Wall clock time and date at job start Wed Apr 1 2020 05:28:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86801 * 120.00103 * 2 1 4 4 H 1.48495 * 109.46959 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47211 * 300.00197 * 3 2 1 6 6 H 1.48497 * 109.47167 * 60.00042 * 3 2 1 7 7 C 1.38813 * 119.99739 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99955 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00100 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00013 * 179.72656 * 9 7 2 11 11 C 1.53004 * 109.47080 * 185.38702 * 10 9 7 12 12 H 1.09004 * 109.58569 * 47.36773 * 11 10 9 13 13 C 1.53191 * 109.58707 * 167.79049 * 11 10 9 14 14 C 1.53033 * 109.31539 * 174.42261 * 13 11 10 15 15 C 1.53038 * 109.54164 * 298.63840 * 14 13 11 16 16 C 1.53194 * 109.31442 * 61.36142 * 15 14 13 17 17 N 1.46921 * 109.58681 * 287.08178 * 11 10 9 18 18 C 1.34775 * 120.63407 * 6.58426 * 17 11 10 19 19 O 1.21277 * 119.99785 * 4.22565 * 18 17 11 20 20 C 1.50703 * 120.00281 * 184.23273 * 18 17 11 21 21 H 1.09004 * 107.87895 * 307.69804 * 20 18 17 22 22 C 1.50956 * 108.02505 * 64.24701 * 20 18 17 23 23 C 1.53713 * 110.94149 * 194.32103 * 22 20 18 24 24 C 1.51885 * 106.86863 * 280.85977 * 23 22 20 25 25 N 1.29886 * 127.81010 * 245.31921 * 24 23 22 26 26 N 1.29033 * 109.22779 * 179.63551 * 25 24 23 27 27 C 1.30975 * 109.70417 * 0.05959 * 26 25 24 28 28 N 1.34602 * 124.57053 * 65.10662 * 24 23 22 29 29 C 1.47502 * 125.03271 * 0.51108 * 28 24 23 30 30 C 1.50859 * 108.02853 * 191.14467 * 20 18 17 31 31 H 0.97005 * 119.99719 * 359.97438 * 1 2 3 32 32 H 0.97001 * 120.00349 * 0.02562 * 9 7 2 33 33 H 1.08996 * 109.47171 * 305.38318 * 10 9 7 34 34 H 1.08994 * 109.47419 * 65.39051 * 10 9 7 35 35 H 1.09006 * 109.49794 * 294.38024 * 13 11 10 36 36 H 1.09004 * 109.49804 * 54.46950 * 13 11 10 37 37 H 1.08999 * 109.46763 * 178.61130 * 14 13 11 38 38 H 1.09004 * 109.44646 * 58.65026 * 14 13 11 39 39 H 1.09003 * 109.49612 * 301.41463 * 15 14 13 40 40 H 1.08998 * 109.50257 * 181.31716 * 15 14 13 41 41 H 1.08995 * 109.58934 * 185.58162 * 16 15 14 42 42 H 1.09003 * 109.58755 * 65.15192 * 16 15 14 43 43 H 1.09005 * 109.18282 * 314.66311 * 22 20 18 44 44 H 1.08993 * 109.18087 * 73.90756 * 22 20 18 45 45 H 1.09005 * 109.96625 * 161.52978 * 23 22 20 46 46 H 1.09000 * 110.06886 * 40.25086 * 23 22 20 47 47 H 1.08004 * 126.60962 * 180.09906 * 27 26 25 48 48 H 1.08995 * 109.93169 * 174.64746 * 29 28 24 49 49 H 1.08999 * 110.00142 * 53.46781 * 29 28 24 50 50 H 1.08998 * 109.14318 * 285.98377 * 30 20 18 51 51 H 1.08998 * 109.15163 * 45.13485 * 30 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0072 11 6 1.0686 -4.8162 -0.1411 12 1 0.3624 -4.6030 -0.9437 13 6 1.8304 -6.1080 -0.4532 14 6 0.8533 -7.2857 -0.4483 15 6 0.2212 -7.4208 0.9389 16 6 -0.5589 -6.1438 1.2667 17 7 0.3399 -4.9904 1.1227 18 6 0.4932 -4.1092 2.1309 19 8 1.1780 -3.1207 1.9734 20 6 -0.1861 -4.3523 3.4540 21 1 -1.2438 -4.5300 3.2595 22 6 0.3962 -5.6091 4.0541 23 6 -0.4748 -6.1190 5.2134 24 6 -0.1388 -5.2669 6.4250 25 7 0.4250 -5.6446 7.5325 26 7 0.5472 -4.6265 8.3158 27 6 0.0617 -3.5593 7.7320 28 7 -0.3848 -3.9471 6.5225 29 6 -1.0259 -3.1259 5.4783 30 6 -0.0677 -3.0940 4.2777 31 1 -0.4850 0.8401 0.0004 32 1 0.3555 -2.3881 -0.0005 33 1 2.7511 -3.6718 -0.8482 34 1 2.6144 -3.7600 0.9243 35 1 2.2976 -6.0269 -1.4347 36 1 2.5984 -6.2693 0.3035 37 1 1.3885 -8.2029 -0.6943 38 1 0.0717 -7.1119 -1.1880 39 1 1.0042 -7.5697 1.6825 40 1 -0.4570 -8.2740 0.9483 41 1 -0.9279 -6.1938 2.2911 42 1 -1.3980 -6.0413 0.5785 43 1 0.4547 -6.3794 3.2850 44 1 1.3990 -5.3976 4.4250 45 1 -0.2461 -7.1648 5.4189 46 1 -1.5303 -6.0113 4.9637 47 1 0.0267 -2.5606 8.1417 48 1 -1.1900 -2.1144 5.8496 49 1 -1.9758 -3.5722 5.1838 50 1 0.9560 -2.9987 4.6397 51 1 -0.3064 -2.2336 3.6526 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700124173.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:28:30 Heat of formation + Delta-G solvation = 73.423991 kcal Electronic energy + Delta-G solvation = -33058.766623 eV Core-core repulsion = 28995.396498 eV Total energy + Delta-G solvation = -4063.370126 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -44.25583 -41.74565 -38.77229 -37.78857 -36.31878 -35.28802 -33.70851 -33.56567 -32.82695 -31.52013 -30.77279 -28.25753 -27.35914 -25.71953 -25.35422 -24.30861 -23.42670 -23.37496 -22.01205 -21.39857 -21.15977 -19.72239 -19.09745 -18.50378 -17.73940 -17.03216 -16.82297 -16.69471 -16.22624 -15.97459 -15.85009 -15.53496 -15.30903 -15.17831 -15.03424 -14.79099 -14.69492 -14.25543 -13.90483 -13.73486 -13.54210 -13.39576 -13.28299 -13.10893 -12.93784 -12.82622 -12.72760 -12.55219 -12.40008 -12.11138 -12.02277 -11.94655 -11.86942 -11.81786 -11.64004 -11.41785 -11.33814 -11.26373 -11.09335 -10.85379 -10.22170 -9.75867 -9.33582 -8.61352 -7.84059 -5.01220 0.95394 1.42655 1.43093 1.52625 1.62102 1.87317 2.02942 2.18323 2.60520 3.24030 3.42839 3.48858 3.55796 3.62486 3.81960 3.85112 3.91052 3.92250 4.02524 4.08391 4.18928 4.21736 4.29514 4.38575 4.41463 4.44171 4.47745 4.49840 4.58980 4.69068 4.74443 4.80493 4.87532 4.89256 4.93936 5.03254 5.08253 5.10897 5.13618 5.16617 5.21673 5.23257 5.28459 5.30941 5.37043 5.51492 5.57693 5.89987 5.97472 6.37719 6.75066 7.44588 7.66249 7.74175 8.25273 8.49520 9.40636 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.008633 B = 0.004456 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3242.493414 B = 6281.674452 C = 8916.959064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.078 4.078 3 Si 0.959 3.041 4 H -0.277 1.277 5 H -0.293 1.293 6 H -0.297 1.297 7 C -0.208 4.208 8 H 0.055 0.945 9 N -0.698 5.698 10 C 0.167 3.833 11 C 0.148 3.852 12 H 0.057 0.943 13 C -0.120 4.120 14 C -0.114 4.114 15 C -0.131 4.131 16 C 0.094 3.906 17 N -0.611 5.611 18 C 0.468 3.532 19 O -0.509 6.509 20 C -0.094 4.094 21 H 0.120 0.880 22 C -0.105 4.105 23 C -0.022 4.022 24 C 0.177 3.823 25 N -0.343 5.343 26 N -0.354 5.354 27 C 0.155 3.845 28 N -0.466 5.466 29 C 0.114 3.886 30 C -0.109 4.109 31 H 0.244 0.756 32 H 0.369 0.631 33 H 0.007 0.993 34 H 0.013 0.987 35 H 0.073 0.927 36 H 0.058 0.942 37 H 0.080 0.920 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.105 0.895 41 H 0.112 0.888 42 H 0.072 0.928 43 H 0.112 0.888 44 H 0.039 0.961 45 H 0.120 0.880 46 H 0.125 0.875 47 H 0.250 0.750 48 H 0.125 0.875 49 H 0.130 0.870 50 H 0.042 0.958 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.149 -18.571 6.504 21.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.269 4.269 3 Si 0.790 3.210 4 H -0.202 1.202 5 H -0.220 1.220 6 H -0.225 1.225 7 C -0.341 4.341 8 H 0.073 0.927 9 N -0.338 5.338 10 C 0.040 3.960 11 C 0.044 3.956 12 H 0.075 0.925 13 C -0.159 4.159 14 C -0.151 4.151 15 C -0.169 4.169 16 C -0.027 4.027 17 N -0.347 5.347 18 C 0.254 3.746 19 O -0.382 6.382 20 C -0.115 4.115 21 H 0.138 0.862 22 C -0.143 4.143 23 C -0.061 4.061 24 C -0.093 4.093 25 N -0.182 5.182 26 N -0.193 5.193 27 C -0.134 4.134 28 N -0.156 5.156 29 C -0.007 4.007 30 C -0.148 4.148 31 H 0.053 0.947 32 H 0.201 0.799 33 H 0.024 0.976 34 H 0.031 0.969 35 H 0.092 0.908 36 H 0.077 0.923 37 H 0.099 0.901 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.123 0.877 41 H 0.130 0.870 42 H 0.090 0.910 43 H 0.130 0.870 44 H 0.058 0.942 45 H 0.139 0.861 46 H 0.143 0.857 47 H 0.266 0.734 48 H 0.144 0.856 49 H 0.148 0.852 50 H 0.061 0.939 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -6.936 -18.787 7.475 21.376 hybrid contribution 0.118 2.643 -0.930 2.805 sum -6.818 -16.144 6.545 18.707 Atomic orbital electron populations 1.69800 1.06021 1.24917 1.61496 1.25214 0.96285 0.99853 1.05560 0.85252 0.77919 0.81190 0.76603 1.20228 1.22005 1.22490 1.19455 0.90535 0.86043 1.38069 0.92736 1.42197 1.04663 1.00205 1.86785 1.20828 0.93800 0.85421 0.95971 1.21254 0.93250 0.95005 0.86045 0.92463 1.21853 0.98429 0.93649 1.01950 1.21490 0.98382 0.97258 0.97981 1.21963 1.00525 0.97442 0.96962 1.22178 0.92139 0.84290 1.04134 1.48048 1.45972 1.27111 1.13618 1.21337 0.83813 0.82784 0.86637 1.91214 1.38636 1.27500 1.80822 1.20639 1.02749 0.96064 0.92091 0.86223 1.21426 0.98460 0.96090 0.98373 1.20771 1.02064 0.98242 0.85042 1.25463 1.00563 0.84248 0.98988 1.74086 1.19388 1.22918 1.01836 1.74401 1.21703 0.96831 1.26387 1.26994 0.99309 1.02765 0.84337 1.46511 1.44482 1.09371 1.15242 1.22688 0.96342 0.97203 0.84437 1.21299 0.99206 0.98068 0.96188 0.94660 0.79896 0.97562 0.96915 0.90814 0.92275 0.90092 0.91487 0.91503 0.87704 0.86979 0.90990 0.86984 0.94191 0.86137 0.85666 0.73400 0.85638 0.85188 0.93868 0.90891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.83 13.06 21.65 0.28 -60.55 16 2 C -0.08 -4.71 5.50 84.86 0.47 -4.24 16 3 Si 0.96 49.02 29.55 68.60 2.03 51.05 16 4 H -0.28 -13.69 7.11 99.48 0.71 -12.99 16 5 H -0.29 -14.71 7.11 99.48 0.71 -14.00 16 6 H -0.30 -15.14 7.11 99.48 0.71 -14.44 16 7 C -0.21 -12.47 9.74 84.03 0.82 -11.65 16 8 H 0.05 3.28 7.83 -2.91 -0.02 3.26 16 9 N -0.70 -37.36 3.19 -343.46 -1.10 -38.46 16 10 C 0.17 7.21 4.89 86.38 0.42 7.63 16 11 C 0.15 4.62 2.91 44.98 0.13 4.75 16 12 H 0.06 1.91 8.14 -2.38 -0.02 1.90 16 13 C -0.12 -2.71 5.34 30.67 0.16 -2.54 16 14 C -0.11 -1.67 5.88 30.62 0.18 -1.49 16 15 C -0.13 -1.48 5.85 30.67 0.18 -1.30 16 16 C 0.09 1.39 5.33 86.36 0.46 1.85 16 17 N -0.61 -16.10 2.94 -795.00 -2.33 -18.44 16 18 C 0.47 15.00 6.45 87.66 0.57 15.57 16 19 O -0.51 -23.23 9.45 -3.02 -0.03 -23.26 16 20 C -0.09 -2.00 1.28 -12.90 -0.02 -2.02 16 21 H 0.12 1.73 6.81 -2.39 -0.02 1.72 16 22 C -0.11 -1.78 4.22 30.17 0.13 -1.66 16 23 C -0.02 -0.28 6.02 30.47 0.18 -0.10 16 24 C 0.18 3.93 7.02 138.83 0.98 4.91 16 25 N -0.34 -10.28 12.23 -50.00 -0.61 -10.89 16 26 N -0.35 -10.71 12.25 -60.27 -0.74 -11.45 16 27 C 0.15 3.42 12.83 180.25 2.31 5.73 16 28 N -0.47 -9.34 2.72 -515.34 -1.40 -10.74 16 29 C 0.11 1.75 6.53 86.40 0.56 2.32 16 30 C -0.11 -2.71 4.39 30.11 0.13 -2.58 16 31 H 0.24 14.87 8.31 -92.70 -0.77 14.10 16 32 H 0.37 20.92 7.23 -92.71 -0.67 20.25 16 33 H 0.01 0.29 8.09 -2.39 -0.02 0.27 16 34 H 0.01 0.63 6.35 -2.39 -0.02 0.61 16 35 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 36 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 39 H 0.07 0.80 7.30 -2.39 -0.02 0.79 16 40 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 41 H 0.11 1.06 4.47 -2.39 -0.01 1.05 16 42 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.11 1.48 4.39 -2.38 -0.01 1.47 16 44 H 0.04 0.97 7.91 -2.39 -0.02 0.95 16 45 H 0.12 1.26 8.14 -2.38 -0.02 1.25 16 46 H 0.13 0.78 7.89 -2.39 -0.02 0.76 16 47 H 0.25 3.29 8.06 -2.91 -0.02 3.27 16 48 H 0.13 1.50 8.13 -2.39 -0.02 1.48 16 49 H 0.13 1.20 7.87 -2.39 -0.02 1.18 16 50 H 0.04 1.35 8.08 -2.39 -0.02 1.33 16 51 H 0.07 2.37 7.62 -2.39 -0.02 2.36 16 Total: -1.00 -88.54 382.36 4.04 -84.50 By element: Atomic # 1 Polarization: 22.75 SS G_CDS: 0.28 Total: 23.03 kcal Atomic # 6 Polarization: 7.52 SS G_CDS: 7.66 Total: 15.19 kcal Atomic # 7 Polarization: -144.61 SS G_CDS: -5.90 Total: -150.51 kcal Atomic # 8 Polarization: -23.23 SS G_CDS: -0.03 Total: -23.26 kcal Atomic # 14 Polarization: 49.02 SS G_CDS: 2.03 Total: 51.05 kcal Total: -88.54 4.04 -84.50 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700124173.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.923 kcal (2) G-P(sol) polarization free energy of solvation -88.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.499 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds