Wall clock time and date at job start Wed Apr 1 2020 05:06:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86805 * 119.99795 * 2 1 4 4 H 1.48506 * 109.46765 * 269.99977 * 3 2 1 5 5 H 1.48497 * 109.46870 * 30.00144 * 3 2 1 6 6 H 1.48502 * 109.47240 * 150.00329 * 3 2 1 7 7 C 1.38809 * 120.00178 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00093 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00371 * 359.97438 * 7 2 1 10 10 C 1.47747 * 126.22091 * 0.35979 * 9 7 2 11 11 C 1.55471 * 106.85377 * 186.00144 * 10 9 7 12 12 C 1.53435 * 101.66899 * 22.12155 * 11 10 9 13 13 H 1.09001 * 111.14633 * 77.98401 * 12 11 10 14 14 C 1.45018 * 126.56383 * 179.97438 * 9 7 2 15 15 H 1.09000 * 108.71298 * 263.48424 * 14 9 7 16 16 C 1.51085 * 119.18578 * 28.76941 * 14 9 7 17 17 C 1.53869 * 107.34299 * 183.25960 * 16 14 9 18 18 C 1.52712 * 111.47060 * 303.10556 * 17 16 14 19 19 N 1.45722 * 117.00638 * 207.01688 * 12 11 10 20 20 C 1.34779 * 122.22863 * 350.41516 * 19 12 11 21 21 O 1.21281 * 119.99884 * 359.97438 * 20 19 12 22 22 C 1.50703 * 120.00041 * 180.02562 * 20 19 12 23 23 C 1.52992 * 109.47037 * 179.97438 * 22 20 19 24 24 C 1.53004 * 109.47032 * 180.02562 * 23 22 20 25 25 C 1.52996 * 109.47101 * 180.02562 * 24 23 22 26 26 C 1.50703 * 109.47106 * 179.97438 * 25 24 23 27 27 C 1.35348 * 126.91274 * 274.68222 * 26 25 24 28 28 N 1.33767 * 106.49813 * 179.90372 * 27 26 25 29 29 N 1.28638 * 108.88504 * 0.37020 * 28 27 26 30 30 N 1.28711 * 110.17762 * 359.76567 * 29 28 27 31 31 H 0.97000 * 125.86931 * 180.02562 * 30 29 28 32 32 H 0.96996 * 120.00547 * 359.97438 * 1 2 3 33 33 H 1.09005 * 110.42347 * 66.43813 * 10 9 7 34 34 H 1.09004 * 109.65299 * 305.14037 * 10 9 7 35 35 H 1.08998 * 110.98872 * 264.02609 * 11 10 9 36 36 H 1.09003 * 111.02006 * 140.22749 * 11 10 9 37 37 H 1.08995 * 109.88465 * 63.79790 * 16 14 9 38 38 H 1.08998 * 109.88080 * 302.71641 * 16 14 9 39 39 H 1.09002 * 109.07043 * 63.60103 * 17 16 14 40 40 H 1.09001 * 109.06981 * 182.61564 * 17 16 14 41 41 H 1.09006 * 109.16191 * 168.89613 * 18 17 16 42 42 H 1.09000 * 109.16266 * 288.08620 * 18 17 16 43 43 H 1.09000 * 109.47071 * 299.99823 * 22 20 19 44 44 H 1.09005 * 109.46653 * 59.99474 * 22 20 19 45 45 H 1.09000 * 109.47291 * 299.99989 * 23 22 20 46 46 H 1.08997 * 109.47471 * 60.00013 * 23 22 20 47 47 H 1.09000 * 109.47027 * 300.00094 * 24 23 22 48 48 H 1.08993 * 109.46826 * 60.00142 * 24 23 22 49 49 H 1.09000 * 109.46975 * 299.99781 * 25 24 23 50 50 H 1.08997 * 109.47718 * 59.99763 * 25 24 23 51 51 H 1.08007 * 126.74814 * 0.03756 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4002 5 1 1.4475 2.6526 0.7001 6 1 3.5478 1.4403 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3257 -2.3881 -0.0005 10 6 -0.1431 -2.5483 -0.0075 11 6 -0.4315 -4.0678 0.1511 12 6 0.8694 -4.5650 0.7951 13 1 0.8970 -4.3286 1.8588 14 6 1.9026 -3.7186 -0.0016 15 1 1.9334 -4.0856 -1.0275 16 6 3.2570 -3.9348 0.6321 17 6 3.6389 -5.4082 0.4065 18 6 2.5818 -6.3529 0.9742 19 7 1.2359 -5.9553 0.5578 20 6 0.3945 -6.8307 -0.0272 21 8 -0.7099 -6.4702 -0.3752 22 6 0.8256 -8.2578 -0.2478 23 6 -0.3068 -9.0341 -0.9229 24 6 0.1307 -10.4831 -1.1463 25 6 -1.0015 -11.2592 -1.8220 26 6 -0.5704 -12.6863 -2.0426 27 6 0.1338 -13.1697 -3.0925 28 7 0.2909 -14.4799 -2.8736 29 7 -0.2851 -14.7890 -1.7657 30 7 -0.8147 -13.7434 -1.2339 31 1 -1.3043 -13.7174 -0.3970 32 1 -0.4851 0.8400 0.0004 33 1 -0.5607 -2.1864 -0.9470 34 1 -0.5758 -1.9983 0.8282 35 1 -0.5914 -4.5382 -0.8191 36 1 -1.2830 -4.2375 0.8100 37 1 3.2042 -3.7249 1.7003 38 1 3.9944 -3.2845 0.1616 39 1 3.7412 -5.5898 -0.6634 40 1 4.5932 -5.6074 0.8942 41 1 2.7836 -7.3661 0.6263 42 1 2.6316 -6.3328 2.0629 43 1 1.7095 -8.2759 -0.8854 44 1 1.0603 -8.7189 0.7117 45 1 -1.1904 -9.0159 -0.2849 46 1 -0.5418 -8.5731 -1.8822 47 1 1.0144 -10.5016 -1.7840 48 1 0.3653 -10.9438 -0.1868 49 1 -1.8855 -11.2407 -1.1846 50 1 -1.2359 -10.7984 -2.7815 51 1 0.4992 -12.6075 -3.9393 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733608024.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:06:19 Heat of formation + Delta-G solvation = 53.552898 kcal Electronic energy + Delta-G solvation = -30540.573252 eV Core-core repulsion = 26476.341451 eV Total energy + Delta-G solvation = -4064.231801 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -44.24109 -41.68838 -39.37504 -36.98905 -36.75812 -34.43940 -34.22327 -33.83431 -33.21325 -31.04529 -29.95959 -29.55079 -26.75038 -26.25694 -25.15689 -23.94770 -23.04860 -22.83299 -22.32693 -21.75917 -21.36934 -19.84621 -19.08770 -18.59683 -17.33242 -17.18803 -16.98070 -16.91217 -16.67210 -16.04894 -15.76845 -15.50791 -15.35910 -15.27775 -15.07977 -14.88931 -14.34973 -14.21387 -13.93779 -13.57812 -13.46172 -13.36125 -13.14779 -13.02984 -12.84223 -12.73397 -12.50000 -12.24135 -12.18583 -12.09968 -12.06356 -11.87991 -11.77414 -11.73634 -11.69741 -11.56304 -11.53804 -11.39061 -11.36303 -10.76172 -10.28073 -10.06417 -9.47406 -8.91217 -7.84319 -5.21834 0.62412 1.44990 1.47338 1.55881 1.57502 1.77372 1.93012 2.09513 2.50182 3.33524 3.35630 3.52653 3.68205 3.79632 3.93998 3.98054 4.04677 4.06802 4.11237 4.13431 4.23292 4.28116 4.36720 4.43351 4.55267 4.58243 4.62157 4.62857 4.70838 4.71685 4.77920 4.90474 4.94181 4.95296 5.04005 5.05854 5.12927 5.17625 5.19024 5.26315 5.30074 5.43219 5.46509 5.48659 5.56234 5.60095 5.66985 5.75162 6.03838 6.18798 6.65013 7.05960 7.34752 7.46945 7.76168 8.44907 9.26677 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.026948 B = 0.001811 C = 0.001757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.790036 B =15455.437519 C =15935.686157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.071 4.071 3 Si 0.979 3.021 4 H -0.289 1.289 5 H -0.296 1.296 6 H -0.264 1.264 7 C -0.233 4.233 8 H 0.088 0.912 9 N -0.612 5.612 10 C 0.182 3.818 11 C -0.109 4.109 12 C 0.132 3.868 13 H 0.074 0.926 14 C 0.152 3.848 15 H -0.001 1.001 16 C -0.113 4.113 17 C -0.121 4.121 18 C 0.104 3.896 19 N -0.602 5.602 20 C 0.501 3.499 21 O -0.579 6.579 22 C -0.130 4.130 23 C -0.100 4.100 24 C -0.104 4.104 25 C -0.046 4.046 26 C 0.013 3.987 27 C -0.063 4.063 28 N -0.306 5.306 29 N -0.119 5.119 30 N -0.377 5.377 31 H 0.462 0.538 32 H 0.246 0.754 33 H -0.003 1.003 34 H 0.025 0.975 35 H 0.071 0.929 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.053 0.947 39 H 0.064 0.936 40 H 0.108 0.892 41 H 0.124 0.876 42 H 0.079 0.921 43 H 0.115 0.885 44 H 0.120 0.880 45 H 0.060 0.940 46 H 0.057 0.943 47 H 0.078 0.922 48 H 0.074 0.926 49 H 0.093 0.907 50 H 0.105 0.895 51 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.870 -25.709 1.825 26.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.263 4.263 3 Si 0.807 3.193 4 H -0.216 1.216 5 H -0.223 1.223 6 H -0.188 1.188 7 C -0.362 4.362 8 H 0.106 0.894 9 N -0.337 5.337 10 C 0.056 3.944 11 C -0.147 4.147 12 C 0.026 3.974 13 H 0.092 0.908 14 C 0.044 3.956 15 H 0.017 0.983 16 C -0.151 4.151 17 C -0.160 4.160 18 C -0.018 4.018 19 N -0.334 5.334 20 C 0.292 3.708 21 O -0.459 6.459 22 C -0.169 4.169 23 C -0.138 4.138 24 C -0.142 4.142 25 C -0.086 4.086 26 C -0.122 4.122 27 C -0.221 4.221 28 N -0.172 5.172 29 N -0.098 5.098 30 N -0.100 5.100 31 H 0.310 0.690 32 H 0.055 0.945 33 H 0.015 0.985 34 H 0.044 0.956 35 H 0.089 0.911 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.072 0.928 39 H 0.083 0.917 40 H 0.127 0.873 41 H 0.142 0.858 42 H 0.098 0.902 43 H 0.133 0.867 44 H 0.138 0.862 45 H 0.079 0.921 46 H 0.076 0.924 47 H 0.096 0.904 48 H 0.092 0.908 49 H 0.112 0.888 50 H 0.123 0.877 51 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 3.585 -26.908 1.676 27.198 hybrid contribution -0.655 2.853 0.180 2.933 sum 2.930 -24.055 1.856 24.303 Atomic orbital electron populations 1.70188 1.06497 1.25241 1.58454 1.25710 0.96560 1.01225 1.02822 0.85067 0.77794 0.79061 0.77354 1.21584 1.22268 1.18824 1.19418 0.91033 0.83240 1.42518 0.89388 1.44218 1.02097 1.01042 1.86331 1.21348 0.84030 0.91429 0.97588 1.22635 0.96251 0.94695 1.01165 1.21911 0.95955 0.81345 0.98191 0.90838 1.20960 0.94450 0.84862 0.95307 0.98324 1.21417 0.95443 0.97873 1.00410 1.21899 0.99741 0.92106 1.02229 1.21806 0.79221 1.00119 1.00621 1.47835 1.16126 1.09083 1.60378 1.21664 0.84103 0.89158 0.75884 1.90682 1.23229 1.80006 1.52019 1.21778 1.01456 0.88846 1.04823 1.21270 0.97265 0.94391 1.00885 1.21517 0.98012 0.93181 1.01507 1.20282 0.99355 0.84637 1.04313 1.22634 1.03283 0.93359 0.92945 1.23941 1.04399 0.91349 1.02373 1.75063 1.17772 1.15511 1.08874 1.78239 1.12955 1.12168 1.06470 1.45189 1.38255 1.05497 1.21045 0.68982 0.94490 0.98498 0.95634 0.91051 0.92032 0.92020 0.92786 0.91742 0.87329 0.85763 0.90241 0.86684 0.86234 0.92086 0.92385 0.90353 0.90757 0.88818 0.87704 0.77300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.00 10.41 21.65 0.23 -58.77 16 2 C -0.07 -4.07 5.49 84.86 0.47 -3.61 16 3 Si 0.98 46.01 29.55 68.60 2.03 48.04 16 4 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 5 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 6 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 7 C -0.23 -13.04 9.94 84.03 0.84 -12.21 16 8 H 0.09 4.62 7.33 -2.91 -0.02 4.60 16 9 N -0.61 -32.12 3.32 -672.07 -2.23 -34.35 16 10 C 0.18 9.69 5.45 86.99 0.47 10.16 16 11 C -0.11 -4.72 5.05 31.59 0.16 -4.56 16 12 C 0.13 4.81 3.32 46.15 0.15 4.96 16 13 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 14 C 0.15 6.21 2.60 45.51 0.12 6.33 16 15 H 0.00 -0.03 8.06 -2.39 -0.02 -0.05 16 16 C -0.11 -3.54 5.44 30.26 0.16 -3.37 16 17 C -0.12 -2.33 5.93 30.79 0.18 -2.15 16 18 C 0.10 1.69 6.25 86.31 0.54 2.23 16 19 N -0.60 -15.76 2.88 -794.82 -2.29 -18.06 16 20 C 0.50 12.70 7.69 87.66 0.67 13.37 16 21 O -0.58 -20.06 12.88 -3.03 -0.04 -20.10 16 22 C -0.13 -1.61 4.08 29.85 0.12 -1.49 16 23 C -0.10 -1.18 4.50 30.59 0.14 -1.04 16 24 C -0.10 -0.58 5.20 30.59 0.16 -0.42 16 25 C -0.05 -0.24 5.78 29.85 0.17 -0.07 16 26 C 0.01 0.12 6.56 41.36 0.27 0.39 16 27 C -0.06 -0.86 11.99 83.73 1.00 0.14 16 28 N -0.31 -6.38 12.41 -58.26 -0.72 -7.11 16 29 N -0.12 -2.23 13.38 37.02 0.50 -1.73 16 30 N -0.38 -3.89 6.98 -47.79 -0.33 -4.23 16 31 H 0.46 1.31 8.96 -219.96 -1.97 -0.67 16 32 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 33 H 0.00 -0.19 7.82 -2.38 -0.02 -0.21 16 34 H 0.03 1.50 7.11 -2.38 -0.02 1.48 16 35 H 0.07 3.24 6.26 -2.39 -0.01 3.22 16 36 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 37 H 0.06 1.95 8.12 -2.39 -0.02 1.93 16 38 H 0.05 1.81 7.73 -2.39 -0.02 1.79 16 39 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.12 0.99 6.02 -2.38 -0.01 0.98 16 42 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 43 H 0.12 0.97 7.68 -2.39 -0.02 0.95 16 44 H 0.12 0.84 8.01 -2.38 -0.02 0.82 16 45 H 0.06 0.87 8.10 -2.39 -0.02 0.85 16 46 H 0.06 0.90 8.10 -2.39 -0.02 0.88 16 47 H 0.08 0.40 8.14 -2.39 -0.02 0.38 16 48 H 0.07 0.30 8.14 -2.39 -0.02 0.28 16 49 H 0.09 0.29 8.14 -2.39 -0.02 0.27 16 50 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 51 H 0.21 1.72 8.06 -2.91 -0.02 1.69 16 Total: -1.00 -83.52 397.35 1.72 -81.79 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: -1.04 Total: 5.84 kcal Atomic # 6 Polarization: 3.04 SS G_CDS: 5.63 Total: 8.67 kcal Atomic # 7 Polarization: -119.38 SS G_CDS: -4.86 Total: -124.24 kcal Atomic # 8 Polarization: -20.06 SS G_CDS: -0.04 Total: -20.10 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 2.03 Total: 48.04 kcal Total: -83.52 1.72 -81.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733608024.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.345 kcal (2) G-P(sol) polarization free energy of solvation -83.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.792 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds