Wall clock time and date at job start Wed Apr 1 2020 04:50:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35248 * 126.06939 * 2 1 4 4 C 1.40399 * 107.86567 * 179.97438 * 3 2 1 5 5 N 1.40195 * 125.96997 * 180.02562 * 4 3 2 6 6 C 1.34777 * 120.00054 * 359.97438 * 5 4 3 7 7 O 1.21588 * 120.00204 * 0.02562 * 6 5 4 8 8 N 1.34784 * 119.99912 * 179.97438 * 6 5 4 9 9 C 1.46499 * 119.99971 * 180.02562 * 8 6 5 10 10 H 1.08999 * 110.43347 * 325.70466 * 9 8 6 11 11 C 1.54991 * 110.48633 * 88.24633 * 9 8 6 12 12 C 1.55192 * 104.93084 * 121.17454 * 11 9 8 13 13 N 1.47096 * 103.52857 * 23.98925 * 12 11 9 14 14 C 1.45665 * 116.52375 * 197.61826 * 13 12 11 15 15 C 1.53632 * 107.80380 * 182.64500 * 14 13 12 16 16 C 1.52815 * 110.71194 * 302.62573 * 15 14 13 17 17 C 1.53663 * 110.60302 * 53.74197 * 16 15 14 18 18 C 1.48918 * 103.79267 * 317.84904 * 13 12 11 19 19 H 1.09001 * 110.29547 * 286.06371 * 18 13 12 20 20 N 1.31207 * 108.05703 * 0.26138 * 4 3 2 21 21 N 1.34962 * 126.07086 * 179.97438 * 2 1 3 22 22 C 1.46501 * 125.97921 * 0.02562 * 21 2 1 23 23 C 1.50706 * 109.46705 * 89.99903 * 22 21 2 24 24 H 1.08000 * 120.00223 * 0.02562 * 23 22 21 25 25 C 1.37878 * 119.99582 * 180.02562 * 23 22 21 26 26 N 1.31521 * 120.00074 * 359.97438 * 25 23 22 27 27 Si 1.86801 * 119.99940 * 180.02562 * 25 23 22 28 28 H 1.48492 * 109.47017 * 359.97438 * 27 25 23 29 29 H 1.48497 * 109.47282 * 120.00149 * 27 25 23 30 30 H 1.48505 * 109.46973 * 240.00174 * 27 25 23 31 31 H 1.08995 * 109.47331 * 90.02694 * 1 2 3 32 32 H 1.09001 * 109.47068 * 210.02595 * 1 2 3 33 33 H 1.08992 * 109.47367 * 330.02161 * 1 2 3 34 34 H 1.08000 * 126.06632 * 0.02562 * 3 2 1 35 35 H 0.97009 * 120.00101 * 179.72531 * 5 4 3 36 36 H 0.96999 * 120.00044 * 0.02562 * 8 6 5 37 37 H 1.09005 * 110.34884 * 240.03112 * 11 9 8 38 38 H 1.08997 * 110.34799 * 2.19885 * 11 9 8 39 39 H 1.08998 * 110.61310 * 142.50173 * 12 11 9 40 40 H 1.09008 * 110.60773 * 265.48069 * 12 11 9 41 41 H 1.08994 * 109.79726 * 302.21958 * 14 13 12 42 42 H 1.08998 * 109.79867 * 63.01225 * 14 13 12 43 43 H 1.08993 * 109.22969 * 62.94842 * 15 14 13 44 44 H 1.09004 * 109.22714 * 182.35147 * 15 14 13 45 45 H 1.09000 * 109.25049 * 174.02898 * 16 15 14 46 46 H 1.08999 * 109.25013 * 293.49418 * 16 15 14 47 47 H 1.08998 * 109.84018 * 63.39188 * 17 16 15 48 48 H 1.08998 * 109.84034 * 184.29851 * 17 16 15 49 49 H 1.08997 * 109.47026 * 209.99456 * 22 21 2 50 50 H 1.08995 * 109.46977 * 330.00250 * 22 21 2 51 51 H 0.96999 * 119.99722 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0932 0.0000 4 6 3.6370 0.6546 0.0006 5 7 4.7737 1.4752 0.0013 6 6 4.6369 2.8160 0.0009 7 8 3.5276 3.3140 0.0005 8 7 5.7297 3.6049 0.0021 9 6 5.5810 5.0624 0.0023 10 1 4.7035 5.3554 -0.5740 11 6 5.4804 5.5972 1.4535 12 6 6.6649 6.5896 1.5969 13 7 6.9401 6.9995 0.2113 14 6 8.2359 7.6157 -0.0395 15 6 8.2842 8.0217 -1.5205 16 6 8.0470 6.8102 -2.4210 17 6 6.7438 6.0946 -2.0326 18 6 6.8401 5.7301 -0.5609 19 1 7.7140 5.1053 -0.3762 20 7 3.6336 -0.6574 -0.0047 21 7 2.3016 -1.0909 0.0005 22 6 1.8501 -2.4846 0.0006 23 6 1.6958 -2.9626 -1.4203 24 1 1.9128 -2.2952 -2.2412 25 6 1.2776 -4.2521 -1.6721 26 7 1.0139 -5.0650 -0.6724 27 14 1.0870 -4.8450 -3.4333 28 1 1.4438 -3.7466 -4.3667 29 1 1.9858 -6.0040 -3.6654 30 1 -0.3208 -5.2555 -3.6678 31 1 -0.3634 -0.0005 -1.0276 32 1 -0.3633 -0.8898 0.5142 33 1 -0.3634 0.8901 0.5135 34 1 1.9719 2.1211 0.0004 35 1 5.6587 1.0780 0.0057 36 1 6.6146 3.2077 0.0029 37 1 4.5325 6.1145 1.6019 38 1 5.5806 4.7791 2.1667 39 1 6.3743 7.4492 2.2008 40 1 7.5327 6.0913 2.0293 41 1 8.3528 8.4984 0.5891 42 1 9.0317 6.9023 0.1745 43 1 7.5141 8.7686 -1.7132 44 1 9.2620 8.4485 -1.7440 45 1 7.9803 7.1405 -3.4577 46 1 8.8815 6.1167 -2.3178 47 1 5.8947 6.7588 -2.1941 48 1 6.6254 5.1911 -2.6307 49 1 2.5846 -3.1044 0.5147 50 1 0.8913 -2.5558 0.5140 51 1 0.7193 -5.9720 -0.8497 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272052118.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:50:50 Heat of formation + Delta-G solvation = 53.141878 kcal Electronic energy + Delta-G solvation = -30377.989423 eV Core-core repulsion = 26313.739799 eV Total energy + Delta-G solvation = -4064.249624 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.95196 -40.43632 -39.27868 -35.87385 -34.71380 -34.12485 -33.33123 -31.84278 -31.19700 -30.65563 -29.53386 -27.20410 -26.43126 -26.22135 -23.53393 -23.18500 -22.11926 -22.03940 -20.71386 -20.37257 -19.76812 -19.44354 -17.76277 -16.82417 -16.66440 -16.02907 -15.87219 -15.49218 -15.20296 -15.16294 -14.81490 -14.52682 -14.26539 -14.03858 -13.99364 -13.77207 -13.73535 -12.98908 -12.94974 -12.75857 -12.46619 -12.36851 -12.25249 -12.04022 -11.74110 -11.62710 -11.57609 -11.37348 -11.23031 -11.07283 -11.01380 -10.84714 -10.83209 -10.68605 -10.40413 -10.23791 -9.98697 -9.63964 -9.50311 -9.21139 -8.84723 -8.63370 -7.88493 -7.37680 -6.24070 -4.31370 2.35697 2.67425 3.11931 3.20998 3.28872 3.34660 3.45514 3.73449 3.85411 4.05865 4.25712 4.27830 4.36912 4.50541 4.65959 4.71109 4.76297 4.85408 4.90117 5.05815 5.09618 5.12120 5.23932 5.30572 5.42539 5.46126 5.48698 5.57943 5.61611 5.68884 5.73176 5.75652 5.84108 5.89992 5.95638 6.01159 6.14806 6.19923 6.26032 6.48881 6.52371 6.63666 6.65510 6.78653 6.97500 7.07785 7.16015 7.55469 7.69214 7.90836 7.96845 8.09851 8.61777 8.70250 8.78390 9.34839 10.83098 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.020856 B = 0.001934 C = 0.001847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.185599 B =14477.781883 C =15159.062675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.091 3.909 3 C -0.289 4.289 4 C 0.282 3.718 5 N -0.644 5.644 6 C 0.714 3.286 7 O -0.563 6.563 8 N -0.739 5.739 9 C 0.170 3.830 10 H 0.105 0.895 11 C -0.134 4.134 12 C 0.042 3.958 13 N -0.521 5.521 14 C 0.055 3.945 15 C -0.115 4.115 16 C -0.120 4.120 17 C -0.106 4.106 18 C 0.059 3.941 19 H 0.055 0.945 20 N -0.325 5.325 21 N -0.318 5.318 22 C 0.258 3.742 23 C -0.533 4.533 24 H 0.065 0.935 25 C 0.064 3.936 26 N -0.892 5.892 27 Si 0.906 3.094 28 H -0.271 1.271 29 H -0.281 1.281 30 H -0.281 1.281 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.161 0.839 35 H 0.405 0.595 36 H 0.394 0.606 37 H 0.082 0.918 38 H 0.075 0.925 39 H 0.083 0.917 40 H 0.040 0.960 41 H 0.076 0.924 42 H 0.033 0.967 43 H 0.071 0.929 44 H 0.065 0.935 45 H 0.065 0.935 46 H 0.057 0.943 47 H 0.078 0.922 48 H 0.070 0.930 49 H 0.051 0.949 50 H 0.054 0.946 51 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.831 24.721 2.287 28.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.041 4.041 3 C -0.320 4.320 4 C 0.029 3.971 5 N -0.294 5.294 6 C 0.413 3.587 7 O -0.437 6.437 8 N -0.395 5.395 9 C 0.064 3.936 10 H 0.123 0.877 11 C -0.173 4.173 12 C -0.085 4.085 13 N -0.246 5.246 14 C -0.073 4.073 15 C -0.153 4.153 16 C -0.158 4.158 17 C -0.144 4.144 18 C -0.050 4.050 19 H 0.073 0.927 20 N -0.155 5.155 21 N -0.101 5.101 22 C 0.141 3.859 23 C -0.572 4.572 24 H 0.083 0.917 25 C -0.139 4.139 26 N -0.530 5.530 27 Si 0.733 3.267 28 H -0.196 1.196 29 H -0.207 1.207 30 H -0.207 1.207 31 H 0.095 0.905 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.178 0.822 35 H 0.240 0.760 36 H 0.228 0.772 37 H 0.100 0.900 38 H 0.094 0.906 39 H 0.101 0.899 40 H 0.059 0.941 41 H 0.094 0.906 42 H 0.052 0.948 43 H 0.090 0.910 44 H 0.083 0.917 45 H 0.084 0.916 46 H 0.076 0.924 47 H 0.096 0.904 48 H 0.088 0.912 49 H 0.069 0.931 50 H 0.072 0.928 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 13.082 24.246 2.189 27.637 hybrid contribution 1.165 -0.821 -0.589 1.542 sum 14.247 23.425 1.600 27.464 Atomic orbital electron populations 1.20324 0.87944 1.02772 1.03135 1.21058 0.94880 0.87179 1.00972 1.21234 0.89681 0.99812 1.21256 1.18654 0.86553 0.89240 1.02662 1.41402 1.07572 1.03742 1.76683 1.15604 0.84761 0.80348 0.77944 1.90876 1.23437 1.73403 1.56029 1.45126 1.07518 1.06032 1.80850 1.21286 0.98672 0.77283 0.96361 0.87719 1.23040 0.98932 0.98574 0.96772 1.22879 0.97306 0.98488 0.89868 1.63892 1.30885 1.22479 1.07337 1.22038 0.89079 0.98894 0.97293 1.21594 1.01829 0.98338 0.93557 1.21587 0.97488 0.97193 0.99537 1.21452 0.98574 1.00782 0.93576 1.22585 0.96720 0.90613 0.95049 0.92663 1.77244 0.99957 1.08342 1.29980 1.48951 1.00892 1.07712 1.52524 1.19677 0.95946 0.71406 0.98898 1.21371 1.46481 0.97916 0.91446 0.91710 1.24935 0.94745 0.96106 0.98093 1.69933 1.45096 1.07074 1.30925 0.86307 0.77851 0.78780 0.83784 1.19589 1.20689 1.20655 0.90461 0.90918 0.90836 0.82212 0.76025 0.77173 0.89963 0.90602 0.89895 0.94149 0.90557 0.94846 0.91022 0.91673 0.91576 0.92444 0.90373 0.91155 0.93063 0.92799 0.92347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.45 10.11 36.00 0.36 -1.09 16 2 C 0.09 1.93 6.92 -82.28 -0.57 1.36 16 3 C -0.29 -6.04 9.52 -39.83 -0.38 -6.42 16 4 C 0.28 5.80 8.11 -154.37 -1.25 4.55 16 5 N -0.64 -10.03 5.46 -15.51 -0.08 -10.12 16 6 C 0.71 10.44 8.53 -86.91 -0.74 9.70 16 7 O -0.56 -10.18 13.15 5.29 0.07 -10.11 16 8 N -0.74 -7.36 5.06 -57.52 -0.29 -7.65 16 9 C 0.17 1.61 3.01 -66.75 -0.20 1.41 16 10 H 0.10 1.22 7.47 -51.93 -0.39 0.83 16 11 C -0.13 -1.18 6.84 -24.52 -0.17 -1.35 16 12 C 0.04 0.31 6.71 -2.56 -0.02 0.29 16 13 N -0.52 -3.96 4.84 -224.53 -1.09 -5.05 16 14 C 0.06 0.35 5.87 -4.16 -0.02 0.32 16 15 C -0.12 -0.67 6.06 -26.50 -0.16 -0.83 16 16 C -0.12 -0.74 5.95 -26.48 -0.16 -0.90 16 17 C -0.11 -0.79 5.64 -26.93 -0.15 -0.94 16 18 C 0.06 0.45 2.17 -67.01 -0.15 0.30 16 19 H 0.06 0.40 7.64 -51.93 -0.40 0.00 16 20 N -0.32 -7.55 12.59 31.44 0.40 -7.15 16 21 N -0.32 -7.63 3.59 -58.33 -0.21 -7.84 16 22 C 0.26 6.68 5.99 -5.19 -0.03 6.65 16 23 C -0.53 -14.79 9.39 -34.44 -0.32 -15.12 16 24 H 0.06 1.86 7.81 -52.49 -0.41 1.45 16 25 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 26 N -0.89 -25.16 13.29 55.43 0.74 -24.42 16 27 Si 0.91 21.22 29.54 -169.99 -5.02 16.20 16 28 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 29 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 30 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 31 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 32 H 0.07 1.26 7.07 -51.93 -0.37 0.90 16 33 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.16 3.29 5.91 -52.49 -0.31 2.98 16 35 H 0.41 5.03 8.84 -40.82 -0.36 4.67 16 36 H 0.39 2.84 8.40 -40.82 -0.34 2.50 16 37 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.08 0.71 7.96 -51.93 -0.41 0.30 16 39 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.04 0.28 8.14 -51.92 -0.42 -0.15 16 41 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.03 0.21 7.99 -51.93 -0.41 -0.21 16 43 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 44 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 45 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 47 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 48 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 49 H 0.05 1.41 8.14 -51.93 -0.42 0.98 16 50 H 0.05 1.38 7.04 -51.93 -0.37 1.01 16 51 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 405.40 15.07 6.11 6.11 Total: -1.00 -32.56 405.40 -11.84 -44.40 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: -8.40 Total: 6.02 kcal Atomic # 6 Polarization: 3.67 SS G_CDS: -4.06 Total: -0.38 kcal Atomic # 7 Polarization: -61.69 SS G_CDS: -0.54 Total: -62.23 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: 0.07 Total: -10.11 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -32.56 -11.84 -44.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272052118.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.539 kcal (2) G-P(sol) polarization free energy of solvation -32.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.397 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds