Wall clock time and date at job start Wed Apr 1 2020 05:22:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99943 * 2 1 4 4 H 1.48494 * 109.47325 * 240.00214 * 3 2 1 5 5 H 1.48501 * 109.47226 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47020 * 120.00025 * 3 2 1 7 7 C 1.38810 * 119.99962 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99762 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99995 * 359.97438 * 7 2 1 10 10 C 1.47620 * 125.72609 * 0.02562 * 9 7 2 11 11 C 1.55842 * 104.46929 * 204.86610 * 10 9 7 12 12 H 1.09004 * 113.42984 * 201.16172 * 11 10 9 13 13 C 1.52983 * 106.36780 * 77.06102 * 11 10 9 14 14 C 1.52625 * 110.93084 * 198.11069 * 13 11 10 15 15 C 1.53296 * 108.50617 * 62.20504 * 14 13 11 16 16 H 1.08997 * 109.71468 * 55.92891 * 15 14 13 17 17 N 1.46496 * 109.71273 * 176.52658 * 15 14 13 18 18 C 1.34777 * 120.00271 * 274.39767 * 17 15 14 19 19 O 1.21278 * 119.99854 * 0.02562 * 18 17 15 20 20 C 1.50703 * 120.00161 * 180.02562 * 18 17 15 21 21 C 1.53000 * 109.46912 * 180.02562 * 20 18 17 22 22 C 1.53001 * 109.46886 * 180.02562 * 21 20 18 23 23 N 1.46500 * 109.47299 * 179.97438 * 22 21 20 24 24 C 1.34430 * 126.82414 * 124.99303 * 23 22 21 25 25 N 1.30833 * 108.07734 * 179.97438 * 24 23 22 26 26 C 1.33247 * 109.82759 * 0.02562 * 25 24 23 27 27 N 1.30710 * 108.94746 * 359.74681 * 26 25 24 28 28 C 1.52838 * 108.25290 * 296.22863 * 15 14 13 29 29 C 1.50897 * 111.56344 * 58.98419 * 28 15 14 30 30 H 1.09003 * 108.32322 * 186.73762 * 29 28 15 31 31 C 1.47424 * 125.72721 * 180.02562 * 9 7 2 32 32 H 0.96999 * 120.00386 * 359.97438 * 1 2 3 33 33 H 1.09002 * 110.43441 * 86.12156 * 10 9 7 34 34 H 1.09001 * 110.43590 * 323.61516 * 10 9 7 35 35 H 1.09002 * 109.19196 * 77.73631 * 13 11 10 36 36 H 1.09001 * 109.18557 * 318.48141 * 13 11 10 37 37 H 1.08997 * 109.62910 * 302.49524 * 14 13 11 38 38 H 1.09004 * 109.79252 * 182.00630 * 14 13 11 39 39 H 0.97005 * 120.00266 * 94.40350 * 17 15 14 40 40 H 1.09002 * 109.47152 * 60.00245 * 20 18 17 41 41 H 1.09001 * 109.46980 * 300.00345 * 20 18 17 42 42 H 1.09001 * 109.47194 * 299.99742 * 21 20 18 43 43 H 1.08992 * 109.47399 * 59.99914 * 21 20 18 44 44 H 1.09001 * 109.47109 * 299.99380 * 22 21 20 45 45 H 1.09002 * 109.47508 * 59.99571 * 22 21 20 46 46 H 1.08001 * 125.96153 * 0.02562 * 24 23 22 47 47 H 1.08001 * 125.52747 * 180.02562 * 26 25 24 48 48 H 1.08998 * 109.06170 * 179.57151 * 28 15 14 49 49 H 1.09001 * 109.06002 * 298.49853 * 28 15 14 50 50 H 1.09007 * 110.04571 * 60.06642 * 31 9 7 51 51 H 1.08997 * 110.04655 * 298.59780 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1433 -2.5353 -0.0005 11 6 -0.3942 -3.9364 0.6340 12 1 -1.3685 -4.3569 0.3849 13 6 -0.1995 -3.7679 2.1420 14 6 0.0220 -5.1185 2.8175 15 6 1.3059 -5.7391 2.2552 16 1 2.1386 -5.0494 2.3931 17 7 1.5889 -6.9998 2.9455 18 6 2.2717 -6.9933 4.1075 19 8 2.6515 -5.9437 4.5818 20 6 2.5633 -8.2903 4.8174 21 6 3.3442 -8.0043 6.1017 22 6 3.6408 -9.3212 6.8220 23 7 4.3891 -9.0475 8.0515 24 6 4.0584 -9.4284 9.2976 25 7 4.9815 -8.9898 10.1145 26 6 5.9130 -8.3271 9.4300 27 7 5.5970 -8.3395 8.1617 28 6 1.0968 -6.0032 0.7644 29 6 0.7704 -4.7339 0.0166 30 1 0.5146 -4.9969 -1.0098 31 6 1.9315 -3.7320 -0.0005 32 1 -0.4851 0.8400 0.0004 33 1 -0.5289 -2.5046 -1.0196 34 1 -0.6041 -1.7551 0.6054 35 1 -1.0853 -3.2957 2.5671 36 1 0.6664 -3.1309 2.3224 37 1 -0.8233 -5.7746 2.6101 38 1 0.1229 -4.9806 3.8941 39 1 1.2849 -7.8393 2.5663 40 1 3.1553 -8.9350 4.1677 41 1 1.6256 -8.7873 5.0657 42 1 4.2820 -7.5071 5.8536 43 1 2.7520 -7.3599 6.7511 44 1 2.7033 -9.8188 7.0701 45 1 4.2333 -9.9654 6.1723 46 1 3.1839 -9.9978 9.5757 47 1 6.7896 -7.8597 9.8537 48 1 2.0059 -6.4382 0.3490 49 1 0.2764 -6.7100 0.6398 50 1 2.5509 -3.8625 0.8869 51 1 2.5319 -3.8711 -0.8996 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700617841.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:22:44 Heat of formation + Delta-G solvation = 67.189025 kcal Electronic energy + Delta-G solvation = -30309.066322 eV Core-core repulsion = 26245.425827 eV Total energy + Delta-G solvation = -4063.640494 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.35864 -40.23668 -38.94736 -36.09757 -35.40735 -33.39299 -32.53751 -31.61262 -31.51388 -30.75051 -29.04613 -27.62220 -25.92735 -24.86116 -23.46975 -22.33507 -22.20036 -21.70810 -21.21252 -20.42212 -19.87217 -18.38636 -17.76787 -17.02904 -16.62082 -16.51388 -16.32176 -15.74836 -15.27483 -14.75710 -14.73856 -14.39728 -14.31993 -13.95376 -13.75588 -13.69004 -13.51130 -13.16910 -12.83895 -12.44388 -12.23766 -12.19070 -12.05782 -11.96771 -11.71846 -11.50570 -11.28254 -11.08806 -11.01704 -10.86811 -10.59831 -10.49826 -10.34820 -10.13428 -10.06446 -10.02363 -9.95231 -9.80078 -9.66279 -9.41675 -9.36411 -8.91032 -8.59845 -6.77291 -5.60580 -3.01674 1.29954 1.92971 2.57844 2.65554 3.08052 3.44216 3.48291 3.49481 3.96462 3.98288 4.30418 4.39246 4.53366 4.59135 4.67931 4.76030 4.85021 4.92796 4.98307 5.01636 5.12614 5.32353 5.48468 5.49760 5.57358 5.58853 5.63026 5.70973 5.84925 5.87249 5.88079 5.90028 6.01244 6.10174 6.10733 6.20189 6.30938 6.42812 6.43570 6.46736 6.56291 6.66160 6.73012 6.87918 7.00317 7.16426 7.46158 7.52450 7.66855 7.74546 7.90771 8.19705 8.41177 9.26901 9.87625 10.53298 11.43004 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.014340 B = 0.001967 C = 0.001805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1952.114694 B =14232.707952 C =15511.974902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.012 4.012 3 Si 0.913 3.087 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.219 4.219 8 H 0.076 0.924 9 N -0.601 5.601 10 C 0.156 3.844 11 C -0.114 4.114 12 H 0.071 0.929 13 C -0.102 4.102 14 C -0.122 4.122 15 C 0.143 3.857 16 H 0.095 0.905 17 N -0.726 5.726 18 C 0.509 3.491 19 O -0.532 6.532 20 C -0.138 4.138 21 C -0.117 4.117 22 C 0.129 3.871 23 N -0.378 5.378 24 C 0.251 3.749 25 N -0.549 5.549 26 C 0.196 3.804 27 N -0.313 5.313 28 C -0.106 4.106 29 C -0.091 4.091 30 H 0.065 0.935 31 C 0.139 3.861 32 H 0.252 0.748 33 H 0.007 0.993 34 H 0.110 0.890 35 H 0.056 0.944 36 H 0.078 0.922 37 H 0.055 0.945 38 H 0.058 0.942 39 H 0.396 0.604 40 H 0.096 0.904 41 H 0.095 0.905 42 H 0.088 0.912 43 H 0.078 0.922 44 H 0.103 0.897 45 H 0.091 0.909 46 H 0.218 0.782 47 H 0.217 0.783 48 H 0.062 0.938 49 H 0.061 0.939 50 H 0.024 0.976 51 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.237 -25.375 11.534 27.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.207 4.207 3 Si 0.744 3.256 4 H -0.213 1.213 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.348 4.348 8 H 0.093 0.907 9 N -0.327 5.327 10 C 0.031 3.969 11 C -0.133 4.133 12 H 0.089 0.911 13 C -0.140 4.140 14 C -0.160 4.160 15 C 0.040 3.960 16 H 0.113 0.887 17 N -0.377 5.377 18 C 0.294 3.706 19 O -0.408 6.408 20 C -0.179 4.179 21 C -0.156 4.156 22 C 0.007 3.993 23 N -0.169 5.169 24 C -0.046 4.046 25 N -0.277 5.277 26 C -0.107 4.107 27 N -0.140 5.140 28 C -0.145 4.145 29 C -0.110 4.110 30 H 0.084 0.916 31 C 0.014 3.986 32 H 0.062 0.938 33 H 0.025 0.975 34 H 0.127 0.873 35 H 0.075 0.925 36 H 0.096 0.904 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.229 0.771 40 H 0.115 0.885 41 H 0.113 0.887 42 H 0.106 0.894 43 H 0.096 0.904 44 H 0.121 0.879 45 H 0.109 0.891 46 H 0.234 0.766 47 H 0.233 0.767 48 H 0.080 0.920 49 H 0.080 0.920 50 H 0.042 0.958 51 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 1.886 -24.089 11.582 26.795 hybrid contribution 0.050 0.239 -0.424 0.489 sum 1.936 -23.850 11.158 26.402 Atomic orbital electron populations 1.69766 1.04824 1.24758 1.57845 1.24759 0.95717 0.97623 1.02637 0.86169 0.78416 0.83162 0.77880 1.21308 1.21619 1.21179 1.19033 0.90450 0.82525 1.42770 0.90655 1.44574 1.01840 0.99613 1.86699 1.22243 0.84726 0.92294 0.97626 1.22588 0.96066 0.99326 0.95346 0.91058 1.21362 1.02785 0.95409 0.94443 1.21878 0.96354 0.97971 0.99831 1.21113 0.98900 0.84826 0.91209 0.88742 1.46153 1.57380 1.10315 1.23829 1.20494 0.77827 0.91099 0.81173 1.90778 1.51366 1.33292 1.65354 1.21574 1.02297 0.96628 0.97366 1.21585 1.02644 0.95848 0.95485 1.21898 0.95404 0.98811 0.83186 1.50575 1.17690 1.40334 1.08286 1.26085 0.99655 0.97852 0.80977 1.70541 1.04729 1.18117 1.34279 1.26049 0.99460 0.97739 0.87460 1.78105 0.98267 1.17061 1.20577 1.21191 1.01265 0.98361 0.93644 1.21243 0.97453 0.93568 0.98750 0.91607 1.21225 0.93731 0.86062 0.97624 0.93770 0.97456 0.87269 0.92530 0.90356 0.92617 0.92355 0.77090 0.88542 0.88657 0.89368 0.90377 0.87921 0.89107 0.76553 0.76691 0.91974 0.91987 0.95803 0.96313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.07 10.08 55.49 0.56 -26.51 16 2 C -0.01 -0.35 5.49 -17.43 -0.10 -0.44 16 3 Si 0.91 22.56 29.55 -169.99 -5.02 17.54 16 4 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 7 C -0.22 -6.20 10.28 -15.06 -0.15 -6.36 16 8 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 9 N -0.60 -15.40 2.93 -169.58 -0.50 -15.90 16 10 C 0.16 3.75 5.18 -1.91 -0.01 3.74 16 11 C -0.11 -2.08 3.72 -88.56 -0.33 -2.41 16 12 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 13 C -0.10 -1.84 4.81 -26.93 -0.13 -1.97 16 14 C -0.12 -1.78 5.52 -26.77 -0.15 -1.93 16 15 C 0.14 1.97 2.31 -67.86 -0.16 1.82 16 16 H 0.09 1.67 6.20 -51.93 -0.32 1.35 16 17 N -0.73 -7.38 5.10 -53.74 -0.27 -7.66 16 18 C 0.51 5.77 7.81 -10.98 -0.09 5.69 16 19 O -0.53 -8.95 15.65 5.56 0.09 -8.86 16 20 C -0.14 -0.82 5.70 -27.88 -0.16 -0.98 16 21 C -0.12 -0.90 4.72 -26.73 -0.13 -1.03 16 22 C 0.13 0.62 6.55 -4.04 -0.03 0.59 16 23 N -0.38 -3.06 3.69 -62.63 -0.23 -3.29 16 24 C 0.25 1.79 12.63 -90.65 -1.14 0.64 16 25 N -0.55 -5.43 11.19 -15.83 -0.18 -5.61 16 26 C 0.20 1.90 13.03 -91.81 -1.20 0.71 16 27 N -0.31 -3.42 12.57 29.29 0.37 -3.05 16 28 C -0.11 -1.35 4.83 -27.87 -0.13 -1.49 16 29 C -0.09 -1.52 2.69 -90.93 -0.24 -1.76 16 30 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 31 C 0.14 2.92 6.25 -3.34 -0.02 2.90 16 32 H 0.25 7.19 8.31 -40.82 -0.34 6.86 16 33 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 34 H 0.11 2.96 5.68 -51.93 -0.30 2.67 16 35 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 36 H 0.08 1.72 7.17 -51.93 -0.37 1.35 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 39 H 0.40 2.58 8.61 -40.82 -0.35 2.23 16 40 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 42 H 0.09 0.96 8.10 -51.93 -0.42 0.54 16 43 H 0.08 0.76 8.10 -51.93 -0.42 0.34 16 44 H 0.10 0.13 8.09 -51.93 -0.42 -0.29 16 45 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 46 H 0.22 0.49 8.06 -52.49 -0.42 0.07 16 47 H 0.22 1.38 8.06 -52.49 -0.42 0.96 16 48 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 49 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 50 H 0.02 0.51 6.49 -51.93 -0.34 0.18 16 51 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 LS Contribution 402.01 15.07 6.06 6.06 Total: -1.00 -37.17 402.01 -11.70 -48.87 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -8.40 Total: 0.71 kcal Atomic # 6 Polarization: 1.87 SS G_CDS: -4.16 Total: -2.29 kcal Atomic # 7 Polarization: -61.77 SS G_CDS: -0.25 Total: -62.02 kcal Atomic # 8 Polarization: -8.95 SS G_CDS: 0.09 Total: -8.86 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -37.17 -11.70 -48.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700617841.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.057 kcal (2) G-P(sol) polarization free energy of solvation -37.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds