4.4752 -1.2542 22 6 -6.4480 -4.4870 -2.0304 23 6 0.8907 -4.5803 -1.0035 24 1 1.0173 -5.6382 -0.7739 25 7 0.9390 -4.3494 -2.4494 26 6 1.3585 -3.2159 -3.0577 27 6 1.2364 -3.4343 -4.3878 28 7 0.7550 -4.6748 -4.5265 29 7 0.5952 -5.1922 -3.3596 30 6 1.9496 -3.7172 -0.2687 31 1 -0.4851 0.8400 -0.0004 32 1 -0.5263 -1.9625 -1.0412 33 1 -0.5730 -2.1834 0.7302 34 1 -1.3721 -4.3260 -2.2764 35 1 -3.9591 -3.6236 -2.5530 36 1 -3.8484 -5.3873 -2.3400 37 1 -5.3456 -3.5057 -0.4616 38 1 -5.2601 -6.5477 -0.6983 39 1 -4.4948 -5.5848 0.5883 40 1 -6.7153 -4.7031 1.2506 41 1 -6.6842 -6.4812 1.3306 42 1 -8.7574 -5.6755 0.2346 43 1 -7.7499 -6.6008 -0.9047 44 1 -7.8345 -3.5589 -0.6679 45 1 -8.6008 -4.5212 -1.9539 46 1 -6.4112 -3.6258 -2.6974 47 1 -6.3798 -5.4034 -2.6168 48 1 1.7183 -2.3175 -2.5783 49 1 1.4797 -2.7433 -5.1813 50 1 2.8661 -3.6585 -0.8557 51 1 2.1575 -4.1322 0.7176 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001069893321.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:38 Heat of formation + Delta-G solvation = 58.595831 kcal Electronic energy + Delta-G solvation = -32116.266651 eV Core-core repulsion = 28052.253528 eV Total energy + Delta-G solvation = -4064.013123 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -44.25233 -41.24252 -39.76387 -38.74735 -35.78328 -34.81206 -33.69954 -33.38840 -31.84635 -31.56683 -30.64374 -29.36401 -27.93353 -26.50287 -24.13795 -23.54316 -23.48405 -23.01537 -22.01095 -21.47345 -21.18621 -20.60209 -19.23710 -18.55780 -18.25966 -17.26632 -16.84847 -16.46076 -16.31473 -16.22153 -15.89067 -15.66995 -15.34583 -15.00438 -14.98043 -14.91668 -14.74517 -14.31011 -14.02588 -13.89826 -13.45686 -13.34462 -13.12288 -12.97662 -12.89540 -12.80220 -12.73369 -12.54093 -12.51309 -12.24827 -12.05917 -11.97101 -11.89049 -11.85185 -11.82190 -11.33292 -11.28892 -11.09985 -10.91892 -10.76260 -10.60016 -10.25483 -10.10701 -9.00799 -7.88630 -5.26850 0.66387 1.34084 1.48624 1.49743 1.57952 1.61231 1.65224 2.08426 2.47057 3.15145 3.32430 3.40276 3.52715 3.66586 3.72729 3.76210 3.82840 3.93297 4.01852 4.20113 4.24479 4.27738 4.32400 4.43616 4.45978 4.48762 4.53584 4.60702 4.67788 4.68289 4.72538 4.80056 4.80879 4.84861 4.86385 5.04901 5.12392 5.21286 5.27362 5.30536 5.31332 5.34171 5.40555 5.42416 5.52114 5.57851 5.62749 5.68178 5.74034 6.08479 6.40320 7.00444 7.19284 7.54968 7.68093 8.28268 9.20290 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.010598 B = 0.003327 C = 0.002849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2641.485342 B = 8413.032243 C = 9825.651384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.053 4.053 3 Si 0.971 3.029 4 H -0.285 1.285 5 H -0.305 1.305 6 H -0.266 1.266 7 C -0.238 4.238 8 H 0.094 0.906 9 N -0.615 5.615 10 C 0.190 3.810 11 C 0.122 3.878 12 H 0.110 0.890 13 N -0.714 5.714 14 C 0.510 3.490 15 O -0.567 6.567 16 C -0.131 4.131 17 C -0.067 4.067 18 C -0.117 4.117 19 C -0.118 4.118 20 C -0.115 4.115 21 C -0.119 4.119 22 C -0.110 4.110 23 C 0.127 3.873 24 H 0.157 0.843 25 N -0.273 5.273 26 C -0.018 4.018 27 C -0.064 4.064 28 N -0.291 5.291 29 N -0.110 5.110 30 C 0.127 3.873 31 H 0.244 0.756 32 H 0.023 0.977 33 H 0.003 0.997 34 H 0.401 0.599 35 H 0.100 0.900 36 H 0.116 0.884 37 H 0.048 0.952 38 H 0.067 0.933 39 H 0.052 0.948 40 H 0.045 0.955 41 H 0.064 0.936 42 H 0.067 0.933 43 H 0.070 0.930 44 H 0.050 0.950 45 H 0.077 0.923 46 H 0.066 0.934 47 H 0.077 0.923 48 H 0.186 0.814 49 H 0.212 0.788 50 H 0.072 0.928 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.850 -12.039 -5.646 15.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.247 4.247 3 Si 0.800 3.200 4 H -0.212 1.212 5 H -0.233 1.233 6 H -0.190 1.190 7 C -0.367 4.367 8 H 0.112 0.888 9 N -0.342 5.342 10 C 0.063 3.937 11 C 0.014 3.986 12 H 0.128 0.872 13 N -0.366 5.366 14 C 0.299 3.701 15 O -0.446 6.446 16 C -0.170 4.170 17 C -0.086 4.086 18 C -0.154 4.154 19 C -0.155 4.155 20 C -0.152 4.152 21 C -0.157 4.157 22 C -0.148 4.148 23 C 0.024 3.976 24 H 0.174 0.826 25 N -0.067 5.067 26 C -0.170 4.170 27 C -0.221 4.221 28 N -0.158 5.158 29 N -0.089 5.089 30 C 0.001 3.999 31 H 0.054 0.946 32 H 0.041 0.959 33 H 0.021 0.979 34 H 0.236 0.764 35 H 0.118 0.882 36 H 0.134 0.866 37 H 0.067 0.933 38 H 0.086 0.914 39 H 0.071 0.929 40 H 0.064 0.936 41 H 0.083 0.917 42 H 0.086 0.914 43 H 0.089 0.911 44 H 0.069 0.931 45 H 0.095 0.905 46 H 0.084 0.916 47 H 0.096 0.904 48 H 0.203 0.797 49 H 0.229 0.771 50 H 0.090 0.910 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -8.589 -13.174 -5.052 16.518 hybrid contribution 0.950 2.655 0.414 2.850 sum -7.639 -10.520 -4.637 13.803 Atomic orbital electron populations 1.70193 1.06442 1.25228 1.57386 1.25569 0.96182 1.00856 1.02138 0.85173 0.77917 0.79636 0.77263 1.21185 1.23294 1.19023 1.19376 0.91731 0.82707 1.42842 0.88815 1.44616 1.01238 1.01935 1.86401 1.21140 0.84506 0.89824 0.98210 1.22499 0.84717 0.97499 0.93887 0.87201 1.45904 1.05778 1.73958 1.10983 1.21352 0.84353 0.74637 0.89794 1.90663 1.84842 1.50329 1.18782 1.21803 0.91907 1.05577 0.97739 1.20859 0.92596 0.98890 0.96254 1.21640 0.97962 0.97364 0.98434 1.21500 0.94805 1.01206 0.98023 1.21531 0.97696 0.98669 0.97342 1.21532 0.97367 0.98248 0.98538 1.21578 0.93291 1.02802 0.97092 1.23394 0.97232 1.03689 0.73307 0.82604 1.47305 1.40821 1.10124 1.08431 1.24048 1.04724 0.94161 0.94079 1.23984 1.06121 0.95790 0.96184 1.75019 1.16565 1.09184 1.14989 1.78195 1.20841 1.17916 0.91956 1.22169 0.94169 0.84771 0.98814 0.94618 0.95861 0.97916 0.76363 0.88190 0.86612 0.93303 0.91387 0.92945 0.93626 0.91732 0.91418 0.91123 0.93085 0.90459 0.91557 0.90441 0.79703 0.77098 0.91013 0.90719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -53.97 10.36 21.65 0.22 -53.75 16 2 C -0.05 -2.78 5.48 84.86 0.46 -2.32 16 3 Si 0.97 42.67 29.56 68.60 2.03 44.70 16 4 H -0.29 -12.32 7.11 99.48 0.71 -11.62 16 5 H -0.31 -14.09 7.11 99.48 0.71 -13.38 16 6 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 7 C -0.24 -11.61 10.07 84.03 0.85 -10.76 16 8 H 0.09 4.29 7.84 -2.91 -0.02 4.27 16 9 N -0.61 -26.70 2.25 -691.55 -1.55 -28.25 16 10 C 0.19 8.65 4.77 86.73 0.41 9.07 16 11 C 0.12 4.24 3.13 46.18 0.14 4.38 16 12 H 0.11 3.87 7.63 -2.39 -0.02 3.86 16 13 N -0.71 -23.29 5.07 -436.91 -2.22 -25.50 16 14 C 0.51 16.93 7.55 87.66 0.66 17.59 16 15 O -0.57 -22.97 13.65 -3.04 -0.04 -23.02 16 16 C -0.13 -3.19 5.18 29.85 0.15 -3.04 16 17 C -0.07 -1.61 1.84 -10.79 -0.02 -1.63 16 18 C -0.12 -2.80 4.94 30.60 0.15 -2.65 16 19 C -0.12 -2.49 5.92 30.60 0.18 -2.31 16 20 C -0.11 -1.90 5.92 30.60 0.18 -1.72 16 21 C -0.12 -2.01 5.92 30.59 0.18 -1.83 16 22 C -0.11 -1.98 5.21 30.59 0.16 -1.83 16 23 C 0.13 3.66 4.08 46.46 0.19 3.85 16 24 H 0.16 3.45 8.14 -2.39 -0.02 3.43 16 25 N -0.27 -8.36 2.44 -320.24 -0.78 -9.14 16 26 C -0.02 -0.59 10.02 83.49 0.84 0.24 16 27 C -0.06 -1.87 12.05 83.73 1.01 -0.86 16 28 N -0.29 -9.29 12.41 -58.25 -0.72 -10.02 16 29 N -0.11 -3.46 12.25 37.02 0.45 -3.01 16 30 C 0.13 4.06 6.20 86.93 0.54 4.60 16 31 H 0.24 13.96 8.31 -92.71 -0.77 13.18 16 32 H 0.02 1.22 7.18 -2.39 -0.02 1.20 16 33 H 0.00 0.15 7.61 -2.38 -0.02 0.13 16 34 H 0.40 12.49 6.77 -92.71 -0.63 11.86 16 35 H 0.10 2.29 8.14 -2.38 -0.02 2.27 16 36 H 0.12 2.26 8.14 -2.39 -0.02 2.24 16 37 H 0.05 1.47 7.95 -2.39 -0.02 1.45 16 38 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.05 1.59 5.95 -2.39 -0.01 1.58 16 40 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 44 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 45 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 46 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 47 H 0.08 1.18 8.14 -2.38 -0.02 1.16 16 48 H 0.19 6.78 6.83 -2.91 -0.02 6.76 16 49 H 0.21 4.72 8.06 -2.91 -0.02 4.70 16 50 H 0.07 2.17 7.86 -2.39 -0.02 2.15 16 51 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 Total: -1.00 -65.04 395.42 3.78 -61.25 By element: Atomic # 1 Polarization: 35.63 SS G_CDS: 0.30 Total: 35.93 kcal Atomic # 6 Polarization: 4.70 SS G_CDS: 6.09 Total: 10.80 kcal Atomic # 7 Polarization: -125.07 SS G_CDS: -4.59 Total: -129.66 kcal Atomic # 8 Polarization: -22.97 SS G_CDS: -0.04 Total: -23.02 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Total: -65.04 3.78 -61.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001069893321.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.847 kcal (2) G-P(sol) polarization free energy of solvation -65.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds