Wall clock time and date at job start Wed Apr 1 2020 05:05:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86805 * 120.00032 * 2 1 4 4 H 1.48495 * 109.46976 * 271.97855 * 3 2 1 5 5 H 1.48504 * 109.46816 * 31.97629 * 3 2 1 6 6 H 1.48496 * 109.47093 * 151.97346 * 3 2 1 7 7 C 1.38810 * 120.00122 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00049 * 339.43880 * 7 2 1 9 9 N 1.36937 * 119.99922 * 159.44263 * 7 2 1 10 10 C 1.47077 * 120.88150 * 333.51290 * 9 7 2 11 11 C 1.53244 * 108.51775 * 231.16159 * 10 9 7 12 12 N 1.46902 * 109.34251 * 306.17005 * 11 10 9 13 13 C 1.46898 * 110.99878 * 187.25606 * 12 11 10 14 14 C 1.53005 * 109.46682 * 170.00190 * 13 12 11 15 15 C 1.52995 * 109.46708 * 179.97438 * 14 13 12 16 16 N 1.46498 * 109.47264 * 179.97438 * 15 14 13 17 17 C 1.34777 * 120.00568 * 179.97438 * 16 15 14 18 18 O 1.21566 * 119.99788 * 359.97438 * 17 16 15 19 19 C 1.47714 * 120.00096 * 179.72664 * 17 16 15 20 20 C 1.41505 * 126.51485 * 180.28128 * 19 17 16 21 21 C 1.35364 * 105.49990 * 179.97438 * 20 19 17 22 22 C 1.50697 * 126.38395 * 180.02562 * 21 20 19 23 23 C 1.53002 * 117.49866 * 213.74226 * 22 21 20 24 24 C 1.53004 * 117.50047 * 145.08519 * 22 21 20 25 25 N 1.35034 * 107.22878 * 359.97438 * 21 20 19 26 26 H 0.97004 * 124.88304 * 180.02562 * 25 21 20 27 27 N 1.28462 * 110.23107 * 359.73056 * 25 21 20 28 28 C 1.46903 * 111.26879 * 63.10191 * 12 11 10 29 29 C 1.47080 * 120.87811 * 153.48721 * 9 7 2 30 30 H 0.97001 * 119.99790 * 359.97438 * 1 2 3 31 31 H 1.08995 * 109.63267 * 111.45318 * 10 9 7 32 32 H 1.09001 * 109.79006 * 350.96378 * 10 9 7 33 33 H 1.08994 * 109.49443 * 186.20799 * 11 10 9 34 34 H 1.09004 * 109.49436 * 66.12969 * 11 10 9 35 35 H 1.08998 * 109.47488 * 49.99947 * 13 12 11 36 36 H 1.09001 * 109.46764 * 289.99220 * 13 12 11 37 37 H 1.08998 * 109.47358 * 59.99677 * 14 13 12 38 38 H 1.09001 * 109.46728 * 299.99051 * 14 13 12 39 39 H 1.09005 * 109.47746 * 59.99618 * 15 14 13 40 40 H 1.09004 * 109.47213 * 299.99384 * 15 14 13 41 41 H 0.97002 * 119.99584 * 359.97438 * 16 15 14 42 42 H 1.07995 * 127.25112 * 359.97438 * 20 19 17 43 43 H 1.08996 * 115.55216 * 359.40900 * 22 21 20 44 44 H 1.09008 * 117.49521 * 0.02562 * 23 22 21 45 45 H 1.08998 * 117.49959 * 145.01523 * 23 22 21 46 46 H 1.08998 * 117.49819 * 214.97738 * 24 22 21 47 47 H 1.08995 * 117.49551 * 359.96811 * 24 22 21 48 48 H 1.08997 * 109.49040 * 56.85639 * 28 12 11 49 49 H 1.08993 * 109.49094 * 176.93937 * 28 12 11 50 50 H 1.09006 * 109.63058 * 248.54473 * 29 9 7 51 51 H 1.09001 * 109.63260 * 9.12745 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4558 2.0706 -1.3992 5 1 1.4691 2.6403 0.7415 6 1 3.5680 1.4285 0.6578 7 6 2.0103 -1.2021 0.0005 8 1 1.5219 -2.1075 0.3294 9 7 3.3142 -1.2400 -0.4159 10 6 3.8307 -0.2483 -1.3713 11 6 4.5272 -0.9920 -2.5160 12 7 5.5363 -1.9039 -1.9608 13 6 6.3439 -2.5082 -3.0287 14 6 7.5326 -3.2486 -2.4122 15 6 8.3734 -3.8786 -3.5244 16 7 9.5119 -4.5869 -2.9342 17 6 10.3950 -5.2235 -3.7288 18 8 10.2466 -5.2102 -4.9353 19 6 11.5462 -5.9326 -3.1340 20 6 12.5542 -6.6371 -3.8339 21 6 13.3892 -7.1151 -2.8817 22 6 14.6302 -7.9383 -3.1123 23 6 14.9814 -8.9958 -2.0638 24 6 15.8123 -7.7144 -2.1671 25 7 12.9034 -6.7158 -1.6868 26 1 13.3066 -6.9186 -0.8281 27 7 11.8338 -6.0235 -1.8510 28 6 4.9161 -2.9372 -1.1208 29 6 4.2356 -2.2732 0.0810 30 1 -0.4850 0.8401 0.0004 31 1 4.5453 0.4049 -0.8708 32 1 3.0073 0.3456 -1.7681 33 1 5.0112 -0.2723 -3.1760 34 1 3.7903 -1.5645 -3.0794 35 1 6.7087 -1.7266 -3.6951 36 1 5.7317 -3.2110 -3.5938 37 1 7.1678 -4.0302 -1.7458 38 1 8.1448 -2.5458 -1.8471 39 1 8.7382 -3.0972 -4.1912 40 1 7.7609 -4.5814 -4.0892 41 1 9.6300 -4.5979 -1.9715 42 1 12.6395 -6.7663 -4.9028 43 1 14.8551 -8.1682 -4.1537 44 1 14.3145 -9.0963 -1.2074 45 1 15.4376 -9.9212 -2.4155 46 1 16.8149 -7.7972 -2.5866 47 1 15.6925 -6.9713 -1.3788 48 1 4.1738 -3.4826 -1.7036 49 1 5.6823 -3.6280 -0.7690 50 1 4.9892 -1.8146 0.7212 51 1 3.6777 -3.0208 0.6449 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713803203.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:38 Heat of formation + Delta-G solvation = 97.293083 kcal Electronic energy + Delta-G solvation = -29150.236137 eV Core-core repulsion = 25087.901053 eV Total energy + Delta-G solvation = -4062.335084 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.21096 -39.64519 -38.48577 -37.82886 -35.93902 -34.49145 -32.51014 -31.93570 -31.23229 -30.69179 -30.25505 -27.21916 -25.20638 -24.17997 -23.55177 -23.14836 -23.04539 -22.12352 -21.59385 -21.29766 -20.00909 -19.37618 -18.26671 -17.21388 -16.85864 -16.40528 -16.31731 -15.98449 -15.73874 -15.36682 -14.79548 -14.71142 -14.50810 -14.19763 -14.09526 -13.99015 -13.90784 -13.68928 -13.25305 -12.82013 -12.51561 -12.36360 -12.29472 -12.23640 -11.77155 -11.64256 -11.61328 -11.58049 -11.43203 -11.15373 -11.02446 -10.82817 -10.47677 -10.39499 -10.28128 -10.03771 -9.86442 -9.76982 -9.43354 -9.29527 -9.25847 -8.62738 -7.97997 -6.93440 -5.92408 -3.27400 1.14080 1.54884 2.29408 2.89390 3.10844 3.22545 3.34769 3.51406 3.56139 3.73858 3.98682 4.04335 4.18635 4.19104 4.41162 4.56109 4.76300 4.85958 4.86752 4.99539 5.02037 5.08256 5.11967 5.17659 5.23228 5.30213 5.35952 5.44383 5.46125 5.55993 5.65980 5.71820 5.77177 5.90214 5.93872 6.00502 6.05852 6.11673 6.13142 6.21104 6.27379 6.42679 6.43917 6.60133 6.67720 6.90720 7.16125 7.44763 7.44968 7.49101 7.95565 7.96952 8.34827 8.95764 9.74499 10.14126 11.23674 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.028988 B = 0.001477 C = 0.001447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.674067 B =18953.651875 C =19344.004553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.022 3.978 3 Si 0.884 3.116 4 H -0.289 1.289 5 H -0.304 1.304 6 H -0.270 1.270 7 C -0.259 4.259 8 H 0.085 0.915 9 N -0.609 5.609 10 C 0.130 3.870 11 C 0.044 3.956 12 N -0.535 5.535 13 C 0.058 3.942 14 C -0.128 4.128 15 C 0.120 3.880 16 N -0.715 5.715 17 C 0.603 3.397 18 O -0.532 6.532 19 C -0.009 4.009 20 C -0.169 4.169 21 C 0.047 3.953 22 C -0.088 4.088 23 C -0.173 4.173 24 C -0.173 4.173 25 N -0.379 5.379 26 H 0.443 0.557 27 N -0.254 5.254 28 C 0.039 3.961 29 C 0.152 3.848 30 H 0.262 0.738 31 H 0.032 0.968 32 H 0.074 0.926 33 H 0.065 0.935 34 H 0.036 0.964 35 H 0.073 0.927 36 H 0.033 0.967 37 H 0.071 0.929 38 H 0.078 0.922 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.408 0.592 42 H 0.164 0.836 43 H 0.134 0.866 44 H 0.094 0.906 45 H 0.107 0.893 46 H 0.107 0.893 47 H 0.094 0.906 48 H 0.032 0.968 49 H 0.068 0.932 50 H 0.029 0.971 51 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.824 -16.847 -5.518 37.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.177 4.177 3 Si 0.715 3.285 4 H -0.216 1.216 5 H -0.232 1.232 6 H -0.195 1.195 7 C -0.387 4.387 8 H 0.103 0.897 9 N -0.333 5.333 10 C 0.004 3.996 11 C -0.086 4.086 12 N -0.260 5.260 13 C -0.071 4.071 14 C -0.166 4.166 15 C -0.004 4.004 16 N -0.367 5.367 17 C 0.387 3.613 18 O -0.407 6.407 19 C -0.170 4.170 20 C -0.197 4.197 21 C -0.079 4.079 22 C -0.108 4.108 23 C -0.211 4.211 24 C -0.211 4.211 25 N -0.094 5.094 26 H 0.288 0.712 27 N -0.090 5.090 28 C -0.090 4.090 29 C 0.026 3.974 30 H 0.072 0.928 31 H 0.050 0.950 32 H 0.092 0.908 33 H 0.084 0.916 34 H 0.054 0.946 35 H 0.091 0.909 36 H 0.051 0.949 37 H 0.090 0.910 38 H 0.097 0.903 39 H 0.089 0.911 40 H 0.088 0.912 41 H 0.243 0.757 42 H 0.182 0.818 43 H 0.152 0.848 44 H 0.113 0.887 45 H 0.126 0.874 46 H 0.126 0.874 47 H 0.113 0.887 48 H 0.051 0.949 49 H 0.086 0.914 50 H 0.047 0.953 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 32.386 -16.103 -5.070 36.522 hybrid contribution 0.428 0.148 -0.337 0.564 sum 32.814 -15.955 -5.407 36.886 Atomic orbital electron populations 1.69840 1.05727 1.26525 1.53244 1.25257 0.95234 0.97601 0.99600 0.86940 0.79981 0.84536 0.77076 1.21632 1.23208 1.19479 1.18935 0.84833 0.94810 1.40138 0.89722 1.44406 1.08489 1.32255 1.48131 1.21425 0.96492 0.91975 0.89711 1.22630 0.92809 0.95483 0.97634 1.61914 1.24470 1.18931 1.20649 1.21952 0.94007 0.97599 0.93492 1.21799 0.96889 1.00241 0.97672 1.21398 0.86573 0.96117 0.96265 1.45857 1.26524 1.53403 1.10870 1.16849 0.80506 0.78064 0.85910 1.90810 1.74854 1.61285 1.13712 1.21929 0.99705 1.05671 0.89659 1.21452 0.94800 1.02797 1.00628 1.20463 0.98403 1.03193 0.85808 1.20546 0.91251 1.00439 0.98555 1.23120 1.03243 0.94137 1.00574 1.23120 0.96258 0.99796 1.01883 1.43207 1.18804 1.38365 1.08996 0.71233 1.73568 1.02602 1.12975 1.19864 1.22694 0.96754 0.93235 0.96352 1.21006 0.92024 0.91565 0.92850 0.92807 0.94981 0.90776 0.91621 0.94608 0.90852 0.94918 0.90995 0.90297 0.91074 0.91209 0.75721 0.81806 0.84782 0.88738 0.87416 0.87425 0.88735 0.94939 0.91391 0.95255 0.91759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.18 13.97 55.49 0.78 -27.41 16 2 C 0.02 0.64 5.24 -17.43 -0.09 0.54 16 3 Si 0.88 22.72 24.31 -169.99 -4.13 18.59 16 4 H -0.29 -7.12 6.58 56.52 0.37 -6.74 16 5 H -0.30 -7.92 7.11 56.52 0.40 -7.52 16 6 H -0.27 -6.88 6.61 56.52 0.37 -6.50 16 7 C -0.26 -7.35 10.08 -15.06 -0.15 -7.50 16 8 H 0.09 2.55 8.05 -52.49 -0.42 2.13 16 9 N -0.61 -14.80 2.82 -172.01 -0.48 -15.29 16 10 C 0.13 2.91 4.35 -3.60 -0.02 2.89 16 11 C 0.04 0.80 5.62 -3.70 -0.02 0.78 16 12 N -0.53 -8.73 4.63 -234.32 -1.08 -9.81 16 13 C 0.06 0.74 4.96 -3.82 -0.02 0.72 16 14 C -0.13 -1.33 5.26 -26.73 -0.14 -1.47 16 15 C 0.12 1.24 5.67 -4.05 -0.02 1.21 16 16 N -0.71 -7.34 5.55 -61.29 -0.34 -7.68 16 17 C 0.60 7.33 7.83 -12.39 -0.10 7.24 16 18 O -0.53 -8.05 16.93 5.31 0.09 -7.96 16 19 C -0.01 -0.09 7.13 -82.76 -0.59 -0.68 16 20 C -0.17 -1.50 10.73 -39.36 -0.42 -1.92 16 21 C 0.05 0.30 6.64 -82.21 -0.55 -0.25 16 22 C -0.09 -0.32 6.26 -91.77 -0.57 -0.90 16 23 C -0.17 -0.40 10.22 -26.69 -0.27 -0.67 16 24 C -0.17 -0.40 10.23 -26.69 -0.27 -0.67 16 25 N -0.38 -2.34 6.80 33.50 0.23 -2.11 16 26 H 0.44 1.31 8.96 -190.44 -1.71 -0.40 16 27 N -0.25 -2.29 11.92 33.42 0.40 -1.89 16 28 C 0.04 0.65 5.46 -3.70 -0.02 0.63 16 29 C 0.15 3.05 6.69 -3.60 -0.02 3.02 16 30 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 31 H 0.03 0.73 6.94 -51.93 -0.36 0.37 16 32 H 0.07 1.80 4.61 -51.93 -0.24 1.56 16 33 H 0.07 1.05 7.99 -51.93 -0.41 0.64 16 34 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.87 7.97 -51.93 -0.41 0.46 16 36 H 0.03 0.42 8.12 -51.93 -0.42 0.00 16 37 H 0.07 0.75 6.40 -51.93 -0.33 0.41 16 38 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 39 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.41 3.59 8.20 -40.82 -0.33 3.25 16 42 H 0.16 1.31 8.06 -52.49 -0.42 0.89 16 43 H 0.13 0.37 8.14 -51.93 -0.42 -0.06 16 44 H 0.09 0.19 8.14 -51.92 -0.42 -0.23 16 45 H 0.11 0.16 8.14 -51.93 -0.42 -0.26 16 46 H 0.11 0.16 8.14 -51.93 -0.42 -0.26 16 47 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 48 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 49 H 0.07 0.95 6.16 -51.93 -0.32 0.63 16 50 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 51 H 0.06 1.26 7.95 -51.93 -0.41 0.85 16 LS Contribution 406.89 15.07 6.13 6.13 Total: -1.00 -35.09 406.89 -11.35 -46.44 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -9.65 Total: -1.98 kcal Atomic # 6 Polarization: 6.26 SS G_CDS: -3.28 Total: 2.98 kcal Atomic # 7 Polarization: -63.68 SS G_CDS: -0.51 Total: -64.19 kcal Atomic # 8 Polarization: -8.05 SS G_CDS: 0.09 Total: -7.96 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -4.13 Total: 18.59 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -35.09 -11.35 -46.44 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713803203.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.728 kcal (2) G-P(sol) polarization free energy of solvation -35.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.435 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds