Wall clock time and date at job start Wed Apr 1 2020 04:48:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99966 * 2 1 4 4 H 1.48506 * 109.46970 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47292 * 299.99875 * 3 2 1 6 6 H 1.48505 * 109.47231 * 60.00068 * 3 2 1 7 7 C 1.37879 * 120.00427 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00571 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99634 * 359.97438 * 7 2 1 10 10 N 1.46894 * 109.47287 * 180.02562 * 9 7 2 11 11 C 1.46957 * 111.00246 * 293.80392 * 10 9 7 12 12 C 1.53051 * 109.36465 * 176.81096 * 11 10 9 13 13 N 1.46954 * 109.36376 * 58.39998 * 12 11 10 14 14 C 1.38589 * 110.99882 * 176.81157 * 13 12 11 15 15 N 1.31217 * 126.47650 * 98.41316 * 14 13 12 16 16 N 1.28525 * 109.86079 * 179.97438 * 15 14 13 17 17 C 1.30291 * 110.05332 * 0.02562 * 16 15 14 18 18 C 1.50706 * 126.34298 * 179.97438 * 17 16 15 19 19 O 1.42894 * 115.54912 * 148.73841 * 18 17 16 20 20 C 1.52995 * 117.50069 * 3.02213 * 18 17 16 21 21 C 1.52996 * 60.00120 * 252.51571 * 20 18 17 22 22 N 1.36459 * 126.46942 * 278.10503 * 14 13 12 23 23 C 1.46494 * 127.13758 * 0.03101 * 22 14 13 24 24 C 1.52993 * 109.47359 * 271.10713 * 23 22 14 25 25 C 1.53003 * 117.49950 * 242.60508 * 24 23 22 26 26 C 1.52997 * 59.99890 * 252.50765 * 25 24 23 27 27 C 1.46957 * 110.88327 * 300.67434 * 13 12 11 28 28 C 1.46957 * 111.00320 * 169.99948 * 10 9 7 29 29 H 0.96998 * 119.99681 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.47244 * 59.99864 * 9 7 2 31 31 H 1.08999 * 109.47654 * 300.00313 * 9 7 2 32 32 H 1.09010 * 109.48515 * 296.77681 * 11 10 9 33 33 H 1.08997 * 109.48996 * 56.83776 * 11 10 9 34 34 H 1.08998 * 109.48487 * 298.43073 * 12 11 10 35 35 H 1.09001 * 109.50328 * 178.37858 * 12 11 10 36 36 H 0.96706 * 114.00265 * 296.12784 * 19 18 17 37 37 H 1.09003 * 117.50043 * 0.02562 * 20 18 17 38 38 H 1.09003 * 117.50042 * 145.02205 * 20 18 17 39 39 H 1.09000 * 117.49918 * 252.50952 * 21 20 18 40 40 H 1.09003 * 117.50045 * 107.49150 * 21 20 18 41 41 H 1.08996 * 109.47265 * 31.10852 * 23 22 14 42 42 H 1.09003 * 109.46882 * 151.10559 * 23 22 14 43 43 H 1.09003 * 115.55328 * 28.31377 * 24 23 22 44 44 H 1.08993 * 117.50182 * 0.02562 * 25 24 23 45 45 H 1.09011 * 117.49762 * 145.01973 * 25 24 23 46 46 H 1.09000 * 117.50022 * 252.50678 * 26 25 24 47 47 H 1.09004 * 117.49847 * 107.49083 * 26 25 24 48 48 H 1.08993 * 109.48946 * 299.36044 * 27 13 12 49 49 H 1.09000 * 109.48836 * 179.28492 * 27 13 12 50 50 H 1.09000 * 109.48998 * 303.15862 * 28 10 9 51 51 H 1.09007 * 109.48492 * 63.22185 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2057 -3.6156 -0.0005 11 6 2.9688 -3.6562 -1.2558 12 6 4.0043 -4.7809 -1.1841 13 7 3.3195 -6.0592 -0.9459 14 6 4.2201 -7.1126 -0.9458 15 7 4.7491 -7.6865 0.1089 16 7 5.5413 -8.6296 -0.2584 17 6 5.5649 -8.7123 -1.5585 18 6 6.3700 -9.6887 -2.3768 19 8 5.7825 -10.0840 -3.6180 20 6 7.1952 -10.7321 -1.6211 21 6 7.8942 -9.5666 -2.3238 22 7 4.7196 -7.7527 -2.0426 23 6 4.4162 -7.4682 -3.4472 24 6 3.1974 -8.2848 -3.8813 25 6 3.3979 -9.3166 -4.9931 26 6 2.6328 -8.0228 -5.2789 27 6 2.5565 -6.0187 0.3094 28 6 1.5210 -4.8940 0.2377 29 1 -0.4849 0.8400 -0.0004 30 1 0.6241 -2.5567 -0.8903 31 1 0.6247 -2.5571 0.8896 32 1 2.2896 -3.8396 -2.0885 33 1 3.4767 -2.7031 -1.4035 34 1 4.6998 -4.5834 -0.3684 35 1 4.5522 -4.8317 -2.1250 36 1 4.9513 -10.5691 -3.5229 37 1 7.1555 -10.7127 -0.5320 38 1 7.2899 -11.7207 -2.0705 39 1 8.4489 -9.7884 -3.2355 40 1 8.3147 -8.7802 -1.6970 41 1 4.2024 -6.4059 -3.5648 42 1 5.2727 -7.7371 -4.0656 43 1 2.4887 -8.5287 -3.0898 44 1 4.3981 -9.4139 -5.4151 45 1 2.8211 -10.2397 -4.9331 46 1 1.5527 -8.0947 -5.4070 47 1 3.1296 -7.2686 -5.8892 48 1 3.2355 -5.8353 1.1420 49 1 2.0485 -6.9718 0.4571 50 1 0.9734 -4.8433 1.1788 51 1 0.8254 -5.0914 -0.5780 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001646949482.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:48:45 Heat of formation + Delta-G solvation = 114.143603 kcal Electronic energy + Delta-G solvation = -31705.788795 eV Core-core repulsion = 27644.184404 eV Total energy + Delta-G solvation = -4061.604391 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.12764 -39.10845 -38.59684 -37.97742 -35.31362 -34.52109 -34.33980 -32.53515 -30.67604 -29.93498 -28.12547 -27.44148 -25.13496 -24.12954 -23.14141 -22.89407 -22.78460 -22.07268 -21.52978 -20.77997 -20.57848 -19.24125 -18.24308 -17.11963 -16.49133 -16.48107 -16.24876 -15.62321 -15.40139 -15.11717 -14.71724 -14.69131 -14.40040 -14.27191 -14.07318 -13.63997 -13.54688 -13.49343 -13.14547 -12.32945 -12.21059 -12.12243 -11.96851 -11.88474 -11.83806 -11.66587 -11.37788 -11.20340 -11.01094 -10.91410 -10.87048 -10.79555 -10.66233 -10.53965 -10.51543 -10.45194 -10.29977 -10.13680 -9.84040 -9.37372 -9.19986 -8.48405 -8.35898 -7.33322 -6.06710 -4.08380 1.54091 2.04173 2.66346 3.08195 3.28369 3.36242 3.38895 3.40591 3.52947 3.69781 3.94496 4.28450 4.33649 4.38636 4.47046 4.58967 4.60511 4.76600 4.79121 4.90915 4.98741 5.12244 5.18913 5.25380 5.27609 5.29109 5.32602 5.37467 5.46260 5.53046 5.53562 5.61701 5.68289 5.75909 5.76863 5.78009 5.81990 5.84090 5.95686 6.07795 6.32616 6.39855 6.49652 6.53113 6.78390 6.98200 7.22394 7.23438 7.28573 7.74558 8.01330 8.11899 8.47593 8.66738 8.99212 9.56259 11.04129 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.016017 B = 0.002548 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.760740 B =10988.394191 C =11578.435919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.897 3.103 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.508 4.508 8 H 0.063 0.937 9 C 0.194 3.806 10 N -0.537 5.537 11 C 0.070 3.930 12 C 0.065 3.935 13 N -0.460 5.460 14 C 0.369 3.631 15 N -0.315 5.315 16 N -0.273 5.273 17 C 0.177 3.823 18 C 0.127 3.873 19 O -0.514 6.514 20 C -0.168 4.168 21 C -0.135 4.135 22 N -0.458 5.458 23 C 0.145 3.855 24 C -0.168 4.168 25 C -0.178 4.178 26 C -0.164 4.164 27 C 0.078 3.922 28 C 0.056 3.944 29 H 0.261 0.739 30 H -0.007 1.007 31 H 0.032 0.968 32 H 0.032 0.968 33 H 0.095 0.905 34 H 0.056 0.944 35 H 0.069 0.931 36 H 0.382 0.618 37 H 0.115 0.885 38 H 0.109 0.891 39 H 0.110 0.890 40 H 0.108 0.892 41 H 0.098 0.902 42 H 0.102 0.898 43 H 0.108 0.892 44 H 0.107 0.893 45 H 0.094 0.906 46 H 0.098 0.902 47 H 0.098 0.902 48 H 0.064 0.936 49 H 0.076 0.924 50 H 0.081 0.919 51 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.499 -22.174 -10.879 26.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.725 3.275 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.547 4.547 8 H 0.082 0.918 9 C 0.069 3.931 10 N -0.263 5.263 11 C -0.059 4.059 12 C -0.062 4.062 13 N -0.185 5.185 14 C 0.013 3.987 15 N -0.160 5.160 16 N -0.114 5.114 17 C -0.091 4.091 18 C 0.082 3.918 19 O -0.320 6.320 20 C -0.206 4.206 21 C -0.173 4.173 22 N -0.151 5.151 23 C 0.023 3.977 24 C -0.187 4.187 25 C -0.215 4.215 26 C -0.202 4.202 27 C -0.049 4.049 28 C -0.073 4.073 29 H 0.071 0.929 30 H 0.011 0.989 31 H 0.050 0.950 32 H 0.051 0.949 33 H 0.113 0.887 34 H 0.074 0.926 35 H 0.087 0.913 36 H 0.232 0.768 37 H 0.133 0.867 38 H 0.127 0.873 39 H 0.128 0.872 40 H 0.127 0.873 41 H 0.117 0.883 42 H 0.120 0.880 43 H 0.127 0.873 44 H 0.125 0.875 45 H 0.112 0.888 46 H 0.117 0.883 47 H 0.116 0.884 48 H 0.083 0.917 49 H 0.094 0.906 50 H 0.100 0.900 51 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 11.128 -22.005 -9.697 26.497 hybrid contribution -0.758 1.037 -1.262 1.800 sum 10.370 -20.968 -10.959 25.832 Atomic orbital electron populations 1.69964 1.06065 1.26725 1.50946 1.24987 0.94857 0.99331 0.95390 0.86457 0.80079 0.83441 0.77535 1.19656 1.21121 1.20976 1.21178 0.93492 0.89893 1.50136 0.91833 1.19716 0.89946 0.87102 0.96308 1.62303 1.28348 1.02852 1.32774 1.22001 0.95213 0.96923 0.91736 1.22424 0.96722 0.86303 1.00782 1.59012 1.20788 1.00881 1.37864 1.22702 0.95802 0.97106 0.83101 1.74726 1.09966 1.08349 1.22951 1.73919 1.15573 1.14361 1.07587 1.23937 0.98190 0.94988 0.91966 1.18740 0.89996 0.96975 0.86077 1.86515 1.42777 1.76818 1.25871 1.23645 1.01088 0.94594 1.01323 1.23325 0.89795 1.01204 1.02941 1.46102 1.34886 1.25974 1.08128 1.21475 0.97801 1.01041 0.77431 1.22486 0.99631 1.03205 0.93368 1.23191 1.02456 0.93682 1.02187 1.22936 1.00576 0.99665 0.97000 1.22176 0.95611 0.99297 0.87847 1.22133 0.94443 0.89531 1.01166 0.92935 0.98929 0.94987 0.94945 0.88734 0.92575 0.91280 0.76810 0.86693 0.87270 0.87204 0.87328 0.88340 0.87991 0.87344 0.87476 0.88785 0.88325 0.88390 0.91718 0.90572 0.90034 0.94941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.27 13.29 55.43 0.74 -25.53 16 2 C 0.06 1.55 5.46 -17.82 -0.10 1.46 16 3 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 16 4 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.51 -13.92 8.47 -34.44 -0.29 -14.22 16 8 H 0.06 1.72 7.13 -52.49 -0.37 1.35 16 9 C 0.19 4.92 4.72 -4.98 -0.02 4.90 16 10 N -0.54 -11.28 4.70 -235.91 -1.11 -12.39 16 11 C 0.07 1.30 5.43 -3.77 -0.02 1.28 16 12 C 0.06 1.01 5.55 -3.77 -0.02 0.99 16 13 N -0.46 -7.05 4.73 -174.36 -0.82 -7.87 16 14 C 0.37 5.58 6.87 -318.85 -2.19 3.39 16 15 N -0.32 -5.34 11.47 30.32 0.35 -4.99 16 16 N -0.27 -4.20 11.76 32.99 0.39 -3.81 16 17 C 0.18 2.20 7.52 -154.02 -1.16 1.05 16 18 C 0.13 1.15 3.11 -91.77 -0.29 0.86 16 19 O -0.51 -3.83 10.29 -35.23 -0.36 -4.19 16 20 C -0.17 -1.27 10.09 -26.74 -0.27 -1.54 16 21 C -0.13 -1.04 10.18 -26.73 -0.27 -1.31 16 22 N -0.46 -5.67 2.81 -114.09 -0.32 -5.99 16 23 C 0.15 1.40 5.72 -4.05 -0.02 1.37 16 24 C -0.17 -1.43 5.90 -90.62 -0.53 -1.96 16 25 C -0.18 -1.12 8.06 -26.73 -0.22 -1.33 16 26 C -0.16 -1.19 10.25 -26.73 -0.27 -1.46 16 27 C 0.08 1.24 5.15 -3.77 -0.02 1.23 16 28 C 0.06 1.00 5.61 -3.77 -0.02 0.98 16 29 H 0.26 7.21 8.31 -40.82 -0.34 6.88 16 30 H -0.01 -0.19 8.12 -51.93 -0.42 -0.61 16 31 H 0.03 0.87 8.03 -51.93 -0.42 0.45 16 32 H 0.03 0.61 8.14 -51.92 -0.42 0.18 16 33 H 0.09 1.87 6.79 -51.93 -0.35 1.51 16 34 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.07 0.94 7.23 -51.93 -0.38 0.56 16 36 H 0.38 2.17 7.72 45.56 0.35 2.52 16 37 H 0.11 1.00 7.89 -51.93 -0.41 0.59 16 38 H 0.11 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.11 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.10 0.99 7.24 -51.93 -0.38 0.62 16 42 H 0.10 0.88 6.89 -51.93 -0.36 0.52 16 43 H 0.11 1.15 8.14 -51.93 -0.42 0.72 16 44 H 0.11 0.64 7.01 -51.93 -0.36 0.28 16 45 H 0.09 0.51 8.14 -51.92 -0.42 0.09 16 46 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 47 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 48 H 0.06 1.13 8.00 -51.93 -0.42 0.71 16 49 H 0.08 1.14 8.13 -51.93 -0.42 0.72 16 50 H 0.08 1.42 8.07 -51.93 -0.42 1.00 16 51 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 405.96 15.07 6.12 6.12 Total: -1.00 -31.51 405.96 -13.48 -44.99 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -7.72 Total: 1.70 kcal Atomic # 6 Polarization: 1.40 SS G_CDS: -5.72 Total: -4.32 kcal Atomic # 7 Polarization: -59.81 SS G_CDS: -0.78 Total: -60.59 kcal Atomic # 8 Polarization: -3.83 SS G_CDS: -0.36 Total: -4.19 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -31.51 -13.48 -44.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646949482.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.134 kcal (2) G-P(sol) polarization free energy of solvation -31.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds