Wall clock time and date at job start Wed Apr 1 2020 04:38:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38123 * 120.40365 * 2 1 4 4 C 1.39618 * 118.33323 * 180.19965 * 3 2 1 5 5 N 1.38543 * 120.53188 * 179.80093 * 4 3 2 6 6 C 1.46948 * 110.99971 * 303.52280 * 5 4 3 7 7 C 1.53052 * 109.36792 * 176.80945 * 6 5 4 8 8 N 1.46963 * 109.36429 * 58.39692 * 7 6 5 9 9 C 1.46897 * 110.99945 * 176.81587 * 8 7 6 10 10 C 1.50704 * 109.47047 * 190.16887 * 9 8 7 11 11 O 1.21293 * 119.99559 * 6.27861 * 10 9 8 12 12 N 1.34770 * 120.00297 * 186.27493 * 10 9 8 13 13 C 1.37090 * 120.00206 * 179.97438 * 12 10 9 14 14 H 1.07996 * 120.00337 * 0.02562 * 13 12 10 15 15 C 1.38951 * 120.00061 * 180.02562 * 13 12 10 16 16 N 1.31418 * 120.00172 * 180.02562 * 15 13 12 17 17 Si 1.86799 * 120.00181 * 359.97438 * 15 13 12 18 18 H 1.48503 * 109.47158 * 89.99825 * 17 15 13 19 19 H 1.48498 * 109.47527 * 209.99933 * 17 15 13 20 20 H 1.48508 * 109.47111 * 330.00161 * 17 15 13 21 21 C 1.46956 * 110.87755 * 300.68482 * 8 7 6 22 22 C 1.46953 * 111.00328 * 179.71804 * 5 4 3 23 23 N 1.32995 * 118.93790 * 359.52238 * 4 3 2 24 24 C 1.31743 * 120.68964 * 0.25990 * 23 4 3 25 25 C 1.50700 * 119.08826 * 179.97438 * 24 23 4 26 26 C 1.53002 * 109.47368 * 119.99586 * 25 24 23 27 27 C 1.52995 * 109.47011 * 240.00052 * 25 24 23 28 28 N 1.31795 * 121.82959 * 359.97162 * 24 23 4 29 29 H 1.09006 * 109.46837 * 270.27815 * 1 2 3 30 30 H 1.08994 * 109.47174 * 30.27738 * 1 2 3 31 31 H 1.09001 * 109.47341 * 150.28147 * 1 2 3 32 32 H 1.08002 * 120.82878 * 359.97438 * 3 2 1 33 33 H 1.08999 * 109.48774 * 296.77427 * 6 5 4 34 34 H 1.08997 * 109.49360 * 56.84077 * 6 5 4 35 35 H 1.09001 * 109.48364 * 298.43475 * 7 6 5 36 36 H 1.08993 * 109.49251 * 178.36294 * 7 6 5 37 37 H 1.08996 * 109.47169 * 310.16708 * 9 8 7 38 38 H 1.08998 * 109.47381 * 70.17085 * 9 8 7 39 39 H 0.97007 * 119.99793 * 0.02562 * 12 10 9 40 40 H 0.97004 * 119.99625 * 179.97438 * 16 15 13 41 41 H 1.09007 * 109.48915 * 299.34807 * 21 8 7 42 42 H 1.09007 * 109.48883 * 179.29117 * 21 8 7 43 43 H 1.09005 * 109.49090 * 303.15777 * 22 5 4 44 44 H 1.09001 * 109.48939 * 63.19703 * 22 5 4 45 45 H 1.08998 * 109.46688 * 359.97438 * 25 24 23 46 46 H 1.08993 * 109.46892 * 180.02562 * 26 25 24 47 47 H 1.09004 * 109.46747 * 300.00240 * 26 25 24 48 48 H 1.08997 * 109.46775 * 60.00178 * 26 25 24 49 49 H 1.08990 * 109.47477 * 59.99583 * 27 25 24 50 50 H 1.09004 * 109.47197 * 179.97438 * 27 25 24 51 51 H 1.09007 * 109.46773 * 299.99408 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2060 1.1913 0.0000 4 6 3.6013 1.1409 -0.0043 5 7 4.3477 2.3080 -0.0086 6 6 3.9896 3.1579 -1.1526 7 6 4.7765 4.4685 -1.0773 8 7 6.2161 4.1730 -1.0746 9 6 7.0075 5.4106 -1.0791 10 6 8.4566 5.0792 -1.3271 11 8 8.7810 3.9422 -1.5973 12 7 9.3920 6.0463 -1.2486 13 6 10.7103 5.7448 -1.4737 14 1 10.9992 4.7324 -1.7142 15 6 11.6747 6.7418 -1.3923 16 7 12.9384 6.4528 -1.6085 17 14 11.1750 8.4931 -0.9769 18 1 11.2116 8.6823 0.4955 19 1 12.1170 9.4429 -1.6216 20 1 9.7988 8.7464 -1.4744 21 6 6.5741 3.3231 0.0696 22 6 5.7873 2.0125 -0.0059 23 7 4.2023 -0.0455 0.0015 24 6 3.4956 -1.1573 0.0060 25 6 4.2140 -2.4821 0.0119 26 6 3.8227 -3.2689 1.2645 27 6 3.8235 -3.2795 -1.2340 28 7 2.1777 -1.1433 0.0055 29 1 -0.3633 0.0050 1.0277 30 1 -0.3633 0.8874 -0.5181 31 1 -0.3634 -0.8925 -0.5095 32 1 1.6862 2.1380 -0.0004 33 1 4.2333 2.6403 -2.0805 34 1 2.9214 3.3731 -1.1256 35 1 4.5124 4.9990 -0.1625 36 1 4.5342 5.0883 -1.9405 37 1 6.6456 6.0703 -1.8676 38 1 6.9086 5.9087 -0.1146 39 1 9.1325 6.9556 -1.0322 40 1 13.6115 7.1490 -1.5520 41 1 6.3305 3.8407 0.9974 42 1 7.6424 3.1079 0.0426 43 1 6.0297 1.3926 0.8574 44 1 6.0513 1.4815 -0.9204 45 1 5.2905 -2.3115 0.0111 46 1 4.3427 -4.2268 1.2689 47 1 4.1010 -2.7006 2.1521 48 1 2.7462 -3.4394 1.2648 49 1 4.1022 -2.7190 -2.1262 50 1 4.3435 -4.2375 -1.2300 51 1 2.7469 -3.4500 -1.2336 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076668259.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:21 Heat of formation + Delta-G solvation = 6.884616 kcal Electronic energy + Delta-G solvation = -30579.887350 eV Core-core repulsion = 26513.631861 eV Total energy + Delta-G solvation = -4066.255490 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.43294 -40.82499 -39.75648 -37.24887 -36.48993 -35.89553 -34.46828 -33.74718 -32.38380 -31.99559 -30.19256 -29.06990 -28.08791 -27.20519 -25.83725 -25.07352 -24.39346 -22.94227 -21.55793 -21.27923 -20.92588 -20.22317 -18.74870 -18.16609 -17.70480 -16.87317 -16.65075 -16.48927 -16.36741 -16.26967 -15.96515 -15.76098 -15.43931 -15.23106 -15.14331 -15.00351 -14.80699 -14.35202 -14.24189 -14.14069 -13.91915 -13.52606 -13.30471 -13.16697 -13.05628 -13.01315 -12.78139 -12.71909 -12.42193 -12.37951 -12.23856 -12.18619 -12.07779 -11.97547 -11.89884 -11.76575 -11.49056 -11.42610 -10.66839 -10.39884 -10.27088 -10.22855 -9.56644 -9.26871 -8.40767 -6.01572 -0.06939 0.09648 1.30099 1.35842 1.44782 1.96742 2.22596 2.23430 2.56735 2.71937 2.88138 3.11346 3.15431 3.16583 3.64035 3.80647 3.91880 3.97837 4.03757 4.09526 4.14247 4.16490 4.20950 4.24865 4.32524 4.36707 4.40873 4.50343 4.54857 4.63455 4.71317 4.76896 4.78380 4.80331 4.81612 4.85264 4.87674 4.90919 4.97052 5.02881 5.11037 5.27929 5.29057 5.33498 5.49005 5.53243 5.80276 5.92882 5.98210 6.11303 6.19296 6.60561 6.89415 7.18079 7.40801 7.98753 8.76973 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.019145 B = 0.002108 C = 0.001948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.156270 B =13281.090032 C =14371.758053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.181 3.819 3 C -0.246 4.246 4 C 0.342 3.658 5 N -0.472 5.472 6 C 0.066 3.934 7 C 0.058 3.942 8 N -0.543 5.543 9 C 0.057 3.943 10 C 0.449 3.551 11 O -0.607 6.607 12 N -0.592 5.592 13 C -0.326 4.326 14 H 0.053 0.947 15 C -0.018 4.018 16 N -0.936 5.936 17 Si 0.966 3.034 18 H -0.258 1.258 19 H -0.276 1.276 20 H -0.229 1.229 21 C 0.063 3.937 22 C 0.090 3.910 23 N -0.587 5.587 24 C 0.340 3.660 25 C -0.032 4.032 26 C -0.129 4.129 27 C -0.130 4.130 28 N -0.546 5.546 29 H 0.097 0.903 30 H 0.103 0.897 31 H 0.082 0.918 32 H 0.175 0.825 33 H 0.039 0.961 34 H 0.125 0.875 35 H 0.062 0.938 36 H 0.113 0.887 37 H 0.128 0.872 38 H 0.081 0.919 39 H 0.390 0.610 40 H 0.279 0.721 41 H 0.047 0.953 42 H 0.064 0.936 43 H 0.078 0.922 44 H 0.034 0.966 45 H 0.084 0.916 46 H 0.084 0.916 47 H 0.041 0.959 48 H 0.065 0.935 49 H 0.039 0.961 50 H 0.084 0.916 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.883 -7.471 5.248 32.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.037 3.963 3 C -0.271 4.271 4 C 0.103 3.897 5 N -0.189 5.189 6 C -0.059 4.059 7 C -0.069 4.069 8 N -0.268 5.268 9 C -0.073 4.073 10 C 0.237 3.763 11 O -0.491 6.491 12 N -0.234 5.234 13 C -0.455 4.455 14 H 0.071 0.929 15 C -0.216 4.216 16 N -0.577 5.577 17 Si 0.786 3.214 18 H -0.183 1.183 19 H -0.201 1.201 20 H -0.152 1.152 21 C -0.066 4.066 22 C -0.038 4.038 23 N -0.308 5.308 24 C 0.071 3.929 25 C -0.053 4.053 26 C -0.187 4.187 27 C -0.188 4.188 28 N -0.264 5.264 29 H 0.115 0.885 30 H 0.122 0.878 31 H 0.101 0.899 32 H 0.192 0.808 33 H 0.057 0.943 34 H 0.143 0.857 35 H 0.080 0.920 36 H 0.131 0.869 37 H 0.145 0.855 38 H 0.099 0.901 39 H 0.225 0.775 40 H 0.088 0.912 41 H 0.065 0.935 42 H 0.082 0.918 43 H 0.097 0.903 44 H 0.053 0.947 45 H 0.102 0.898 46 H 0.103 0.897 47 H 0.061 0.939 48 H 0.085 0.915 49 H 0.058 0.942 50 H 0.103 0.897 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -29.970 -8.923 5.033 31.673 hybrid contribution 0.816 1.607 0.274 1.823 sum -29.155 -7.316 5.307 30.523 Atomic orbital electron populations 1.20858 0.84842 1.05151 1.04696 1.22225 0.99216 0.87201 0.87687 1.22397 0.92545 1.02200 1.09938 1.20442 0.91593 0.88388 0.89273 1.59205 1.06165 1.12342 1.41189 1.22480 1.02050 0.92642 0.88752 1.22343 0.84953 0.96022 1.03586 1.61668 1.05353 1.16211 1.43584 1.21818 0.89140 0.92370 1.04011 1.20948 0.88564 0.85120 0.81648 1.90546 1.82969 1.22806 1.52791 1.42039 1.06117 1.10433 1.64837 1.18971 0.82618 0.96905 1.47007 0.92865 1.26146 0.94448 1.04401 0.96618 1.69817 1.01882 1.36307 1.49668 0.85353 0.80257 0.76229 0.79598 1.18254 1.20111 1.15172 1.22127 0.99701 0.93272 0.91482 1.21756 0.84454 0.96150 1.01417 1.68244 1.42837 0.99017 1.20732 1.23298 0.87061 0.93865 0.88641 1.20080 0.98797 0.87783 0.98634 1.21703 1.02598 0.99919 0.94488 1.21707 1.02633 0.99868 0.94608 1.68096 1.08981 1.30928 1.18352 0.88484 0.87833 0.89883 0.80802 0.94261 0.85710 0.91971 0.86874 0.85455 0.90130 0.77480 0.91205 0.93450 0.91772 0.90329 0.94710 0.89811 0.89717 0.93946 0.91549 0.94222 0.89722 0.91476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.89 10.21 71.24 0.73 -0.16 16 2 C 0.18 3.27 6.82 42.42 0.29 3.56 16 3 C -0.25 -4.55 8.98 22.58 0.20 -4.35 16 4 C 0.34 8.64 6.40 133.16 0.85 9.49 16 5 N -0.47 -11.68 4.73 -700.85 -3.32 -15.00 16 6 C 0.07 1.30 5.38 86.31 0.46 1.76 16 7 C 0.06 1.14 5.61 86.31 0.48 1.62 16 8 N -0.54 -16.29 4.40 -900.27 -3.96 -20.26 16 9 C 0.06 1.72 5.45 85.56 0.47 2.18 16 10 C 0.45 20.27 7.34 87.66 0.64 20.92 16 11 O -0.61 -33.98 14.26 -3.07 -0.04 -34.03 16 12 N -0.59 -27.85 5.09 -307.00 -1.56 -29.42 16 13 C -0.33 -19.18 10.16 84.04 0.85 -18.33 16 14 H 0.05 3.75 7.39 -2.91 -0.02 3.73 16 15 C -0.02 -0.99 5.50 84.93 0.47 -0.53 16 16 N -0.94 -56.90 13.96 21.66 0.30 -56.60 16 17 Si 0.97 38.70 27.73 68.60 1.90 40.60 16 18 H -0.26 -9.81 7.11 99.48 0.71 -9.11 16 19 H -0.28 -11.02 7.11 99.48 0.71 -10.31 16 20 H -0.23 -7.59 6.52 99.48 0.65 -6.94 16 21 C 0.06 2.04 5.27 86.31 0.45 2.50 16 22 C 0.09 2.78 4.80 86.31 0.41 3.20 16 23 N -0.59 -16.96 8.74 -185.44 -1.62 -18.58 16 24 C 0.34 8.65 6.34 138.77 0.88 9.53 16 25 C -0.03 -0.68 3.25 -11.54 -0.04 -0.72 16 26 C -0.13 -2.18 9.09 71.98 0.65 -1.52 16 27 C -0.13 -2.28 9.09 71.98 0.65 -1.62 16 28 N -0.55 -12.35 9.74 -176.28 -1.72 -14.06 16 29 H 0.10 0.67 8.14 -2.38 -0.02 0.65 16 30 H 0.10 0.45 8.09 -2.39 -0.02 0.43 16 31 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.17 2.01 7.27 -2.91 -0.02 1.99 16 33 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.12 1.52 6.88 -2.39 -0.02 1.50 16 35 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.11 1.67 8.07 -2.39 -0.02 1.65 16 37 H 0.13 2.98 8.02 -2.39 -0.02 2.97 16 38 H 0.08 1.97 8.12 -2.39 -0.02 1.96 16 39 H 0.39 15.02 5.76 -92.70 -0.53 14.48 16 40 H 0.28 15.47 8.31 -92.71 -0.77 14.70 16 41 H 0.05 1.39 8.14 -2.38 -0.02 1.37 16 42 H 0.06 2.67 6.09 -2.38 -0.01 2.65 16 43 H 0.08 2.52 7.84 -2.38 -0.02 2.50 16 44 H 0.03 1.27 8.06 -2.39 -0.02 1.25 16 45 H 0.08 1.91 8.09 -2.39 -0.02 1.89 16 46 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 47 H 0.04 0.79 8.14 -2.38 -0.02 0.77 16 48 H 0.07 1.12 8.01 -2.39 -0.02 1.10 16 49 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 50 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 51 H 0.07 1.16 8.01 -2.38 -0.02 1.14 16 Total: -1.00 -82.64 406.38 -1.21 -83.85 By element: Atomic # 1 Polarization: 35.63 SS G_CDS: 0.34 Total: 35.97 kcal Atomic # 6 Polarization: 19.06 SS G_CDS: 8.47 Total: 27.53 kcal Atomic # 7 Polarization: -142.04 SS G_CDS: -11.88 Total: -153.92 kcal Atomic # 8 Polarization: -33.98 SS G_CDS: -0.04 Total: -34.03 kcal Atomic # 14 Polarization: 38.70 SS G_CDS: 1.90 Total: 40.60 kcal Total: -82.64 -1.21 -83.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076668259.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.733 kcal (2) G-P(sol) polarization free energy of solvation -82.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds