Wall clock time and date at job start Wed Apr 1 2020 05:22:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99943 * 2 1 4 4 H 1.48494 * 109.47325 * 240.00214 * 3 2 1 5 5 H 1.48501 * 109.47226 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47020 * 120.00025 * 3 2 1 7 7 C 1.38810 * 119.99962 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99762 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99995 * 359.97438 * 7 2 1 10 10 C 1.47620 * 125.72609 * 0.02562 * 9 7 2 11 11 C 1.55842 * 104.46929 * 204.86610 * 10 9 7 12 12 H 1.09004 * 113.42984 * 201.16172 * 11 10 9 13 13 C 1.52983 * 106.36780 * 77.06102 * 11 10 9 14 14 C 1.52625 * 110.93084 * 198.11069 * 13 11 10 15 15 C 1.53296 * 108.50617 * 62.20504 * 14 13 11 16 16 H 1.08997 * 109.71468 * 55.92891 * 15 14 13 17 17 N 1.46496 * 109.71273 * 176.52658 * 15 14 13 18 18 C 1.34777 * 120.00271 * 274.39767 * 17 15 14 19 19 O 1.21278 * 119.99854 * 0.02562 * 18 17 15 20 20 C 1.50703 * 120.00161 * 180.02562 * 18 17 15 21 21 C 1.53000 * 109.46912 * 180.02562 * 20 18 17 22 22 C 1.53001 * 109.46886 * 180.02562 * 21 20 18 23 23 N 1.46500 * 109.47299 * 179.97438 * 22 21 20 24 24 C 1.34430 * 126.82414 * 124.99303 * 23 22 21 25 25 N 1.30833 * 108.07734 * 179.97438 * 24 23 22 26 26 C 1.33247 * 109.82759 * 0.02562 * 25 24 23 27 27 N 1.30710 * 108.94746 * 359.74681 * 26 25 24 28 28 C 1.52838 * 108.25290 * 296.22863 * 15 14 13 29 29 C 1.50897 * 111.56344 * 58.98419 * 28 15 14 30 30 H 1.09003 * 108.32322 * 186.73762 * 29 28 15 31 31 C 1.47424 * 125.72721 * 180.02562 * 9 7 2 32 32 H 0.96999 * 120.00386 * 359.97438 * 1 2 3 33 33 H 1.09002 * 110.43441 * 86.12156 * 10 9 7 34 34 H 1.09001 * 110.43590 * 323.61516 * 10 9 7 35 35 H 1.09002 * 109.19196 * 77.73631 * 13 11 10 36 36 H 1.09001 * 109.18557 * 318.48141 * 13 11 10 37 37 H 1.08997 * 109.62910 * 302.49524 * 14 13 11 38 38 H 1.09004 * 109.79252 * 182.00630 * 14 13 11 39 39 H 0.97005 * 120.00266 * 94.40350 * 17 15 14 40 40 H 1.09002 * 109.47152 * 60.00245 * 20 18 17 41 41 H 1.09001 * 109.46980 * 300.00345 * 20 18 17 42 42 H 1.09001 * 109.47194 * 299.99742 * 21 20 18 43 43 H 1.08992 * 109.47399 * 59.99914 * 21 20 18 44 44 H 1.09001 * 109.47109 * 299.99380 * 22 21 20 45 45 H 1.09002 * 109.47508 * 59.99571 * 22 21 20 46 46 H 1.08001 * 125.96153 * 0.02562 * 24 23 22 47 47 H 1.08001 * 125.52747 * 180.02562 * 26 25 24 48 48 H 1.08998 * 109.06170 * 179.57151 * 28 15 14 49 49 H 1.09001 * 109.06002 * 298.49853 * 28 15 14 50 50 H 1.09007 * 110.04571 * 60.06642 * 31 9 7 51 51 H 1.08997 * 110.04655 * 298.59780 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1433 -2.5353 -0.0005 11 6 -0.3942 -3.9364 0.6340 12 1 -1.3685 -4.3569 0.3849 13 6 -0.1995 -3.7679 2.1420 14 6 0.0220 -5.1185 2.8175 15 6 1.3059 -5.7391 2.2552 16 1 2.1386 -5.0494 2.3931 17 7 1.5889 -6.9998 2.9455 18 6 2.2717 -6.9933 4.1075 19 8 2.6515 -5.9437 4.5818 20 6 2.5633 -8.2903 4.8174 21 6 3.3442 -8.0043 6.1017 22 6 3.6408 -9.3212 6.8220 23 7 4.3891 -9.0475 8.0515 24 6 4.0584 -9.4284 9.2976 25 7 4.9815 -8.9898 10.1145 26 6 5.9130 -8.3271 9.4300 27 7 5.5970 -8.3395 8.1617 28 6 1.0968 -6.0032 0.7644 29 6 0.7704 -4.7339 0.0166 30 1 0.5146 -4.9969 -1.0098 31 6 1.9315 -3.7320 -0.0005 32 1 -0.4851 0.8400 0.0004 33 1 -0.5289 -2.5046 -1.0196 34 1 -0.6041 -1.7551 0.6054 35 1 -1.0853 -3.2957 2.5671 36 1 0.6664 -3.1309 2.3224 37 1 -0.8233 -5.7746 2.6101 38 1 0.1229 -4.9806 3.8941 39 1 1.2849 -7.8393 2.5663 40 1 3.1553 -8.9350 4.1677 41 1 1.6256 -8.7873 5.0657 42 1 4.2820 -7.5071 5.8536 43 1 2.7520 -7.3599 6.7511 44 1 2.7033 -9.8188 7.0701 45 1 4.2333 -9.9654 6.1723 46 1 3.1839 -9.9978 9.5757 47 1 6.7896 -7.8597 9.8537 48 1 2.0059 -6.4382 0.3490 49 1 0.2764 -6.7100 0.6398 50 1 2.5509 -3.8625 0.8869 51 1 2.5319 -3.8711 -0.8996 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700617841.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:22:43 Heat of formation + Delta-G solvation = 42.951654 kcal Electronic energy + Delta-G solvation = -30310.117333 eV Core-core repulsion = 26245.425827 eV Total energy + Delta-G solvation = -4064.691505 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.94618 -41.37269 -40.21639 -37.10972 -36.37733 -34.94498 -33.48258 -33.01519 -32.18139 -32.12555 -30.65421 -28.39912 -27.47884 -26.58757 -24.27688 -23.65778 -22.90583 -22.72917 -22.04219 -21.64538 -21.28148 -19.65777 -18.94122 -18.40202 -17.57444 -17.48992 -17.03978 -16.82315 -16.46190 -16.07599 -15.73386 -15.55494 -15.36536 -15.24824 -15.00726 -14.84237 -14.57043 -14.05571 -13.86466 -13.78167 -13.59057 -13.36694 -13.27761 -13.03813 -12.93377 -12.74669 -12.66459 -12.55201 -12.47079 -12.23304 -12.13541 -11.81701 -11.81199 -11.74951 -11.29261 -11.12326 -10.99773 -10.89163 -10.80317 -10.77119 -10.69976 -10.56299 -9.95764 -8.86333 -7.78578 -5.21769 0.73214 1.41048 1.44599 1.48422 1.50650 1.73354 2.02677 2.25978 2.46827 3.29482 3.51671 3.55410 3.68256 3.71140 3.72055 3.78066 3.90526 4.05455 4.14157 4.16457 4.19565 4.25936 4.32480 4.37555 4.50738 4.54989 4.56956 4.59565 4.66741 4.70624 4.72790 4.82216 4.92979 5.03010 5.07680 5.12476 5.21725 5.25226 5.25612 5.33079 5.35500 5.43300 5.47762 5.50190 5.52172 5.63128 5.74248 5.86084 5.99555 6.32873 6.69208 7.10672 7.14382 7.41833 7.78438 8.42632 9.22189 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.014340 B = 0.001967 C = 0.001805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1952.114694 B =14232.707952 C =15511.974902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.067 4.067 3 Si 0.976 3.024 4 H -0.277 1.277 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.239 4.239 8 H 0.072 0.928 9 N -0.623 5.623 10 C 0.155 3.845 11 C -0.095 4.095 12 H 0.107 0.893 13 C -0.096 4.096 14 C -0.109 4.109 15 C 0.149 3.851 16 H 0.044 0.956 17 N -0.707 5.707 18 C 0.499 3.501 19 O -0.600 6.600 20 C -0.122 4.122 21 C -0.111 4.111 22 C 0.129 3.871 23 N -0.383 5.383 24 C 0.259 3.741 25 N -0.584 5.584 26 C 0.186 3.814 27 N -0.358 5.358 28 C -0.095 4.095 29 C -0.079 4.079 30 H 0.081 0.919 31 C 0.133 3.867 32 H 0.247 0.753 33 H -0.016 1.016 34 H 0.072 0.928 35 H 0.051 0.949 36 H 0.025 0.975 37 H 0.094 0.906 38 H 0.041 0.959 39 H 0.421 0.579 40 H 0.130 0.870 41 H 0.141 0.859 42 H 0.043 0.957 43 H 0.049 0.951 44 H 0.153 0.847 45 H 0.107 0.893 46 H 0.266 0.734 47 H 0.232 0.768 48 H 0.079 0.921 49 H 0.108 0.892 50 H 0.013 0.987 51 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.256 -30.098 11.330 32.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.260 4.260 3 Si 0.805 3.195 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.209 1.209 7 C -0.368 4.368 8 H 0.090 0.910 9 N -0.349 5.349 10 C 0.030 3.970 11 C -0.114 4.114 12 H 0.125 0.875 13 C -0.134 4.134 14 C -0.147 4.147 15 C 0.043 3.957 16 H 0.062 0.938 17 N -0.360 5.360 18 C 0.287 3.713 19 O -0.480 6.480 20 C -0.161 4.161 21 C -0.150 4.150 22 C 0.008 3.992 23 N -0.174 5.174 24 C -0.036 4.036 25 N -0.312 5.312 26 C -0.117 4.117 27 N -0.187 5.187 28 C -0.133 4.133 29 C -0.098 4.098 30 H 0.100 0.900 31 C 0.008 3.992 32 H 0.056 0.944 33 H 0.002 0.998 34 H 0.090 0.910 35 H 0.070 0.930 36 H 0.044 0.956 37 H 0.112 0.888 38 H 0.060 0.940 39 H 0.259 0.741 40 H 0.148 0.852 41 H 0.159 0.841 42 H 0.062 0.938 43 H 0.068 0.932 44 H 0.170 0.830 45 H 0.125 0.875 46 H 0.281 0.719 47 H 0.248 0.752 48 H 0.097 0.903 49 H 0.126 0.874 50 H 0.031 0.969 51 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 0.385 -28.893 11.340 31.041 hybrid contribution 0.526 1.751 -0.351 1.862 sum 0.910 -27.141 10.989 29.296 Atomic orbital electron populations 1.70031 1.05943 1.24930 1.58630 1.25576 0.96702 1.00740 1.02945 0.85183 0.77226 0.79131 0.78000 1.20324 1.21532 1.20937 1.19363 0.90739 0.84223 1.42485 0.91015 1.44852 1.02855 1.00649 1.86511 1.22061 0.83784 0.95163 0.95980 1.22492 0.98511 0.95907 0.94533 0.87485 1.21222 1.00214 0.96893 0.95085 1.21746 0.98265 0.96360 0.98330 1.20744 0.96523 0.85741 0.92653 0.93809 1.45882 1.56818 1.09997 1.23267 1.21570 0.76456 0.92230 0.81014 1.90769 1.53916 1.36278 1.67051 1.21602 1.04658 0.93819 0.96070 1.21444 1.00260 0.96910 0.96435 1.22207 0.97486 0.97182 0.82282 1.50779 1.17004 1.39932 1.09680 1.27001 0.99893 0.96567 0.80170 1.70534 1.05779 1.19346 1.35571 1.26465 1.00143 0.97682 0.87399 1.78019 1.00398 1.18856 1.21409 1.21128 1.03892 0.96681 0.91637 1.21207 0.94314 0.93945 1.00340 0.90019 1.21426 0.95546 0.85379 0.96826 0.94368 0.99827 0.90978 0.92987 0.95617 0.88780 0.94025 0.74082 0.85168 0.84086 0.93815 0.93182 0.82965 0.87500 0.71865 0.75183 0.90271 0.87398 0.96944 0.96361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.12 10.08 21.65 0.22 -57.90 16 2 C -0.07 -3.99 5.49 84.86 0.47 -3.52 16 3 Si 0.98 48.07 29.55 68.60 2.03 50.10 16 4 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 5 H -0.29 -14.10 7.11 99.48 0.71 -13.40 16 6 H -0.28 -13.71 7.11 99.48 0.71 -13.00 16 7 C -0.24 -14.18 10.28 84.03 0.86 -13.32 16 8 H 0.07 4.16 7.83 -2.91 -0.02 4.14 16 9 N -0.62 -33.44 2.93 -690.42 -2.02 -35.46 16 10 C 0.16 7.76 5.18 87.15 0.45 8.21 16 11 C -0.10 -3.39 3.72 -9.46 -0.04 -3.42 16 12 H 0.11 3.13 8.14 -2.39 -0.02 3.11 16 13 C -0.10 -3.52 4.81 30.46 0.15 -3.37 16 14 C -0.11 -3.01 5.52 30.57 0.17 -2.84 16 15 C 0.15 3.84 2.31 45.04 0.10 3.95 16 16 H 0.04 1.61 6.20 -2.39 -0.01 1.60 16 17 N -0.71 -12.00 5.10 -442.33 -2.25 -14.25 16 18 C 0.50 10.50 7.81 87.66 0.68 11.19 16 19 O -0.60 -21.10 15.65 -3.02 -0.05 -21.14 16 20 C -0.12 -0.98 5.70 29.85 0.17 -0.81 16 21 C -0.11 -1.57 4.72 30.59 0.14 -1.43 16 22 C 0.13 0.79 6.55 86.38 0.57 1.36 16 23 N -0.38 -5.59 3.69 -352.05 -1.30 -6.88 16 24 C 0.26 3.11 12.63 180.36 2.28 5.39 16 25 N -0.58 -11.18 11.19 -204.00 -2.28 -13.46 16 26 C 0.19 3.71 13.03 180.76 2.36 6.07 16 27 N -0.36 -8.02 12.57 -61.24 -0.77 -8.79 16 28 C -0.10 -2.04 4.83 29.86 0.14 -1.90 16 29 C -0.08 -2.48 2.69 -11.00 -0.03 -2.51 16 30 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 31 C 0.13 5.71 6.25 86.33 0.54 6.25 16 32 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 33 H -0.02 -0.87 8.14 -2.39 -0.02 -0.89 16 34 H 0.07 4.15 5.68 -2.39 -0.01 4.14 16 35 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.02 1.19 7.17 -2.39 -0.02 1.18 16 37 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.04 1.30 8.14 -2.38 -0.02 1.28 16 39 H 0.42 3.00 8.61 -92.70 -0.80 2.20 16 40 H 0.13 0.28 8.14 -2.39 -0.02 0.26 16 41 H 0.14 -0.04 8.14 -2.39 -0.02 -0.06 16 42 H 0.04 1.00 8.10 -2.39 -0.02 0.98 16 43 H 0.05 0.97 8.10 -2.39 -0.02 0.95 16 44 H 0.15 -0.55 8.09 -2.39 -0.02 -0.57 16 45 H 0.11 0.37 8.14 -2.39 -0.02 0.35 16 46 H 0.27 0.05 8.06 -2.91 -0.02 0.03 16 47 H 0.23 3.21 8.06 -2.91 -0.02 3.19 16 48 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 49 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 50 H 0.01 0.57 6.49 -2.38 -0.02 0.55 16 51 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 Total: -1.00 -93.77 402.01 2.72 -91.05 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: 0.13 Total: 7.45 kcal Atomic # 6 Polarization: 0.27 SS G_CDS: 9.02 Total: 9.29 kcal Atomic # 7 Polarization: -128.34 SS G_CDS: -8.41 Total: -136.75 kcal Atomic # 8 Polarization: -21.10 SS G_CDS: -0.05 Total: -21.14 kcal Atomic # 14 Polarization: 48.07 SS G_CDS: 2.03 Total: 50.10 kcal Total: -93.77 2.72 -91.05 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700617841.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.002 kcal (2) G-P(sol) polarization free energy of solvation -93.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.050 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds