Wall clock time and date at job start Wed Apr 1 2020 05:06:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86805 * 119.99795 * 2 1 4 4 H 1.48506 * 109.46765 * 269.99977 * 3 2 1 5 5 H 1.48497 * 109.46870 * 30.00144 * 3 2 1 6 6 H 1.48502 * 109.47240 * 150.00329 * 3 2 1 7 7 C 1.38809 * 120.00178 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00093 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00371 * 359.97438 * 7 2 1 10 10 C 1.47747 * 126.22091 * 0.35979 * 9 7 2 11 11 C 1.55471 * 106.85377 * 186.00144 * 10 9 7 12 12 C 1.53435 * 101.66899 * 22.12155 * 11 10 9 13 13 H 1.09001 * 111.14633 * 77.98401 * 12 11 10 14 14 C 1.45018 * 126.56383 * 179.97438 * 9 7 2 15 15 H 1.09000 * 108.71298 * 263.48424 * 14 9 7 16 16 C 1.51085 * 119.18578 * 28.76941 * 14 9 7 17 17 C 1.53869 * 107.34299 * 183.25960 * 16 14 9 18 18 C 1.52712 * 111.47060 * 303.10556 * 17 16 14 19 19 N 1.45722 * 117.00638 * 207.01688 * 12 11 10 20 20 C 1.34779 * 122.22863 * 350.41516 * 19 12 11 21 21 O 1.21281 * 119.99884 * 359.97438 * 20 19 12 22 22 C 1.50703 * 120.00041 * 180.02562 * 20 19 12 23 23 C 1.52992 * 109.47037 * 179.97438 * 22 20 19 24 24 C 1.53004 * 109.47032 * 180.02562 * 23 22 20 25 25 C 1.52996 * 109.47101 * 180.02562 * 24 23 22 26 26 C 1.50703 * 109.47106 * 179.97438 * 25 24 23 27 27 C 1.35348 * 126.91274 * 274.68222 * 26 25 24 28 28 N 1.33767 * 106.49813 * 179.90372 * 27 26 25 29 29 N 1.28638 * 108.88504 * 0.37020 * 28 27 26 30 30 N 1.28711 * 110.17762 * 359.76567 * 29 28 27 31 31 H 0.97000 * 125.86931 * 180.02562 * 30 29 28 32 32 H 0.96996 * 120.00547 * 359.97438 * 1 2 3 33 33 H 1.09005 * 110.42347 * 66.43813 * 10 9 7 34 34 H 1.09004 * 109.65299 * 305.14037 * 10 9 7 35 35 H 1.08998 * 110.98872 * 264.02609 * 11 10 9 36 36 H 1.09003 * 111.02006 * 140.22749 * 11 10 9 37 37 H 1.08995 * 109.88465 * 63.79790 * 16 14 9 38 38 H 1.08998 * 109.88080 * 302.71641 * 16 14 9 39 39 H 1.09002 * 109.07043 * 63.60103 * 17 16 14 40 40 H 1.09001 * 109.06981 * 182.61564 * 17 16 14 41 41 H 1.09006 * 109.16191 * 168.89613 * 18 17 16 42 42 H 1.09000 * 109.16266 * 288.08620 * 18 17 16 43 43 H 1.09000 * 109.47071 * 299.99823 * 22 20 19 44 44 H 1.09005 * 109.46653 * 59.99474 * 22 20 19 45 45 H 1.09000 * 109.47291 * 299.99989 * 23 22 20 46 46 H 1.08997 * 109.47471 * 60.00013 * 23 22 20 47 47 H 1.09000 * 109.47027 * 300.00094 * 24 23 22 48 48 H 1.08993 * 109.46826 * 60.00142 * 24 23 22 49 49 H 1.09000 * 109.46975 * 299.99781 * 25 24 23 50 50 H 1.08997 * 109.47718 * 59.99763 * 25 24 23 51 51 H 1.08007 * 126.74814 * 0.03756 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4002 5 1 1.4475 2.6526 0.7001 6 1 3.5478 1.4403 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3257 -2.3881 -0.0005 10 6 -0.1431 -2.5483 -0.0075 11 6 -0.4315 -4.0678 0.1511 12 6 0.8694 -4.5650 0.7951 13 1 0.8970 -4.3286 1.8588 14 6 1.9026 -3.7186 -0.0016 15 1 1.9334 -4.0856 -1.0275 16 6 3.2570 -3.9348 0.6321 17 6 3.6389 -5.4082 0.4065 18 6 2.5818 -6.3529 0.9742 19 7 1.2359 -5.9553 0.5578 20 6 0.3945 -6.8307 -0.0272 21 8 -0.7099 -6.4702 -0.3752 22 6 0.8256 -8.2578 -0.2478 23 6 -0.3068 -9.0341 -0.9229 24 6 0.1307 -10.4831 -1.1463 25 6 -1.0015 -11.2592 -1.8220 26 6 -0.5704 -12.6863 -2.0426 27 6 0.1338 -13.1697 -3.0925 28 7 0.2909 -14.4799 -2.8736 29 7 -0.2851 -14.7890 -1.7657 30 7 -0.8147 -13.7434 -1.2339 31 1 -1.3043 -13.7174 -0.3970 32 1 -0.4851 0.8400 0.0004 33 1 -0.5607 -2.1864 -0.9470 34 1 -0.5758 -1.9983 0.8282 35 1 -0.5914 -4.5382 -0.8191 36 1 -1.2830 -4.2375 0.8100 37 1 3.2042 -3.7249 1.7003 38 1 3.9944 -3.2845 0.1616 39 1 3.7412 -5.5898 -0.6634 40 1 4.5932 -5.6074 0.8942 41 1 2.7836 -7.3661 0.6263 42 1 2.6316 -6.3328 2.0629 43 1 1.7095 -8.2759 -0.8854 44 1 1.0603 -8.7189 0.7117 45 1 -1.1904 -9.0159 -0.2849 46 1 -0.5418 -8.5731 -1.8822 47 1 1.0144 -10.5016 -1.7840 48 1 0.3653 -10.9438 -0.1868 49 1 -1.8855 -11.2407 -1.1846 50 1 -1.2359 -10.7984 -2.7815 51 1 0.4992 -12.6075 -3.9393 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733608024.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:06:20 Heat of formation + Delta-G solvation = 77.183865 kcal Electronic energy + Delta-G solvation = -30539.548537 eV Core-core repulsion = 26476.341451 eV Total energy + Delta-G solvation = -4063.207085 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.69089 -40.43770 -38.04613 -36.20988 -35.54424 -33.76183 -32.82708 -32.61742 -32.09353 -29.72908 -28.72476 -28.23257 -25.77149 -24.49928 -24.06773 -23.35629 -22.29628 -21.62521 -21.51936 -20.60316 -19.69355 -18.79512 -18.50021 -16.88345 -16.48817 -16.24037 -16.10683 -15.70960 -15.19878 -14.92136 -14.79133 -14.57341 -14.30247 -14.15913 -13.79064 -13.72785 -13.28565 -12.97950 -12.69798 -12.55991 -12.38591 -12.22669 -11.96384 -11.84798 -11.66860 -11.60548 -11.51301 -11.21800 -11.10870 -10.99039 -10.90393 -10.87094 -10.71802 -10.53803 -10.43865 -10.11153 -9.99832 -9.86066 -9.64355 -9.55801 -9.01072 -8.58807 -8.22792 -6.84058 -5.70628 -3.05562 1.13875 2.16106 2.32293 2.80813 3.16926 3.39174 3.43902 3.46002 3.95780 4.20838 4.42651 4.47798 4.49282 4.54635 4.73461 4.78605 4.93462 5.02608 5.04399 5.09724 5.12867 5.22952 5.31502 5.35755 5.39512 5.43170 5.46487 5.56186 5.59567 5.67963 5.73764 5.74904 5.86184 5.91093 5.98429 6.05691 6.08832 6.25214 6.26971 6.37515 6.40290 6.55349 6.70401 6.78391 6.87430 7.16915 7.57991 7.64638 7.72271 7.84432 8.04592 8.25550 8.42004 9.19519 9.82896 10.50171 11.40675 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.026948 B = 0.001811 C = 0.001757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.790036 B =15455.437519 C =15935.686157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.007 4.007 3 Si 0.910 3.090 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.227 4.227 8 H 0.078 0.922 9 N -0.592 5.592 10 C 0.172 3.828 11 C -0.127 4.127 12 C 0.116 3.884 13 H 0.078 0.922 14 C 0.159 3.841 15 H 0.017 0.983 16 C -0.116 4.116 17 C -0.130 4.130 18 C 0.110 3.890 19 N -0.599 5.599 20 C 0.511 3.489 21 O -0.533 6.533 22 C -0.140 4.140 23 C -0.104 4.104 24 C -0.115 4.115 25 C -0.050 4.050 26 C -0.003 4.003 27 C -0.049 4.049 28 N -0.266 5.266 29 N -0.086 5.086 30 N -0.391 5.391 31 H 0.447 0.553 32 H 0.252 0.748 33 H 0.037 0.963 34 H 0.057 0.943 35 H 0.080 0.920 36 H 0.059 0.941 37 H 0.063 0.937 38 H 0.066 0.934 39 H 0.063 0.937 40 H 0.072 0.928 41 H 0.079 0.921 42 H 0.063 0.937 43 H 0.091 0.909 44 H 0.088 0.912 45 H 0.071 0.929 46 H 0.075 0.925 47 H 0.071 0.929 48 H 0.062 0.938 49 H 0.080 0.920 50 H 0.099 0.901 51 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.444 -23.435 0.837 23.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.204 4.204 3 Si 0.741 3.259 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.356 4.356 8 H 0.096 0.904 9 N -0.317 5.317 10 C 0.048 3.952 11 C -0.166 4.166 12 C 0.011 3.989 13 H 0.096 0.904 14 C 0.050 3.950 15 H 0.034 0.966 16 C -0.154 4.154 17 C -0.169 4.169 18 C -0.014 4.014 19 N -0.332 5.332 20 C 0.299 3.701 21 O -0.411 6.411 22 C -0.180 4.180 23 C -0.142 4.142 24 C -0.153 4.153 25 C -0.090 4.090 26 C -0.137 4.137 27 C -0.206 4.206 28 N -0.133 5.133 29 N -0.067 5.067 30 N -0.112 5.112 31 H 0.293 0.707 32 H 0.063 0.937 33 H 0.056 0.944 34 H 0.076 0.924 35 H 0.099 0.901 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.082 0.918 40 H 0.090 0.910 41 H 0.097 0.903 42 H 0.081 0.919 43 H 0.109 0.891 44 H 0.106 0.894 45 H 0.090 0.910 46 H 0.094 0.906 47 H 0.090 0.910 48 H 0.081 0.919 49 H 0.099 0.901 50 H 0.117 0.883 51 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 1.108 -24.558 0.661 24.592 hybrid contribution 0.145 2.121 0.519 2.188 sum 1.254 -22.437 1.181 22.503 Atomic orbital electron populations 1.69951 1.04873 1.25048 1.56798 1.24810 0.95679 0.97645 1.02241 0.86149 0.78559 0.83656 0.77554 1.21643 1.21689 1.20729 1.18992 0.90352 0.82266 1.43955 0.90401 1.43940 1.01873 0.99386 1.86502 1.21649 0.83674 0.88849 1.01074 1.22930 0.94489 0.97934 1.01241 1.22392 0.98769 0.78448 0.99248 0.90447 1.20758 0.91478 0.87208 0.95595 0.96569 1.21420 0.98536 0.94155 1.01314 1.21911 0.97707 0.95811 1.01468 1.21445 0.82062 0.98365 0.99493 1.47708 1.14194 1.11128 1.60125 1.20577 0.84883 0.87254 0.77383 1.90700 1.21096 1.78874 1.50382 1.21709 1.00570 0.93121 1.02624 1.21332 0.97756 0.92968 1.02118 1.21630 0.97850 0.95134 1.00710 1.20234 0.99022 0.86108 1.03619 1.22426 1.04620 0.92877 0.93812 1.23467 1.04006 0.92011 1.01142 1.75109 1.16456 1.13731 1.08037 1.78305 1.11525 1.10850 1.05983 1.45154 1.39195 1.06108 1.20718 0.70745 0.93720 0.94431 0.92435 0.90133 0.92229 0.91779 0.91490 0.91850 0.90975 0.90292 0.91854 0.89108 0.89362 0.90977 0.90619 0.91017 0.91932 0.90099 0.88288 0.79194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.02 10.41 55.49 0.58 -26.44 16 2 C -0.01 -0.21 5.49 -17.43 -0.10 -0.30 16 3 Si 0.91 21.92 29.55 -169.99 -5.02 16.89 16 4 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.23 -6.20 9.94 -15.06 -0.15 -6.35 16 8 H 0.08 2.03 7.33 -52.48 -0.38 1.65 16 9 N -0.59 -14.97 3.32 -163.78 -0.54 -15.51 16 10 C 0.17 4.30 5.45 -2.05 -0.01 4.29 16 11 C -0.13 -2.65 5.05 -25.19 -0.13 -2.77 16 12 C 0.12 2.13 3.32 -66.78 -0.22 1.90 16 13 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 14 C 0.16 3.23 2.60 -68.35 -0.18 3.05 16 15 H 0.02 0.37 8.06 -51.93 -0.42 -0.05 16 16 C -0.12 -1.91 5.44 -27.24 -0.15 -2.06 16 17 C -0.13 -1.53 5.93 -26.43 -0.16 -1.68 16 18 C 0.11 1.17 6.25 -4.25 -0.03 1.14 16 19 N -0.60 -8.61 2.88 -165.16 -0.48 -9.08 16 20 C 0.51 7.08 7.69 -10.98 -0.08 7.00 16 21 O -0.53 -9.34 12.88 5.56 0.07 -9.27 16 22 C -0.14 -1.19 4.08 -27.89 -0.11 -1.30 16 23 C -0.10 -0.77 4.50 -26.73 -0.12 -0.89 16 24 C -0.11 -0.56 5.20 -26.73 -0.14 -0.70 16 25 C -0.05 -0.21 5.78 -27.88 -0.16 -0.37 16 26 C 0.00 -0.02 6.56 -82.08 -0.54 -0.56 16 27 C -0.05 -0.38 11.99 -17.74 -0.21 -0.59 16 28 N -0.27 -2.87 12.41 30.24 0.38 -2.50 16 29 N -0.09 -0.85 13.38 60.35 0.81 -0.04 16 30 N -0.39 -2.41 6.98 33.54 0.23 -2.17 16 31 H 0.45 1.14 8.96 -190.40 -1.71 -0.57 16 32 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 33 H 0.04 1.03 7.82 -51.93 -0.41 0.63 16 34 H 0.06 1.57 7.11 -51.93 -0.37 1.20 16 35 H 0.08 1.74 6.26 -51.93 -0.33 1.42 16 36 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.06 1.07 8.12 -51.93 -0.42 0.65 16 38 H 0.07 1.16 7.73 -51.93 -0.40 0.76 16 39 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.08 0.59 6.02 -51.93 -0.31 0.28 16 42 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.09 0.65 7.68 -51.93 -0.40 0.25 16 44 H 0.09 0.59 8.01 -51.93 -0.42 0.17 16 45 H 0.07 0.60 8.10 -51.93 -0.42 0.18 16 46 H 0.08 0.66 8.10 -51.93 -0.42 0.24 16 47 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 48 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 49 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 50 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 51 H 0.19 0.97 8.06 -52.48 -0.42 0.55 16 LS Contribution 397.35 15.07 5.99 5.99 Total: -1.00 -35.10 397.35 -10.24 -45.34 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -9.76 Total: -3.01 kcal Atomic # 6 Polarization: 2.29 SS G_CDS: -2.49 Total: -0.20 kcal Atomic # 7 Polarization: -56.72 SS G_CDS: 0.97 Total: -55.74 kcal Atomic # 8 Polarization: -9.34 SS G_CDS: 0.07 Total: -9.27 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -35.10 -10.24 -45.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733608024.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.522 kcal (2) G-P(sol) polarization free energy of solvation -35.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds