Wall clock time and date at job start Wed Apr 1 2020 05:05:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86805 * 120.00032 * 2 1 4 4 H 1.48495 * 109.46976 * 271.97855 * 3 2 1 5 5 H 1.48504 * 109.46816 * 31.97629 * 3 2 1 6 6 H 1.48496 * 109.47093 * 151.97346 * 3 2 1 7 7 C 1.38810 * 120.00122 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00049 * 339.43880 * 7 2 1 9 9 N 1.36937 * 119.99922 * 159.44263 * 7 2 1 10 10 C 1.47077 * 120.88150 * 333.51290 * 9 7 2 11 11 C 1.53244 * 108.51775 * 231.16159 * 10 9 7 12 12 N 1.46902 * 109.34251 * 306.17005 * 11 10 9 13 13 C 1.46898 * 110.99878 * 187.25606 * 12 11 10 14 14 C 1.53005 * 109.46682 * 170.00190 * 13 12 11 15 15 C 1.52995 * 109.46708 * 179.97438 * 14 13 12 16 16 N 1.46498 * 109.47264 * 179.97438 * 15 14 13 17 17 C 1.34777 * 120.00568 * 179.97438 * 16 15 14 18 18 O 1.21566 * 119.99788 * 359.97438 * 17 16 15 19 19 C 1.47714 * 120.00096 * 179.72664 * 17 16 15 20 20 C 1.41505 * 126.51485 * 180.28128 * 19 17 16 21 21 C 1.35364 * 105.49990 * 179.97438 * 20 19 17 22 22 C 1.50697 * 126.38395 * 180.02562 * 21 20 19 23 23 C 1.53002 * 117.49866 * 213.74226 * 22 21 20 24 24 C 1.53004 * 117.50047 * 145.08519 * 22 21 20 25 25 N 1.35034 * 107.22878 * 359.97438 * 21 20 19 26 26 H 0.97004 * 124.88304 * 180.02562 * 25 21 20 27 27 N 1.28462 * 110.23107 * 359.73056 * 25 21 20 28 28 C 1.46903 * 111.26879 * 63.10191 * 12 11 10 29 29 C 1.47080 * 120.87811 * 153.48721 * 9 7 2 30 30 H 0.97001 * 119.99790 * 359.97438 * 1 2 3 31 31 H 1.08995 * 109.63267 * 111.45318 * 10 9 7 32 32 H 1.09001 * 109.79006 * 350.96378 * 10 9 7 33 33 H 1.08994 * 109.49443 * 186.20799 * 11 10 9 34 34 H 1.09004 * 109.49436 * 66.12969 * 11 10 9 35 35 H 1.08998 * 109.47488 * 49.99947 * 13 12 11 36 36 H 1.09001 * 109.46764 * 289.99220 * 13 12 11 37 37 H 1.08998 * 109.47358 * 59.99677 * 14 13 12 38 38 H 1.09001 * 109.46728 * 299.99051 * 14 13 12 39 39 H 1.09005 * 109.47746 * 59.99618 * 15 14 13 40 40 H 1.09004 * 109.47213 * 299.99384 * 15 14 13 41 41 H 0.97002 * 119.99584 * 359.97438 * 16 15 14 42 42 H 1.07995 * 127.25112 * 359.97438 * 20 19 17 43 43 H 1.08996 * 115.55216 * 359.40900 * 22 21 20 44 44 H 1.09008 * 117.49521 * 0.02562 * 23 22 21 45 45 H 1.08998 * 117.49959 * 145.01523 * 23 22 21 46 46 H 1.08998 * 117.49819 * 214.97738 * 24 22 21 47 47 H 1.08995 * 117.49551 * 359.96811 * 24 22 21 48 48 H 1.08997 * 109.49040 * 56.85639 * 28 12 11 49 49 H 1.08993 * 109.49094 * 176.93937 * 28 12 11 50 50 H 1.09006 * 109.63058 * 248.54473 * 29 9 7 51 51 H 1.09001 * 109.63260 * 9.12745 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4558 2.0706 -1.3992 5 1 1.4691 2.6403 0.7415 6 1 3.5680 1.4285 0.6578 7 6 2.0103 -1.2021 0.0005 8 1 1.5219 -2.1075 0.3294 9 7 3.3142 -1.2400 -0.4159 10 6 3.8307 -0.2483 -1.3713 11 6 4.5272 -0.9920 -2.5160 12 7 5.5363 -1.9039 -1.9608 13 6 6.3439 -2.5082 -3.0287 14 6 7.5326 -3.2486 -2.4122 15 6 8.3734 -3.8786 -3.5244 16 7 9.5119 -4.5869 -2.9342 17 6 10.3950 -5.2235 -3.7288 18 8 10.2466 -5.2102 -4.9353 19 6 11.5462 -5.9326 -3.1340 20 6 12.5542 -6.6371 -3.8339 21 6 13.3892 -7.1151 -2.8817 22 6 14.6302 -7.9383 -3.1123 23 6 14.9814 -8.9958 -2.0638 24 6 15.8123 -7.7144 -2.1671 25 7 12.9034 -6.7158 -1.6868 26 1 13.3066 -6.9186 -0.8281 27 7 11.8338 -6.0235 -1.8510 28 6 4.9161 -2.9372 -1.1208 29 6 4.2356 -2.2732 0.0810 30 1 -0.4850 0.8401 0.0004 31 1 4.5453 0.4049 -0.8708 32 1 3.0073 0.3456 -1.7681 33 1 5.0112 -0.2723 -3.1760 34 1 3.7903 -1.5645 -3.0794 35 1 6.7087 -1.7266 -3.6951 36 1 5.7317 -3.2110 -3.5938 37 1 7.1678 -4.0302 -1.7458 38 1 8.1448 -2.5458 -1.8471 39 1 8.7382 -3.0972 -4.1912 40 1 7.7609 -4.5814 -4.0892 41 1 9.6300 -4.5979 -1.9715 42 1 12.6395 -6.7663 -4.9028 43 1 14.8551 -8.1682 -4.1537 44 1 14.3145 -9.0963 -1.2074 45 1 15.4376 -9.9212 -2.4155 46 1 16.8149 -7.7972 -2.5866 47 1 15.6925 -6.9713 -1.3788 48 1 4.1738 -3.4826 -1.7036 49 1 5.6823 -3.6280 -0.7690 50 1 4.9892 -1.8146 0.7212 51 1 3.6777 -3.0208 0.6449 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713803203.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:37 Heat of formation + Delta-G solvation = 70.933989 kcal Electronic energy + Delta-G solvation = -29151.379153 eV Core-core repulsion = 25087.901053 eV Total energy + Delta-G solvation = -4063.478100 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.80644 -40.56572 -39.91036 -38.08548 -37.17178 -35.87832 -33.87617 -33.09539 -32.33160 -31.91856 -31.38217 -28.70501 -26.38822 -25.20400 -24.75129 -24.13265 -23.45490 -23.28806 -22.35036 -22.12580 -21.09141 -20.73332 -18.82840 -18.74353 -17.89415 -17.49099 -17.07756 -16.99527 -16.56426 -16.39725 -16.03989 -15.93096 -15.80373 -15.46850 -15.32919 -15.17547 -14.85523 -14.64443 -14.41875 -14.32057 -13.98359 -13.61182 -13.18856 -13.12670 -12.95334 -12.68124 -12.51489 -12.47940 -12.26797 -12.18111 -12.06979 -12.02270 -11.89441 -11.61872 -11.59477 -11.47983 -11.37794 -11.26036 -10.71755 -10.55582 -10.10801 -9.79465 -9.35852 -8.89386 -8.17284 -5.48627 0.42991 0.96196 1.30114 1.41930 1.51910 1.76229 2.13881 2.29079 2.41564 2.90062 2.98946 3.07508 3.30785 3.37243 3.41964 3.76534 3.93849 3.99540 4.01973 4.09183 4.13792 4.19427 4.23791 4.31882 4.41444 4.51003 4.55312 4.57014 4.61541 4.64146 4.73773 4.74669 4.77556 4.81588 4.84583 4.99026 5.00028 5.02611 5.12862 5.17470 5.18329 5.22304 5.24963 5.31266 5.38649 5.82338 5.98020 6.08395 6.11785 6.23297 6.39551 6.79244 6.89576 7.09962 7.60873 8.03548 9.02634 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.028988 B = 0.001477 C = 0.001447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.674067 B =18953.651875 C =19344.004553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.958 5.958 2 C -0.035 4.035 3 Si 0.950 3.050 4 H -0.272 1.272 5 H -0.310 1.310 6 H -0.264 1.264 7 C -0.251 4.251 8 H 0.052 0.948 9 N -0.624 5.624 10 C 0.124 3.876 11 C 0.053 3.947 12 N -0.537 5.537 13 C 0.059 3.941 14 C -0.113 4.113 15 C 0.126 3.874 16 N -0.706 5.706 17 C 0.600 3.400 18 O -0.571 6.571 19 C -0.033 4.033 20 C -0.196 4.196 21 C 0.065 3.935 22 C -0.105 4.105 23 C -0.166 4.166 24 C -0.165 4.165 25 N -0.365 5.365 26 H 0.458 0.542 27 N -0.261 5.261 28 C 0.049 3.951 29 C 0.145 3.855 30 H 0.262 0.738 31 H 0.036 0.964 32 H 0.052 0.948 33 H 0.094 0.906 34 H 0.022 0.978 35 H 0.086 0.914 36 H 0.033 0.967 37 H 0.076 0.924 38 H 0.084 0.916 39 H 0.069 0.931 40 H 0.064 0.936 41 H 0.416 0.584 42 H 0.164 0.836 43 H 0.142 0.858 44 H 0.098 0.902 45 H 0.118 0.882 46 H 0.118 0.882 47 H 0.098 0.902 48 H 0.018 0.982 49 H 0.103 0.897 50 H 0.038 0.962 51 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 36.554 -17.382 -5.381 40.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.230 4.230 3 Si 0.778 3.222 4 H -0.198 1.198 5 H -0.239 1.239 6 H -0.189 1.189 7 C -0.380 4.380 8 H 0.069 0.931 9 N -0.349 5.349 10 C -0.001 4.001 11 C -0.077 4.077 12 N -0.262 5.262 13 C -0.069 4.069 14 C -0.151 4.151 15 C 0.002 3.998 16 N -0.357 5.357 17 C 0.385 3.615 18 O -0.448 6.448 19 C -0.193 4.193 20 C -0.223 4.223 21 C -0.061 4.061 22 C -0.125 4.125 23 C -0.203 4.203 24 C -0.203 4.203 25 N -0.081 5.081 26 H 0.306 0.694 27 N -0.098 5.098 28 C -0.080 4.080 29 C 0.020 3.980 30 H 0.071 0.929 31 H 0.054 0.946 32 H 0.071 0.929 33 H 0.113 0.887 34 H 0.041 0.959 35 H 0.104 0.896 36 H 0.051 0.949 37 H 0.095 0.905 38 H 0.102 0.898 39 H 0.088 0.912 40 H 0.082 0.918 41 H 0.253 0.747 42 H 0.181 0.819 43 H 0.160 0.840 44 H 0.117 0.883 45 H 0.136 0.864 46 H 0.136 0.864 47 H 0.117 0.883 48 H 0.037 0.963 49 H 0.121 0.879 50 H 0.056 0.944 51 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 36.171 -16.655 -4.907 40.123 hybrid contribution -0.648 0.169 -0.332 0.748 sum 35.523 -16.486 -5.238 39.511 Atomic orbital electron populations 1.69969 1.07401 1.27237 1.55798 1.25883 0.95841 1.00972 1.00298 0.85878 0.78467 0.80056 0.77753 1.19848 1.23902 1.18866 1.18890 0.86675 0.93650 1.38807 0.93051 1.44555 1.07734 1.33604 1.49032 1.21454 0.96027 0.92004 0.90594 1.22441 0.93108 0.96101 0.96045 1.61895 1.23586 1.18934 1.21795 1.22023 0.94021 0.98132 0.92735 1.21637 0.95931 1.00110 0.97414 1.21307 0.86454 0.95901 0.96165 1.45788 1.26031 1.52673 1.11190 1.17109 0.80955 0.77863 0.85559 1.90777 1.75922 1.62874 1.15266 1.21801 1.00019 1.06973 0.90516 1.21614 0.95496 1.03965 1.01273 1.20750 0.98394 1.01853 0.85089 1.20668 0.90758 1.01412 0.99643 1.23221 1.02908 0.94402 0.99789 1.23220 0.96149 0.99780 1.01117 1.43277 1.17908 1.37135 1.09826 0.69427 1.73494 1.03611 1.13629 1.19095 1.22553 0.97227 0.93298 0.94883 1.21202 0.91552 0.90652 0.94563 0.92941 0.94640 0.92945 0.88744 0.95941 0.89562 0.94874 0.90522 0.89768 0.91245 0.91785 0.74737 0.81884 0.84029 0.88336 0.86373 0.86363 0.88341 0.96337 0.87879 0.94412 0.92211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.09 13.97 21.65 0.30 -60.78 16 2 C -0.04 -2.10 5.24 84.86 0.44 -1.66 16 3 Si 0.95 47.44 24.31 68.60 1.67 49.11 16 4 H -0.27 -12.73 6.58 99.48 0.65 -12.07 16 5 H -0.31 -15.68 7.11 99.48 0.71 -14.98 16 6 H -0.26 -12.79 6.61 99.48 0.66 -12.13 16 7 C -0.25 -14.55 10.08 84.03 0.85 -13.71 16 8 H 0.05 3.25 8.05 -2.91 -0.02 3.22 16 9 N -0.62 -30.14 2.82 -698.12 -1.97 -32.11 16 10 C 0.12 5.39 4.35 86.35 0.38 5.77 16 11 C 0.05 1.81 5.62 86.38 0.49 2.29 16 12 N -0.54 -15.98 4.63 -895.24 -4.14 -20.12 16 13 C 0.06 1.32 4.96 86.31 0.43 1.74 16 14 C -0.11 -2.01 5.26 30.59 0.16 -1.85 16 15 C 0.13 2.36 5.67 86.38 0.49 2.85 16 16 N -0.71 -13.59 5.55 -466.10 -2.59 -16.17 16 17 C 0.60 14.47 7.83 86.75 0.68 15.15 16 18 O -0.57 -17.53 16.93 -3.92 -0.07 -17.60 16 19 C -0.03 -0.69 7.13 42.46 0.30 -0.39 16 20 C -0.20 -3.42 10.73 22.41 0.24 -3.18 16 21 C 0.07 0.74 6.64 41.40 0.28 1.02 16 22 C -0.11 -0.55 6.26 -11.54 -0.07 -0.62 16 23 C -0.17 -0.32 10.22 30.62 0.31 0.00 16 24 C -0.17 -0.31 10.23 30.62 0.31 0.00 16 25 N -0.36 -3.84 6.80 -47.93 -0.33 -4.17 16 26 H 0.46 1.62 8.96 -219.99 -1.97 -0.36 16 27 N -0.26 -4.37 11.92 -48.17 -0.57 -4.95 16 28 C 0.05 1.54 5.46 86.38 0.47 2.01 16 29 C 0.15 5.66 6.69 86.35 0.58 6.24 16 30 H 0.26 15.84 8.31 -92.71 -0.77 15.07 16 31 H 0.04 1.53 6.94 -2.39 -0.02 1.51 16 32 H 0.05 2.49 4.61 -2.39 -0.01 2.48 16 33 H 0.09 2.72 7.99 -2.39 -0.02 2.70 16 34 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.09 1.75 7.97 -2.39 -0.02 1.73 16 36 H 0.03 0.76 8.12 -2.39 -0.02 0.74 16 37 H 0.08 1.32 6.40 -2.39 -0.02 1.30 16 38 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 40 H 0.06 1.30 8.14 -2.39 -0.02 1.29 16 41 H 0.42 6.57 8.20 -92.71 -0.76 5.81 16 42 H 0.16 2.71 8.06 -2.91 -0.02 2.68 16 43 H 0.14 0.53 8.14 -2.39 -0.02 0.51 16 44 H 0.10 0.12 8.14 -2.38 -0.02 0.10 16 45 H 0.12 0.02 8.14 -2.39 -0.02 0.00 16 46 H 0.12 0.01 8.14 -2.39 -0.02 -0.01 16 47 H 0.10 0.12 8.14 -2.39 -0.02 0.10 16 48 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 49 H 0.10 2.51 6.16 -2.39 -0.01 2.49 16 50 H 0.04 1.43 8.14 -2.38 -0.02 1.41 16 51 H 0.06 2.34 7.95 -2.39 -0.02 2.32 16 Total: -1.00 -77.74 406.89 -3.24 -80.99 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: -1.88 Total: 10.14 kcal Atomic # 6 Polarization: 9.33 SS G_CDS: 6.33 Total: 15.66 kcal Atomic # 7 Polarization: -129.01 SS G_CDS: -9.30 Total: -138.30 kcal Atomic # 8 Polarization: -17.53 SS G_CDS: -0.07 Total: -17.60 kcal Atomic # 14 Polarization: 47.44 SS G_CDS: 1.67 Total: 49.11 kcal Total: -77.74 -3.24 -80.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713803203.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.921 kcal (2) G-P(sol) polarization free energy of solvation -77.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.987 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds