Wall clock time and date at job start Wed Apr 1 2020 04:48:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99966 * 2 1 4 4 H 1.48506 * 109.46970 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47292 * 299.99875 * 3 2 1 6 6 H 1.48505 * 109.47231 * 60.00068 * 3 2 1 7 7 C 1.37879 * 120.00427 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00571 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99634 * 359.97438 * 7 2 1 10 10 N 1.46894 * 109.47287 * 180.02562 * 9 7 2 11 11 C 1.46957 * 111.00246 * 293.80392 * 10 9 7 12 12 C 1.53051 * 109.36465 * 176.81096 * 11 10 9 13 13 N 1.46954 * 109.36376 * 58.39998 * 12 11 10 14 14 C 1.38589 * 110.99882 * 176.81157 * 13 12 11 15 15 N 1.31217 * 126.47650 * 98.41316 * 14 13 12 16 16 N 1.28525 * 109.86079 * 179.97438 * 15 14 13 17 17 C 1.30291 * 110.05332 * 0.02562 * 16 15 14 18 18 C 1.50706 * 126.34298 * 179.97438 * 17 16 15 19 19 O 1.42894 * 115.54912 * 148.73841 * 18 17 16 20 20 C 1.52995 * 117.50069 * 3.02213 * 18 17 16 21 21 C 1.52996 * 60.00120 * 252.51571 * 20 18 17 22 22 N 1.36459 * 126.46942 * 278.10503 * 14 13 12 23 23 C 1.46494 * 127.13758 * 0.03101 * 22 14 13 24 24 C 1.52993 * 109.47359 * 271.10713 * 23 22 14 25 25 C 1.53003 * 117.49950 * 242.60508 * 24 23 22 26 26 C 1.52997 * 59.99890 * 252.50765 * 25 24 23 27 27 C 1.46957 * 110.88327 * 300.67434 * 13 12 11 28 28 C 1.46957 * 111.00320 * 169.99948 * 10 9 7 29 29 H 0.96998 * 119.99681 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.47244 * 59.99864 * 9 7 2 31 31 H 1.08999 * 109.47654 * 300.00313 * 9 7 2 32 32 H 1.09010 * 109.48515 * 296.77681 * 11 10 9 33 33 H 1.08997 * 109.48996 * 56.83776 * 11 10 9 34 34 H 1.08998 * 109.48487 * 298.43073 * 12 11 10 35 35 H 1.09001 * 109.50328 * 178.37858 * 12 11 10 36 36 H 0.96706 * 114.00265 * 296.12784 * 19 18 17 37 37 H 1.09003 * 117.50043 * 0.02562 * 20 18 17 38 38 H 1.09003 * 117.50042 * 145.02205 * 20 18 17 39 39 H 1.09000 * 117.49918 * 252.50952 * 21 20 18 40 40 H 1.09003 * 117.50045 * 107.49150 * 21 20 18 41 41 H 1.08996 * 109.47265 * 31.10852 * 23 22 14 42 42 H 1.09003 * 109.46882 * 151.10559 * 23 22 14 43 43 H 1.09003 * 115.55328 * 28.31377 * 24 23 22 44 44 H 1.08993 * 117.50182 * 0.02562 * 25 24 23 45 45 H 1.09011 * 117.49762 * 145.01973 * 25 24 23 46 46 H 1.09000 * 117.50022 * 252.50678 * 26 25 24 47 47 H 1.09004 * 117.49847 * 107.49083 * 26 25 24 48 48 H 1.08993 * 109.48946 * 299.36044 * 27 13 12 49 49 H 1.09000 * 109.48836 * 179.28492 * 27 13 12 50 50 H 1.09000 * 109.48998 * 303.15862 * 28 10 9 51 51 H 1.09007 * 109.48492 * 63.22185 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2057 -3.6156 -0.0005 11 6 2.9688 -3.6562 -1.2558 12 6 4.0043 -4.7809 -1.1841 13 7 3.3195 -6.0592 -0.9459 14 6 4.2201 -7.1126 -0.9458 15 7 4.7491 -7.6865 0.1089 16 7 5.5413 -8.6296 -0.2584 17 6 5.5649 -8.7123 -1.5585 18 6 6.3700 -9.6887 -2.3768 19 8 5.7825 -10.0840 -3.6180 20 6 7.1952 -10.7321 -1.6211 21 6 7.8942 -9.5666 -2.3238 22 7 4.7196 -7.7527 -2.0426 23 6 4.4162 -7.4682 -3.4472 24 6 3.1974 -8.2848 -3.8813 25 6 3.3979 -9.3166 -4.9931 26 6 2.6328 -8.0228 -5.2789 27 6 2.5565 -6.0187 0.3094 28 6 1.5210 -4.8940 0.2377 29 1 -0.4849 0.8400 -0.0004 30 1 0.6241 -2.5567 -0.8903 31 1 0.6247 -2.5571 0.8896 32 1 2.2896 -3.8396 -2.0885 33 1 3.4767 -2.7031 -1.4035 34 1 4.6998 -4.5834 -0.3684 35 1 4.5522 -4.8317 -2.1250 36 1 4.9513 -10.5691 -3.5229 37 1 7.1555 -10.7127 -0.5320 38 1 7.2899 -11.7207 -2.0705 39 1 8.4489 -9.7884 -3.2355 40 1 8.3147 -8.7802 -1.6970 41 1 4.2024 -6.4059 -3.5648 42 1 5.2727 -7.7371 -4.0656 43 1 2.4887 -8.5287 -3.0898 44 1 4.3981 -9.4139 -5.4151 45 1 2.8211 -10.2397 -4.9331 46 1 1.5527 -8.0947 -5.4070 47 1 3.1296 -7.2686 -5.8892 48 1 3.2355 -5.8353 1.1420 49 1 2.0485 -6.9718 0.4571 50 1 0.9734 -4.8433 1.1788 51 1 0.8254 -5.0914 -0.5780 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001646949482.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:48:44 Heat of formation + Delta-G solvation = 94.991223 kcal Electronic energy + Delta-G solvation = -31706.619304 eV Core-core repulsion = 27644.184404 eV Total energy + Delta-G solvation = -4062.434900 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -44.19719 -40.39824 -39.40175 -38.64382 -36.85369 -35.39529 -35.06779 -34.55398 -32.10730 -31.25753 -29.46118 -28.65127 -26.84298 -25.18591 -24.38835 -23.78687 -23.47087 -23.32312 -22.66823 -21.79750 -21.41594 -20.61835 -19.05658 -18.49724 -18.15760 -17.45598 -17.43018 -16.72175 -16.31850 -16.12967 -15.99754 -15.93140 -15.66183 -15.45529 -15.31401 -15.11060 -14.83004 -14.30908 -14.13733 -13.98715 -13.52302 -13.18852 -13.04668 -12.94178 -12.78487 -12.69093 -12.65411 -12.42479 -12.37280 -12.34083 -12.28265 -12.20355 -11.90580 -11.73007 -11.66141 -11.55366 -11.26577 -11.20397 -11.00933 -10.96032 -10.62686 -10.39083 -9.56660 -9.09146 -8.21024 -6.30856 0.51525 1.04512 1.40791 1.42380 1.55141 1.56804 2.39749 2.40671 2.51977 2.77214 2.88404 3.10701 3.18246 3.23710 3.56950 3.60577 3.68024 3.78189 3.94796 3.96009 3.97166 3.97815 4.12239 4.20360 4.21943 4.25805 4.33470 4.38543 4.52408 4.58358 4.65905 4.69212 4.70590 4.81979 4.84773 4.89919 4.92918 4.94493 4.99501 5.01206 5.16623 5.18176 5.19904 5.22638 5.28887 5.42473 5.51188 5.63933 6.02237 6.07261 6.26822 6.45775 6.55259 6.84691 7.38948 7.56670 8.90298 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.016017 B = 0.002548 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.760740 B =10988.394191 C =11578.435919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.003 3.997 3 Si 0.968 3.032 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.280 1.280 7 C -0.522 4.522 8 H 0.063 0.937 9 C 0.211 3.789 10 N -0.547 5.547 11 C 0.075 3.925 12 C 0.078 3.922 13 N -0.454 5.454 14 C 0.356 3.644 15 N -0.347 5.347 16 N -0.305 5.305 17 C 0.193 3.807 18 C 0.114 3.886 19 O -0.507 6.507 20 C -0.157 4.157 21 C -0.126 4.126 22 N -0.451 5.451 23 C 0.145 3.855 24 C -0.181 4.181 25 C -0.154 4.154 26 C -0.165 4.165 27 C 0.091 3.909 28 C 0.060 3.940 29 H 0.264 0.736 30 H -0.033 1.033 31 H 0.006 0.994 32 H 0.031 0.969 33 H 0.081 0.919 34 H 0.042 0.958 35 H 0.095 0.905 36 H 0.391 0.609 37 H 0.100 0.900 38 H 0.133 0.867 39 H 0.131 0.869 40 H 0.099 0.901 41 H 0.093 0.907 42 H 0.118 0.882 43 H 0.086 0.914 44 H 0.117 0.883 45 H 0.105 0.895 46 H 0.097 0.903 47 H 0.105 0.895 48 H 0.050 0.950 49 H 0.089 0.911 50 H 0.082 0.918 51 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.381 -23.512 -12.951 29.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.195 4.195 3 Si 0.792 3.208 4 H -0.187 1.187 5 H -0.203 1.203 6 H -0.206 1.206 7 C -0.560 4.560 8 H 0.081 0.919 9 C 0.085 3.915 10 N -0.272 5.272 11 C -0.053 4.053 12 C -0.049 4.049 13 N -0.179 5.179 14 C -0.001 4.001 15 N -0.192 5.192 16 N -0.146 5.146 17 C -0.075 4.075 18 C 0.069 3.931 19 O -0.313 6.313 20 C -0.195 4.195 21 C -0.164 4.164 22 N -0.143 5.143 23 C 0.024 3.976 24 C -0.200 4.200 25 C -0.191 4.191 26 C -0.203 4.203 27 C -0.037 4.037 28 C -0.068 4.068 29 H 0.073 0.927 30 H -0.015 1.015 31 H 0.024 0.976 32 H 0.049 0.951 33 H 0.100 0.900 34 H 0.060 0.940 35 H 0.113 0.887 36 H 0.242 0.758 37 H 0.119 0.881 38 H 0.151 0.849 39 H 0.149 0.851 40 H 0.117 0.883 41 H 0.111 0.889 42 H 0.136 0.864 43 H 0.104 0.896 44 H 0.135 0.865 45 H 0.123 0.877 46 H 0.115 0.885 47 H 0.123 0.877 48 H 0.069 0.931 49 H 0.107 0.893 50 H 0.100 0.900 51 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 13.018 -23.374 -11.786 29.235 hybrid contribution -1.342 1.343 -0.659 2.009 sum 11.676 -22.031 -12.445 27.867 Atomic orbital electron populations 1.70085 1.07689 1.27845 1.51768 1.25879 0.95704 1.03092 0.94817 0.85359 0.79000 0.78722 0.77683 1.18739 1.20313 1.20633 1.21464 0.93606 0.90952 1.50009 0.91859 1.19345 0.89924 0.88483 0.93785 1.62204 1.27629 1.03058 1.34357 1.21931 0.95321 0.97577 0.90487 1.22249 0.95435 0.85623 1.01598 1.58978 1.20925 1.00855 1.37188 1.22560 0.96382 0.97285 0.83891 1.74626 1.10881 1.09272 1.24389 1.73851 1.16494 1.14930 1.09319 1.24660 0.96859 0.94414 0.91597 1.18856 0.90311 0.97291 0.86678 1.86512 1.43311 1.76819 1.24661 1.23698 0.99720 0.95538 1.00592 1.23405 0.88574 1.00830 1.03588 1.46258 1.34190 1.25318 1.08577 1.21666 0.98911 1.01076 0.75979 1.22300 0.99101 1.05111 0.93494 1.23237 1.02844 0.93479 0.99549 1.23018 1.00819 1.00669 0.95786 1.21978 0.94915 0.98879 0.87887 1.22137 0.94913 0.88611 1.01172 0.92673 1.01501 0.97579 0.95060 0.90046 0.93990 0.88655 0.75845 0.88127 0.84864 0.85103 0.88288 0.88860 0.86386 0.89609 0.86505 0.87656 0.88452 0.87691 0.93138 0.89270 0.89960 0.94906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.68 13.29 21.45 0.28 -55.39 16 2 C 0.00 0.18 5.46 84.66 0.46 0.64 16 3 Si 0.97 43.88 29.54 68.60 2.03 45.91 16 4 H -0.26 -11.47 7.11 99.48 0.71 -10.77 16 5 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 6 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 7 C -0.52 -29.19 8.47 25.60 0.22 -28.97 16 8 H 0.06 3.47 7.13 -2.91 -0.02 3.45 16 9 C 0.21 11.12 4.72 85.56 0.40 11.52 16 10 N -0.55 -23.68 4.70 -900.27 -4.23 -27.91 16 11 C 0.08 2.84 5.43 86.31 0.47 3.31 16 12 C 0.08 2.44 5.55 86.31 0.48 2.92 16 13 N -0.45 -13.89 4.73 -705.54 -3.33 -17.22 16 14 C 0.36 10.68 6.87 260.10 1.79 12.47 16 15 N -0.35 -11.85 11.47 -58.00 -0.67 -12.51 16 16 N -0.31 -9.33 11.76 -49.54 -0.58 -9.92 16 17 C 0.19 4.58 7.52 137.64 1.03 5.62 16 18 C 0.11 1.78 3.11 -11.54 -0.04 1.74 16 19 O -0.51 -5.83 10.29 -148.98 -1.53 -7.36 16 20 C -0.16 -1.99 10.09 30.59 0.31 -1.69 16 21 C -0.13 -1.60 10.18 30.59 0.31 -1.29 16 22 N -0.45 -10.67 2.81 -514.86 -1.45 -12.12 16 23 C 0.15 2.53 5.72 86.38 0.49 3.02 16 24 C -0.18 -2.78 5.90 -10.80 -0.06 -2.85 16 25 C -0.15 -1.49 8.06 30.59 0.25 -1.24 16 26 C -0.17 -2.06 10.25 30.59 0.31 -1.74 16 27 C 0.09 2.95 5.15 86.31 0.44 3.39 16 28 C 0.06 2.21 5.61 86.31 0.48 2.69 16 29 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 30 H -0.03 -1.86 8.12 -2.39 -0.02 -1.88 16 31 H 0.01 0.35 8.03 -2.39 -0.02 0.33 16 32 H 0.03 1.18 8.14 -2.38 -0.02 1.16 16 33 H 0.08 3.27 6.79 -2.39 -0.02 3.25 16 34 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.10 2.48 7.23 -2.39 -0.02 2.46 16 36 H 0.39 3.12 7.72 -74.05 -0.57 2.55 16 37 H 0.10 1.62 7.89 -2.39 -0.02 1.60 16 38 H 0.13 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.13 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.09 1.73 7.24 -2.39 -0.02 1.71 16 42 H 0.12 1.69 6.89 -2.39 -0.02 1.67 16 43 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 44 H 0.12 0.95 7.01 -2.39 -0.02 0.94 16 45 H 0.11 0.82 8.14 -2.38 -0.02 0.80 16 46 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 47 H 0.10 1.17 8.14 -2.38 -0.02 1.15 16 48 H 0.05 1.80 8.00 -2.39 -0.02 1.78 16 49 H 0.09 2.68 8.13 -2.39 -0.02 2.66 16 50 H 0.08 2.96 8.07 -2.39 -0.02 2.94 16 51 H 0.03 1.20 8.14 -2.38 -0.02 1.18 16 Total: -1.00 -69.50 405.96 -1.76 -71.26 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: 0.36 Total: 15.72 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: 7.35 Total: 9.55 kcal Atomic # 7 Polarization: -125.10 SS G_CDS: -9.98 Total: -135.07 kcal Atomic # 8 Polarization: -5.83 SS G_CDS: -1.53 Total: -7.36 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -69.50 -1.76 -71.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646949482.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.250 kcal (2) G-P(sol) polarization free energy of solvation -69.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds