Wall clock time and date at job start Wed Apr 1 2020 05:28:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86801 * 120.00103 * 2 1 4 4 H 1.48495 * 109.46959 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47211 * 300.00197 * 3 2 1 6 6 H 1.48497 * 109.47167 * 60.00042 * 3 2 1 7 7 C 1.38813 * 119.99739 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99955 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00100 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00013 * 179.72656 * 9 7 2 11 11 C 1.53004 * 109.47080 * 185.38702 * 10 9 7 12 12 H 1.09004 * 109.58569 * 47.36773 * 11 10 9 13 13 C 1.53191 * 109.58707 * 167.79049 * 11 10 9 14 14 C 1.53033 * 109.31539 * 174.42261 * 13 11 10 15 15 C 1.53038 * 109.54164 * 298.63840 * 14 13 11 16 16 C 1.53194 * 109.31442 * 61.36142 * 15 14 13 17 17 N 1.46921 * 109.58681 * 287.08178 * 11 10 9 18 18 C 1.34775 * 120.63407 * 6.58426 * 17 11 10 19 19 O 1.21277 * 119.99785 * 4.22565 * 18 17 11 20 20 C 1.50703 * 120.00281 * 184.23273 * 18 17 11 21 21 H 1.09004 * 107.87895 * 307.69804 * 20 18 17 22 22 C 1.50956 * 108.02505 * 64.24701 * 20 18 17 23 23 C 1.53713 * 110.94149 * 194.32103 * 22 20 18 24 24 C 1.51885 * 106.86863 * 280.85977 * 23 22 20 25 25 N 1.29886 * 127.81010 * 245.31921 * 24 23 22 26 26 N 1.29033 * 109.22779 * 179.63551 * 25 24 23 27 27 C 1.30975 * 109.70417 * 0.05959 * 26 25 24 28 28 N 1.34602 * 124.57053 * 65.10662 * 24 23 22 29 29 C 1.47502 * 125.03271 * 0.51108 * 28 24 23 30 30 C 1.50859 * 108.02853 * 191.14467 * 20 18 17 31 31 H 0.97005 * 119.99719 * 359.97438 * 1 2 3 32 32 H 0.97001 * 120.00349 * 0.02562 * 9 7 2 33 33 H 1.08996 * 109.47171 * 305.38318 * 10 9 7 34 34 H 1.08994 * 109.47419 * 65.39051 * 10 9 7 35 35 H 1.09006 * 109.49794 * 294.38024 * 13 11 10 36 36 H 1.09004 * 109.49804 * 54.46950 * 13 11 10 37 37 H 1.08999 * 109.46763 * 178.61130 * 14 13 11 38 38 H 1.09004 * 109.44646 * 58.65026 * 14 13 11 39 39 H 1.09003 * 109.49612 * 301.41463 * 15 14 13 40 40 H 1.08998 * 109.50257 * 181.31716 * 15 14 13 41 41 H 1.08995 * 109.58934 * 185.58162 * 16 15 14 42 42 H 1.09003 * 109.58755 * 65.15192 * 16 15 14 43 43 H 1.09005 * 109.18282 * 314.66311 * 22 20 18 44 44 H 1.08993 * 109.18087 * 73.90756 * 22 20 18 45 45 H 1.09005 * 109.96625 * 161.52978 * 23 22 20 46 46 H 1.09000 * 110.06886 * 40.25086 * 23 22 20 47 47 H 1.08004 * 126.60962 * 180.09906 * 27 26 25 48 48 H 1.08995 * 109.93169 * 174.64746 * 29 28 24 49 49 H 1.08999 * 110.00142 * 53.46781 * 29 28 24 50 50 H 1.08998 * 109.14318 * 285.98377 * 30 20 18 51 51 H 1.08998 * 109.15163 * 45.13485 * 30 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0072 11 6 1.0686 -4.8162 -0.1411 12 1 0.3624 -4.6030 -0.9437 13 6 1.8304 -6.1080 -0.4532 14 6 0.8533 -7.2857 -0.4483 15 6 0.2212 -7.4208 0.9389 16 6 -0.5589 -6.1438 1.2667 17 7 0.3399 -4.9904 1.1227 18 6 0.4932 -4.1092 2.1309 19 8 1.1780 -3.1207 1.9734 20 6 -0.1861 -4.3523 3.4540 21 1 -1.2438 -4.5300 3.2595 22 6 0.3962 -5.6091 4.0541 23 6 -0.4748 -6.1190 5.2134 24 6 -0.1388 -5.2669 6.4250 25 7 0.4250 -5.6446 7.5325 26 7 0.5472 -4.6265 8.3158 27 6 0.0617 -3.5593 7.7320 28 7 -0.3848 -3.9471 6.5225 29 6 -1.0259 -3.1259 5.4783 30 6 -0.0677 -3.0940 4.2777 31 1 -0.4850 0.8401 0.0004 32 1 0.3555 -2.3881 -0.0005 33 1 2.7511 -3.6718 -0.8482 34 1 2.6144 -3.7600 0.9243 35 1 2.2976 -6.0269 -1.4347 36 1 2.5984 -6.2693 0.3035 37 1 1.3885 -8.2029 -0.6943 38 1 0.0717 -7.1119 -1.1880 39 1 1.0042 -7.5697 1.6825 40 1 -0.4570 -8.2740 0.9483 41 1 -0.9279 -6.1938 2.2911 42 1 -1.3980 -6.0413 0.5785 43 1 0.4547 -6.3794 3.2850 44 1 1.3990 -5.3976 4.4250 45 1 -0.2461 -7.1648 5.4189 46 1 -1.5303 -6.0113 4.9637 47 1 0.0267 -2.5606 8.1417 48 1 -1.1900 -2.1144 5.8496 49 1 -1.9758 -3.5722 5.1838 50 1 0.9560 -2.9987 4.6397 51 1 -0.3064 -2.2336 3.6526 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700124173.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:28:31 Heat of formation + Delta-G solvation = 96.454221 kcal Electronic energy + Delta-G solvation = -33057.767958 eV Core-core repulsion = 28995.396498 eV Total energy + Delta-G solvation = -4062.371460 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.34527 -40.59065 -37.77290 -36.65428 -34.85496 -34.06261 -32.60040 -32.21372 -31.70925 -29.98145 -29.75142 -27.26304 -25.96093 -24.47516 -24.40165 -22.83537 -22.48777 -22.16611 -20.81810 -20.49944 -20.28698 -18.53225 -17.75493 -17.15202 -16.49933 -16.03443 -15.78094 -15.30039 -15.05856 -14.99146 -14.59805 -14.45748 -14.23271 -14.03493 -13.87114 -13.56985 -13.36891 -13.02254 -12.84822 -12.55646 -12.45940 -12.27475 -12.14764 -11.94610 -11.79864 -11.66095 -11.41992 -11.09722 -11.07495 -10.91991 -10.88835 -10.75584 -10.74990 -10.60986 -10.39426 -10.32704 -10.18118 -9.87960 -9.54667 -9.25437 -8.72618 -8.41598 -8.09051 -6.54589 -5.59442 -2.78644 1.82059 2.43195 2.83618 3.20779 3.27890 3.50582 3.56335 3.57952 4.03175 4.36599 4.37349 4.41926 4.62957 4.69379 4.70188 4.76418 4.81098 4.85742 4.90967 4.96405 5.11422 5.13035 5.24819 5.27683 5.30544 5.35895 5.45784 5.56120 5.57204 5.66590 5.73546 5.75469 5.79353 5.82336 5.90229 5.94218 5.97417 6.01963 6.05853 6.11320 6.15406 6.26255 6.31528 6.50632 6.63108 6.78986 6.88295 7.21762 7.83973 7.88346 8.59073 8.68493 8.86512 9.71082 10.31725 10.66682 11.64737 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.008633 B = 0.004456 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3242.493414 B = 6281.674452 C = 8916.959064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.022 4.022 3 Si 0.899 3.101 4 H -0.283 1.283 5 H -0.296 1.296 6 H -0.296 1.296 7 C -0.204 4.204 8 H 0.064 0.936 9 N -0.695 5.695 10 C 0.163 3.837 11 C 0.142 3.858 12 H 0.068 0.932 13 C -0.127 4.127 14 C -0.117 4.117 15 C -0.136 4.136 16 C 0.103 3.897 17 N -0.614 5.614 18 C 0.474 3.526 19 O -0.438 6.438 20 C -0.104 4.104 21 H 0.084 0.916 22 C -0.119 4.119 23 C -0.029 4.029 24 C 0.177 3.823 25 N -0.299 5.299 26 N -0.308 5.308 27 C 0.149 3.851 28 N -0.466 5.466 29 C 0.105 3.895 30 C -0.118 4.118 31 H 0.248 0.752 32 H 0.379 0.621 33 H 0.015 0.985 34 H 0.034 0.966 35 H 0.072 0.928 36 H 0.065 0.935 37 H 0.061 0.939 38 H 0.063 0.937 39 H 0.066 0.934 40 H 0.070 0.930 41 H 0.085 0.915 42 H 0.063 0.937 43 H 0.092 0.908 44 H 0.072 0.928 45 H 0.104 0.896 46 H 0.088 0.912 47 H 0.217 0.783 48 H 0.106 0.894 49 H 0.096 0.904 50 H 0.078 0.922 51 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.075 -16.141 6.394 18.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.216 4.216 3 Si 0.731 3.269 4 H -0.209 1.209 5 H -0.223 1.223 6 H -0.223 1.223 7 C -0.336 4.336 8 H 0.082 0.918 9 N -0.338 5.338 10 C 0.035 3.965 11 C 0.039 3.961 12 H 0.086 0.914 13 C -0.166 4.166 14 C -0.155 4.155 15 C -0.174 4.174 16 C -0.020 4.020 17 N -0.352 5.352 18 C 0.258 3.742 19 O -0.305 6.305 20 C -0.126 4.126 21 H 0.102 0.898 22 C -0.157 4.157 23 C -0.069 4.069 24 C -0.092 4.092 25 N -0.140 5.140 26 N -0.148 5.148 27 C -0.139 4.139 28 N -0.156 5.156 29 C -0.017 4.017 30 C -0.156 4.156 31 H 0.058 0.942 32 H 0.213 0.787 33 H 0.032 0.968 34 H 0.052 0.948 35 H 0.091 0.909 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.089 0.911 41 H 0.103 0.897 42 H 0.081 0.919 43 H 0.110 0.890 44 H 0.091 0.909 45 H 0.122 0.878 46 H 0.106 0.894 47 H 0.233 0.767 48 H 0.125 0.875 49 H 0.115 0.885 50 H 0.096 0.904 51 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -4.869 -16.273 7.370 18.516 hybrid contribution -0.586 1.931 -0.876 2.200 sum -5.456 -14.342 6.493 16.662 Atomic orbital electron populations 1.69666 1.04905 1.24639 1.59926 1.24556 0.95392 0.97031 1.04624 0.86204 0.78784 0.84940 0.76923 1.20895 1.22334 1.22349 1.19200 0.90702 0.84369 1.39296 0.91839 1.42174 1.05229 0.99445 1.86926 1.20822 0.92855 0.85108 0.97704 1.21468 0.94133 0.95251 0.85239 0.91397 1.21910 0.98172 0.94366 1.02175 1.21486 0.98919 0.98266 0.96819 1.21954 1.00127 0.97349 0.97996 1.21775 0.92594 0.85569 1.02107 1.47893 1.46048 1.26240 1.14998 1.20455 0.85082 0.83609 0.85049 1.91247 1.35412 1.24608 1.79239 1.20624 1.01295 0.95747 0.94945 0.89797 1.21537 0.99993 0.96722 0.97446 1.20558 1.00459 0.98195 0.87698 1.24801 1.01994 0.83510 0.98877 1.74190 1.17520 1.21966 1.00293 1.74501 1.19704 0.95691 1.24862 1.26328 1.01049 1.02180 0.84323 1.46391 1.44549 1.09454 1.15181 1.22586 0.96659 0.95829 0.86596 1.21491 1.00172 0.98753 0.95169 0.94220 0.78690 0.96752 0.94838 0.90937 0.91656 0.92025 0.91869 0.91516 0.91116 0.89653 0.91898 0.88962 0.90890 0.87777 0.89371 0.76656 0.87523 0.88547 0.90354 0.87324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.66 13.06 55.49 0.72 -27.94 16 2 C -0.02 -0.64 5.50 -17.43 -0.10 -0.74 16 3 Si 0.90 23.17 29.55 -169.99 -5.02 18.15 16 4 H -0.28 -7.16 7.11 56.52 0.40 -6.75 16 5 H -0.30 -7.64 7.11 56.52 0.40 -7.24 16 6 H -0.30 -7.68 7.11 56.52 0.40 -7.28 16 7 C -0.20 -5.85 9.74 -15.06 -0.15 -6.00 16 8 H 0.06 1.83 7.83 -52.49 -0.41 1.41 16 9 N -0.69 -17.73 3.19 -59.91 -0.19 -17.92 16 10 C 0.16 3.35 4.89 -4.04 -0.02 3.33 16 11 C 0.14 2.21 2.91 -67.60 -0.20 2.01 16 12 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 13 C -0.13 -1.51 5.34 -26.62 -0.14 -1.66 16 14 C -0.12 -1.07 5.88 -26.69 -0.16 -1.22 16 15 C -0.14 -1.08 5.85 -26.61 -0.16 -1.24 16 16 C 0.10 0.96 5.33 -3.70 -0.02 0.94 16 17 N -0.61 -8.42 2.94 -165.21 -0.49 -8.90 16 18 C 0.47 7.54 6.45 -10.98 -0.07 7.47 16 19 O -0.44 -9.42 9.45 5.56 0.05 -9.37 16 20 C -0.10 -1.19 1.28 -93.87 -0.12 -1.31 16 21 H 0.08 0.79 6.81 -51.93 -0.35 0.43 16 22 C -0.12 -1.15 4.22 -27.39 -0.12 -1.26 16 23 C -0.03 -0.25 6.02 -26.93 -0.16 -0.41 16 24 C 0.18 2.13 7.02 -155.75 -1.09 1.03 16 25 N -0.30 -4.57 12.23 32.84 0.40 -4.17 16 26 N -0.31 -4.67 12.25 29.60 0.36 -4.31 16 27 C 0.15 1.73 12.83 -90.35 -1.16 0.57 16 28 N -0.47 -5.08 2.72 -114.24 -0.31 -5.39 16 29 C 0.11 0.93 6.53 -3.16 -0.02 0.91 16 30 C -0.12 -1.46 4.39 -27.48 -0.12 -1.58 16 31 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 32 H 0.38 10.28 7.23 -40.82 -0.29 9.99 16 33 H 0.01 0.31 8.09 -51.93 -0.42 -0.11 16 34 H 0.03 0.76 6.35 -51.93 -0.33 0.43 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.07 0.55 7.30 -51.93 -0.38 0.17 16 40 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.09 0.63 4.47 -51.93 -0.23 0.40 16 42 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.09 0.78 4.39 -51.93 -0.23 0.55 16 44 H 0.07 0.90 7.91 -51.93 -0.41 0.49 16 45 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.09 0.55 7.89 -51.93 -0.41 0.14 16 47 H 0.22 1.62 8.06 -52.48 -0.42 1.19 16 48 H 0.11 0.76 8.13 -51.93 -0.42 0.34 16 49 H 0.10 0.67 7.87 -51.93 -0.41 0.26 16 50 H 0.08 1.15 8.08 -51.93 -0.42 0.73 16 51 H 0.11 1.67 7.62 -51.93 -0.40 1.28 16 LS Contribution 382.36 15.07 5.76 5.76 Total: -1.00 -36.98 382.36 -10.56 -47.54 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -8.06 Total: 5.69 kcal Atomic # 6 Polarization: 4.65 SS G_CDS: -3.80 Total: 0.85 kcal Atomic # 7 Polarization: -69.13 SS G_CDS: 0.50 Total: -68.63 kcal Atomic # 8 Polarization: -9.42 SS G_CDS: 0.05 Total: -9.37 kcal Atomic # 14 Polarization: 23.17 SS G_CDS: -5.02 Total: 18.15 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -36.98 -10.56 -47.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700124173.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.996 kcal (2) G-P(sol) polarization free energy of solvation -36.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.542 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds