Wall clock time and date at job start Wed Apr 1 2020 04:50:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35248 * 126.06939 * 2 1 4 4 C 1.40399 * 107.86567 * 179.97438 * 3 2 1 5 5 N 1.40195 * 125.96997 * 180.02562 * 4 3 2 6 6 C 1.34777 * 120.00054 * 359.97438 * 5 4 3 7 7 O 1.21588 * 120.00204 * 0.02562 * 6 5 4 8 8 N 1.34784 * 119.99912 * 179.97438 * 6 5 4 9 9 C 1.46499 * 119.99971 * 180.02562 * 8 6 5 10 10 H 1.08999 * 110.43347 * 325.70466 * 9 8 6 11 11 C 1.54991 * 110.48633 * 88.24633 * 9 8 6 12 12 C 1.55192 * 104.93084 * 121.17454 * 11 9 8 13 13 N 1.47096 * 103.52857 * 23.98925 * 12 11 9 14 14 C 1.45665 * 116.52375 * 197.61826 * 13 12 11 15 15 C 1.53632 * 107.80380 * 182.64500 * 14 13 12 16 16 C 1.52815 * 110.71194 * 302.62573 * 15 14 13 17 17 C 1.53663 * 110.60302 * 53.74197 * 16 15 14 18 18 C 1.48918 * 103.79267 * 317.84904 * 13 12 11 19 19 H 1.09001 * 110.29547 * 286.06371 * 18 13 12 20 20 N 1.31207 * 108.05703 * 0.26138 * 4 3 2 21 21 N 1.34962 * 126.07086 * 179.97438 * 2 1 3 22 22 C 1.46501 * 125.97921 * 0.02562 * 21 2 1 23 23 C 1.50706 * 109.46705 * 89.99903 * 22 21 2 24 24 H 1.08000 * 120.00223 * 0.02562 * 23 22 21 25 25 C 1.37878 * 119.99582 * 180.02562 * 23 22 21 26 26 N 1.31521 * 120.00074 * 359.97438 * 25 23 22 27 27 Si 1.86801 * 119.99940 * 180.02562 * 25 23 22 28 28 H 1.48492 * 109.47017 * 359.97438 * 27 25 23 29 29 H 1.48497 * 109.47282 * 120.00149 * 27 25 23 30 30 H 1.48505 * 109.46973 * 240.00174 * 27 25 23 31 31 H 1.08995 * 109.47331 * 90.02694 * 1 2 3 32 32 H 1.09001 * 109.47068 * 210.02595 * 1 2 3 33 33 H 1.08992 * 109.47367 * 330.02161 * 1 2 3 34 34 H 1.08000 * 126.06632 * 0.02562 * 3 2 1 35 35 H 0.97009 * 120.00101 * 179.72531 * 5 4 3 36 36 H 0.96999 * 120.00044 * 0.02562 * 8 6 5 37 37 H 1.09005 * 110.34884 * 240.03112 * 11 9 8 38 38 H 1.08997 * 110.34799 * 2.19885 * 11 9 8 39 39 H 1.08998 * 110.61310 * 142.50173 * 12 11 9 40 40 H 1.09008 * 110.60773 * 265.48069 * 12 11 9 41 41 H 1.08994 * 109.79726 * 302.21958 * 14 13 12 42 42 H 1.08998 * 109.79867 * 63.01225 * 14 13 12 43 43 H 1.08993 * 109.22969 * 62.94842 * 15 14 13 44 44 H 1.09004 * 109.22714 * 182.35147 * 15 14 13 45 45 H 1.09000 * 109.25049 * 174.02898 * 16 15 14 46 46 H 1.08999 * 109.25013 * 293.49418 * 16 15 14 47 47 H 1.08998 * 109.84018 * 63.39188 * 17 16 15 48 48 H 1.08998 * 109.84034 * 184.29851 * 17 16 15 49 49 H 1.08997 * 109.47026 * 209.99456 * 22 21 2 50 50 H 1.08995 * 109.46977 * 330.00250 * 22 21 2 51 51 H 0.96999 * 119.99722 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0932 0.0000 4 6 3.6370 0.6546 0.0006 5 7 4.7737 1.4752 0.0013 6 6 4.6369 2.8160 0.0009 7 8 3.5276 3.3140 0.0005 8 7 5.7297 3.6049 0.0021 9 6 5.5810 5.0624 0.0023 10 1 4.7035 5.3554 -0.5740 11 6 5.4804 5.5972 1.4535 12 6 6.6649 6.5896 1.5969 13 7 6.9401 6.9995 0.2113 14 6 8.2359 7.6157 -0.0395 15 6 8.2842 8.0217 -1.5205 16 6 8.0470 6.8102 -2.4210 17 6 6.7438 6.0946 -2.0326 18 6 6.8401 5.7301 -0.5609 19 1 7.7140 5.1053 -0.3762 20 7 3.6336 -0.6574 -0.0047 21 7 2.3016 -1.0909 0.0005 22 6 1.8501 -2.4846 0.0006 23 6 1.6958 -2.9626 -1.4203 24 1 1.9128 -2.2952 -2.2412 25 6 1.2776 -4.2521 -1.6721 26 7 1.0139 -5.0650 -0.6724 27 14 1.0870 -4.8450 -3.4333 28 1 1.4438 -3.7466 -4.3667 29 1 1.9858 -6.0040 -3.6654 30 1 -0.3208 -5.2555 -3.6678 31 1 -0.3634 -0.0005 -1.0276 32 1 -0.3633 -0.8898 0.5142 33 1 -0.3634 0.8901 0.5135 34 1 1.9719 2.1211 0.0004 35 1 5.6587 1.0780 0.0057 36 1 6.6146 3.2077 0.0029 37 1 4.5325 6.1145 1.6019 38 1 5.5806 4.7791 2.1667 39 1 6.3743 7.4492 2.2008 40 1 7.5327 6.0913 2.0293 41 1 8.3528 8.4984 0.5891 42 1 9.0317 6.9023 0.1745 43 1 7.5141 8.7686 -1.7132 44 1 9.2620 8.4485 -1.7440 45 1 7.9803 7.1405 -3.4577 46 1 8.8815 6.1167 -2.3178 47 1 5.8947 6.7588 -2.1941 48 1 6.6254 5.1911 -2.6307 49 1 2.5846 -3.1044 0.5147 50 1 0.8913 -2.5558 0.5140 51 1 0.7193 -5.9720 -0.8497 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272052118.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:50:49 Heat of formation + Delta-G solvation = 31.881620 kcal Electronic energy + Delta-G solvation = -30378.911337 eV Core-core repulsion = 26313.739799 eV Total energy + Delta-G solvation = -4065.171538 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.32666 -41.48436 -40.38745 -36.74353 -36.12565 -35.32733 -34.84040 -33.11536 -32.64046 -32.04451 -30.15499 -28.66031 -27.87955 -27.52981 -25.04822 -24.06787 -23.31949 -22.72102 -21.57715 -21.42131 -21.15195 -20.58712 -19.04588 -18.76003 -17.89569 -17.35691 -16.85774 -16.74113 -16.34341 -16.21316 -16.03604 -15.65389 -15.55803 -15.34676 -14.83447 -14.65012 -14.38438 -14.34033 -14.31022 -13.78929 -13.72124 -13.58008 -13.49830 -13.37228 -13.14895 -12.91103 -12.82420 -12.67073 -12.35645 -12.25394 -12.18287 -12.07778 -11.83976 -11.56721 -11.52727 -11.46088 -11.33958 -11.20881 -11.12433 -10.72973 -10.19786 -9.55079 -9.40036 -9.06830 -8.31910 -6.49511 1.02695 1.10255 1.37116 1.38775 1.51593 1.67464 2.06352 2.35451 2.39458 2.90505 2.97397 3.24136 3.41026 3.64051 3.87397 3.98753 4.03595 4.11783 4.16385 4.18492 4.25358 4.33542 4.45295 4.51832 4.53955 4.65510 4.73339 4.77144 4.80954 4.88990 4.90286 4.90908 4.92082 5.00252 5.03122 5.04614 5.09428 5.14476 5.17161 5.22339 5.25499 5.32090 5.46554 5.49082 5.54948 5.82046 5.85813 5.92234 5.98706 6.24369 6.28439 6.62643 6.74858 7.13779 7.21348 7.43039 8.73883 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.020856 B = 0.001934 C = 0.001847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.185599 B =14477.781883 C =15159.062675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.087 3.913 3 C -0.298 4.298 4 C 0.293 3.707 5 N -0.635 5.635 6 C 0.714 3.286 7 O -0.597 6.597 8 N -0.715 5.715 9 C 0.168 3.832 10 H 0.081 0.919 11 C -0.132 4.132 12 C 0.049 3.951 13 N -0.532 5.532 14 C 0.054 3.946 15 C -0.113 4.113 16 C -0.118 4.118 17 C -0.107 4.107 18 C 0.067 3.933 19 H 0.068 0.932 20 N -0.360 5.360 21 N -0.343 5.343 22 C 0.275 3.725 23 C -0.551 4.551 24 H 0.049 0.951 25 C 0.022 3.978 26 N -0.918 5.918 27 Si 0.972 3.028 28 H -0.274 1.274 29 H -0.274 1.274 30 H -0.267 1.267 31 H 0.083 0.917 32 H 0.069 0.931 33 H 0.105 0.895 34 H 0.166 0.834 35 H 0.421 0.579 36 H 0.412 0.588 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.090 0.910 40 H 0.051 0.949 41 H 0.084 0.916 42 H 0.039 0.961 43 H 0.063 0.937 44 H 0.080 0.920 45 H 0.069 0.931 46 H 0.063 0.937 47 H 0.065 0.935 48 H 0.066 0.934 49 H 0.025 0.975 50 H 0.052 0.948 51 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.065 26.000 1.667 30.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.044 4.044 3 C -0.329 4.329 4 C 0.038 3.962 5 N -0.287 5.287 6 C 0.414 3.586 7 O -0.474 6.474 8 N -0.371 5.371 9 C 0.062 3.938 10 H 0.099 0.901 11 C -0.171 4.171 12 C -0.079 4.079 13 N -0.257 5.257 14 C -0.074 4.074 15 C -0.151 4.151 16 C -0.155 4.155 17 C -0.145 4.145 18 C -0.042 4.042 19 H 0.086 0.914 20 N -0.191 5.191 21 N -0.126 5.126 22 C 0.156 3.844 23 C -0.589 4.589 24 H 0.067 0.933 25 C -0.179 4.179 26 N -0.556 5.556 27 Si 0.796 3.204 28 H -0.199 1.199 29 H -0.200 1.200 30 H -0.192 1.192 31 H 0.101 0.899 32 H 0.087 0.913 33 H 0.124 0.876 34 H 0.183 0.817 35 H 0.258 0.742 36 H 0.249 0.751 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.108 0.892 40 H 0.069 0.931 41 H 0.102 0.898 42 H 0.057 0.943 43 H 0.082 0.918 44 H 0.098 0.902 45 H 0.088 0.912 46 H 0.082 0.918 47 H 0.084 0.916 48 H 0.085 0.915 49 H 0.043 0.957 50 H 0.070 0.930 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 14.379 25.559 1.580 29.368 hybrid contribution 0.830 -1.081 -0.358 1.409 sum 15.209 24.478 1.223 28.844 Atomic orbital electron populations 1.20459 0.85411 1.04176 1.03908 1.21732 0.96634 0.86477 0.99539 1.21398 0.89988 0.99842 1.21624 1.18930 0.88047 0.88881 1.00356 1.41376 1.07054 1.03783 1.76517 1.15741 0.85279 0.80019 0.77593 1.90848 1.25194 1.73839 1.57538 1.44938 1.07139 1.05967 1.79081 1.21336 0.98983 0.76596 0.96849 0.90076 1.22979 0.99395 0.98802 0.95956 1.22837 0.96773 0.98322 0.89935 1.63898 1.32063 1.22336 1.07402 1.22106 0.88371 0.99194 0.97683 1.21590 1.02391 0.97934 0.93208 1.21574 0.96737 0.97362 0.99874 1.21443 0.99012 1.00551 0.93449 1.22495 0.95843 0.90766 0.95076 0.91436 1.77165 1.00045 1.09729 1.32133 1.48752 1.01673 1.07443 1.54713 1.19246 0.94936 0.72454 0.97762 1.21464 1.47320 0.98330 0.91788 0.93310 1.25736 0.94012 0.95961 1.02208 1.70011 1.45188 1.07548 1.32887 0.85302 0.78466 0.78066 0.78600 1.19899 1.19953 1.19214 0.89858 0.91257 0.87643 0.81680 0.74189 0.75111 0.91012 0.90999 0.89196 0.93118 0.89796 0.94258 0.91824 0.90188 0.91197 0.91794 0.91626 0.91532 0.95731 0.92980 0.91758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.78 10.11 71.23 0.72 -2.06 16 2 C 0.09 3.72 6.92 41.39 0.29 4.01 16 3 C -0.30 -12.47 9.52 22.11 0.21 -12.26 16 4 C 0.29 12.09 8.11 133.31 1.08 13.17 16 5 N -0.64 -19.40 5.46 -321.23 -1.75 -21.15 16 6 C 0.71 20.41 8.53 179.05 1.53 21.93 16 7 O -0.60 -21.54 13.15 -3.99 -0.05 -21.59 16 8 N -0.71 -13.33 5.06 -454.15 -2.30 -15.63 16 9 C 0.17 3.04 3.01 45.76 0.14 3.18 16 10 H 0.08 1.91 7.47 -2.39 -0.02 1.89 16 11 C -0.13 -2.21 6.84 32.03 0.22 -1.99 16 12 C 0.05 0.62 6.71 87.02 0.58 1.20 16 13 N -0.53 -7.12 4.84 -864.28 -4.19 -11.31 16 14 C 0.05 0.55 5.87 86.75 0.51 1.06 16 15 C -0.11 -1.07 6.06 30.75 0.19 -0.89 16 16 C -0.12 -1.22 5.95 30.76 0.18 -1.04 16 17 C -0.11 -1.46 5.64 30.46 0.17 -1.29 16 18 C 0.07 0.91 2.17 44.25 0.10 1.01 16 19 H 0.07 0.78 7.64 -2.39 -0.02 0.76 16 20 N -0.36 -17.08 12.59 -54.44 -0.69 -17.77 16 21 N -0.34 -16.85 3.59 -338.45 -1.22 -18.07 16 22 C 0.27 14.68 5.99 85.63 0.51 15.19 16 23 C -0.55 -31.14 9.39 25.60 0.24 -30.90 16 24 H 0.05 2.86 7.81 -2.91 -0.02 2.84 16 25 C 0.02 1.19 5.46 84.65 0.46 1.66 16 26 N -0.92 -52.03 13.29 21.45 0.28 -51.75 16 27 Si 0.97 43.35 29.54 68.60 2.03 45.38 16 28 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 29 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 30 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 31 H 0.08 2.75 8.14 -2.39 -0.02 2.73 16 32 H 0.07 2.40 7.07 -2.39 -0.02 2.39 16 33 H 0.10 2.88 8.14 -2.39 -0.02 2.86 16 34 H 0.17 6.77 5.91 -2.91 -0.02 6.75 16 35 H 0.42 9.98 8.84 -92.70 -0.82 9.16 16 36 H 0.41 5.04 8.40 -92.71 -0.78 4.26 16 37 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 38 H 0.07 1.26 7.96 -2.39 -0.02 1.25 16 39 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.05 0.56 8.14 -2.38 -0.02 0.54 16 41 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 42 H 0.04 0.37 7.99 -2.39 -0.02 0.35 16 43 H 0.06 0.71 8.14 -2.39 -0.02 0.70 16 44 H 0.08 0.54 8.14 -2.38 -0.02 0.52 16 45 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 46 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 47 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 48 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 49 H 0.02 1.42 8.14 -2.39 -0.02 1.40 16 50 H 0.05 2.75 7.04 -2.39 -0.02 2.73 16 51 H 0.27 14.40 8.31 -92.71 -0.77 13.63 16 Total: -1.00 -70.80 405.40 -1.40 -72.20 By element: Atomic # 1 Polarization: 28.35 SS G_CDS: -0.65 Total: 27.70 kcal Atomic # 6 Polarization: 4.84 SS G_CDS: 7.13 Total: 11.97 kcal Atomic # 7 Polarization: -125.81 SS G_CDS: -9.85 Total: -135.66 kcal Atomic # 8 Polarization: -21.54 SS G_CDS: -0.05 Total: -21.59 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Total: -70.80 -1.40 -72.20 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272052118.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.085 kcal (2) G-P(sol) polarization free energy of solvation -70.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.203 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds