Wall clock time and date at job start Wed Apr 1 2020 04:50:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.35243 * 126.07050 * 2 1 4 4 C 1.40406 * 107.86913 * 180.02562 * 3 2 1 5 5 N 1.40194 * 125.96976 * 180.02562 * 4 3 2 6 6 C 1.34775 * 120.00241 * 0.02562 * 5 4 3 7 7 O 1.21586 * 120.00176 * 359.97438 * 6 5 4 8 8 N 1.34779 * 119.99900 * 180.02562 * 6 5 4 9 9 C 1.46500 * 119.99967 * 179.97438 * 8 6 5 10 10 H 1.09000 * 110.43769 * 32.45048 * 9 8 6 11 11 C 1.54991 * 110.48649 * 269.76536 * 9 8 6 12 12 C 1.55203 * 104.93034 * 243.81709 * 11 9 8 13 13 N 1.47091 * 103.52034 * 23.99296 * 12 11 9 14 14 C 1.45670 * 116.53679 * 197.56896 * 13 12 11 15 15 C 1.53619 * 107.80228 * 182.69221 * 14 13 12 16 16 C 1.52831 * 110.69641 * 302.62336 * 15 14 13 17 17 C 1.53664 * 110.60769 * 53.75128 * 16 15 14 18 18 C 1.48721 * 103.70847 * 317.76759 * 13 12 11 19 19 H 1.09004 * 110.33980 * 286.14498 * 18 13 12 20 20 N 1.31202 * 108.05331 * 359.72280 * 4 3 2 21 21 N 1.34972 * 126.07405 * 180.02562 * 2 1 3 22 22 C 1.46493 * 125.97304 * 359.97103 * 21 2 1 23 23 C 1.50706 * 109.47128 * 90.00463 * 22 21 2 24 24 H 1.08000 * 119.99302 * 359.97438 * 23 22 21 25 25 C 1.37871 * 120.00436 * 179.72498 * 23 22 21 26 26 N 1.31515 * 119.99684 * 359.97438 * 25 23 22 27 27 Si 1.86800 * 120.00405 * 180.02562 * 25 23 22 28 28 H 1.48496 * 109.46683 * 359.97438 * 27 25 23 29 29 H 1.48492 * 109.47426 * 119.99743 * 27 25 23 30 30 H 1.48501 * 109.46833 * 239.99986 * 27 25 23 31 31 H 1.09000 * 109.47177 * 269.97111 * 1 2 3 32 32 H 1.09003 * 109.47455 * 29.96867 * 1 2 3 33 33 H 1.09007 * 109.47280 * 149.97441 * 1 2 3 34 34 H 1.08002 * 126.06819 * 0.04941 * 3 2 1 35 35 H 0.97001 * 119.99602 * 180.02562 * 5 4 3 36 36 H 0.97001 * 119.99943 * 359.97438 * 8 6 5 37 37 H 1.08991 * 110.35147 * 2.67878 * 11 9 8 38 38 H 1.08994 * 110.34831 * 124.95605 * 11 9 8 39 39 H 1.08997 * 110.61026 * 265.48417 * 12 11 9 40 40 H 1.08999 * 110.74376 * 142.56753 * 12 11 9 41 41 H 1.09002 * 109.79540 * 302.26389 * 14 13 12 42 42 H 1.09003 * 109.79154 * 63.11467 * 14 13 12 43 43 H 1.08999 * 109.23531 * 62.93766 * 15 14 13 44 44 H 1.09001 * 109.23530 * 182.35166 * 15 14 13 45 45 H 1.09001 * 109.24657 * 174.03889 * 16 15 14 46 46 H 1.09000 * 109.24683 * 293.49653 * 16 15 14 47 47 H 1.08996 * 109.83030 * 184.35129 * 17 16 15 48 48 H 1.08998 * 109.83877 * 63.38964 * 17 16 15 49 49 H 1.09001 * 109.47786 * 330.00736 * 22 21 2 50 50 H 1.08998 * 109.47558 * 210.00599 * 22 21 2 51 51 H 0.97004 * 120.00247 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3032 1.0932 0.0000 4 6 3.6370 0.6546 -0.0006 5 7 4.7737 1.4752 -0.0003 6 6 4.6369 2.8160 0.0012 7 8 3.5276 3.3140 0.0018 8 7 5.7297 3.6049 0.0010 9 6 5.5810 5.0623 0.0020 10 1 4.6852 5.3532 0.5508 11 6 5.5308 5.6035 -1.4495 12 6 6.7930 6.4961 -1.5872 13 7 7.7052 5.9620 -0.5644 14 6 8.8140 6.8202 -0.1692 15 6 9.6679 6.0464 0.8466 16 6 8.8241 5.6185 2.0468 17 6 7.5817 4.8411 1.5849 18 6 6.8213 5.7277 0.6084 19 1 6.5521 6.6751 1.0753 20 7 3.6337 -0.6574 0.0051 21 7 2.3017 -1.0909 -0.0005 22 6 1.8502 -2.4845 -0.0005 23 6 1.6948 -2.9622 -1.4214 24 1 1.9105 -2.2943 -2.2422 25 6 1.2824 -4.2534 -1.6735 26 7 1.0250 -5.0684 -0.6739 27 14 1.0906 -4.8458 -3.4346 28 1 1.4398 -3.7448 -4.3679 29 1 1.9945 -6.0001 -3.6699 30 1 -0.3157 -5.2630 -3.6661 31 1 -0.3633 -0.0005 1.0277 32 1 -0.3634 0.8903 -0.5133 33 1 -0.3634 -0.8898 -0.5143 34 1 1.9720 2.1211 0.0008 35 1 5.6586 1.0780 -0.0011 36 1 6.6146 3.2077 0.0001 37 1 5.5693 4.7801 -2.1626 38 1 4.6290 6.1963 -1.6020 39 1 6.5506 7.5382 -1.3788 40 1 7.2299 6.3964 -2.5809 41 1 9.4161 7.0710 -1.0425 42 1 8.4301 7.7315 0.2894 43 1 10.0833 5.1607 0.3657 44 1 10.4827 6.6837 1.1902 45 1 9.4234 4.9834 2.6992 46 1 8.5087 6.5042 2.5983 47 1 6.9505 4.6093 2.4427 48 1 7.8855 3.9195 1.0884 49 1 0.8917 -2.5560 0.5136 50 1 2.5849 -3.1046 0.5130 51 1 0.7352 -5.9770 -0.8511 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272052119.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:50:55 Heat of formation + Delta-G solvation = 55.540092 kcal Electronic energy + Delta-G solvation = -30601.908412 eV Core-core repulsion = 26537.762782 eV Total energy + Delta-G solvation = -4064.145630 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.98976 -40.43467 -39.18681 -35.77074 -34.66891 -34.21545 -33.31519 -31.70180 -31.11107 -30.57972 -29.58209 -27.26052 -26.44225 -26.22211 -23.50155 -23.20065 -22.07531 -21.98581 -20.99776 -19.92353 -19.79575 -19.38644 -17.83246 -16.66497 -16.59109 -16.18913 -15.74785 -15.49962 -15.30946 -15.11072 -14.81202 -14.48184 -14.24467 -14.12870 -13.91354 -13.76555 -13.67739 -12.93889 -12.91839 -12.56349 -12.47674 -12.44434 -12.26628 -12.04711 -11.63909 -11.62217 -11.49086 -11.37534 -11.30930 -11.03636 -10.99171 -10.83728 -10.81902 -10.70416 -10.37572 -10.22707 -9.94022 -9.60139 -9.47603 -9.18884 -8.79115 -8.62453 -7.85532 -7.34555 -6.22889 -4.30355 2.45629 2.70760 3.15778 3.21988 3.29875 3.36125 3.54442 3.66901 3.89260 4.08050 4.24999 4.30033 4.40587 4.50040 4.61890 4.74328 4.78427 4.87870 4.91352 5.08035 5.10555 5.11261 5.28995 5.31014 5.39703 5.44511 5.48219 5.55234 5.60056 5.67988 5.70004 5.76390 5.79725 5.92735 5.97594 6.00563 6.14668 6.27411 6.36127 6.49739 6.54529 6.69793 6.71025 6.79860 7.00253 7.09519 7.21832 7.59343 7.70532 7.92349 8.03356 8.12521 8.68109 8.72775 8.80611 9.35980 10.84186 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.020019 B = 0.001979 C = 0.001966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.368972 B =14145.604242 C =14236.073198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.090 3.910 3 C -0.288 4.288 4 C 0.283 3.717 5 N -0.644 5.644 6 C 0.713 3.287 7 O -0.568 6.568 8 N -0.730 5.730 9 C 0.172 3.828 10 H 0.100 0.900 11 C -0.135 4.135 12 C 0.043 3.957 13 N -0.524 5.524 14 C 0.055 3.945 15 C -0.115 4.115 16 C -0.121 4.121 17 C -0.104 4.104 18 C 0.054 3.946 19 H 0.065 0.935 20 N -0.325 5.325 21 N -0.319 5.319 22 C 0.259 3.741 23 C -0.534 4.534 24 H 0.065 0.935 25 C 0.064 3.936 26 N -0.892 5.892 27 Si 0.905 3.095 28 H -0.271 1.271 29 H -0.281 1.281 30 H -0.281 1.281 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.160 0.840 35 H 0.406 0.594 36 H 0.399 0.601 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.041 0.959 40 H 0.082 0.918 41 H 0.075 0.925 42 H 0.033 0.967 43 H 0.070 0.930 44 H 0.064 0.936 45 H 0.065 0.935 46 H 0.057 0.943 47 H 0.071 0.929 48 H 0.074 0.926 49 H 0.054 0.946 50 H 0.052 0.948 51 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.965 24.593 3.708 28.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.041 4.041 3 C -0.320 4.320 4 C 0.030 3.970 5 N -0.294 5.294 6 C 0.412 3.588 7 O -0.444 6.444 8 N -0.387 5.387 9 C 0.066 3.934 10 H 0.118 0.882 11 C -0.174 4.174 12 C -0.085 4.085 13 N -0.249 5.249 14 C -0.074 4.074 15 C -0.153 4.153 16 C -0.158 4.158 17 C -0.142 4.142 18 C -0.055 4.055 19 H 0.082 0.918 20 N -0.155 5.155 21 N -0.101 5.101 22 C 0.141 3.859 23 C -0.573 4.573 24 H 0.083 0.917 25 C -0.139 4.139 26 N -0.530 5.530 27 Si 0.733 3.267 28 H -0.196 1.196 29 H -0.207 1.207 30 H -0.207 1.207 31 H 0.088 0.912 32 H 0.093 0.907 33 H 0.100 0.900 34 H 0.177 0.823 35 H 0.240 0.760 36 H 0.235 0.765 37 H 0.099 0.901 38 H 0.096 0.904 39 H 0.059 0.941 40 H 0.100 0.900 41 H 0.093 0.907 42 H 0.052 0.948 43 H 0.089 0.911 44 H 0.083 0.917 45 H 0.084 0.916 46 H 0.076 0.924 47 H 0.090 0.910 48 H 0.092 0.908 49 H 0.071 0.929 50 H 0.070 0.930 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 13.844 23.263 3.559 27.304 hybrid contribution 0.155 0.611 -0.759 0.986 sum 13.999 23.874 2.801 27.817 Atomic orbital electron populations 1.20366 0.88033 1.03793 1.02444 1.21051 0.94855 0.87178 1.01043 1.21236 0.89716 0.99785 1.21223 1.18661 0.86586 0.89226 1.02549 1.41400 1.07537 1.03772 1.76682 1.15654 0.84832 0.80379 0.77918 1.90860 1.23604 1.73458 1.56457 1.45071 1.07648 1.05743 1.80276 1.21277 0.97722 0.78517 0.95908 0.88226 1.23080 0.97086 0.99908 0.97359 1.22865 0.92753 0.96492 0.96425 1.63919 1.08604 1.45148 1.07222 1.22027 0.93005 0.93827 0.98495 1.21594 0.97586 1.00618 0.95517 1.21594 0.96688 1.00014 0.97527 1.21435 0.96193 0.98508 0.98023 1.22738 0.92142 0.98620 0.91980 0.91751 1.77241 0.99930 1.08381 1.29988 1.48948 1.00903 1.07686 1.52614 1.19665 0.95928 0.71452 0.98863 1.21380 1.46591 0.97807 0.91474 0.91699 1.24933 0.94765 0.96091 0.98081 1.69933 1.45254 1.06894 1.30930 0.86309 0.77837 0.78792 0.83805 1.19576 1.20687 1.20666 0.91162 0.90677 0.89979 0.82255 0.76001 0.76459 0.90068 0.90433 0.94071 0.90010 0.90676 0.94838 0.91076 0.91708 0.91593 0.92388 0.91030 0.90783 0.92860 0.93048 0.92351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.54 9.89 36.00 0.36 -1.18 16 2 C 0.09 1.94 6.92 -82.28 -0.57 1.37 16 3 C -0.29 -6.08 9.52 -39.83 -0.38 -6.45 16 4 C 0.28 5.88 8.11 -154.37 -1.25 4.63 16 5 N -0.64 -10.23 5.45 -15.51 -0.08 -10.32 16 6 C 0.71 10.58 8.53 -86.92 -0.74 9.83 16 7 O -0.57 -10.30 13.12 5.29 0.07 -10.23 16 8 N -0.73 -7.56 4.51 -57.52 -0.26 -7.82 16 9 C 0.17 1.59 3.30 -66.75 -0.22 1.37 16 10 H 0.10 1.06 7.55 -51.93 -0.39 0.66 16 11 C -0.13 -1.19 6.84 -24.51 -0.17 -1.35 16 12 C 0.04 0.31 6.71 -2.55 -0.02 0.29 16 13 N -0.52 -3.82 4.84 -224.49 -1.09 -4.91 16 14 C 0.05 0.34 5.87 -4.17 -0.02 0.31 16 15 C -0.12 -0.65 6.06 -26.50 -0.16 -0.81 16 16 C -0.12 -0.70 5.95 -26.47 -0.16 -0.86 16 17 C -0.10 -0.70 5.06 -26.77 -0.14 -0.84 16 18 C 0.05 0.40 2.42 -66.96 -0.16 0.23 16 19 H 0.06 0.46 7.98 -51.93 -0.41 0.05 16 20 N -0.32 -7.62 12.59 31.44 0.40 -7.22 16 21 N -0.32 -7.69 3.59 -58.33 -0.21 -7.90 16 22 C 0.26 6.71 5.81 -5.19 -0.03 6.68 16 23 C -0.53 -14.84 9.39 -34.44 -0.32 -15.16 16 24 H 0.06 1.87 7.81 -52.49 -0.41 1.46 16 25 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 26 N -0.89 -25.22 13.29 55.43 0.74 -24.48 16 27 Si 0.91 21.27 29.54 -169.99 -5.02 16.25 16 28 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 29 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 30 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 31 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.08 1.53 7.71 -51.93 -0.40 1.13 16 34 H 0.16 3.30 5.91 -52.49 -0.31 2.99 16 35 H 0.41 5.23 8.84 -40.82 -0.36 4.87 16 36 H 0.40 3.40 6.83 -40.82 -0.28 3.12 16 37 H 0.08 0.84 7.96 -51.93 -0.41 0.42 16 38 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 40 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.03 0.20 7.99 -51.93 -0.41 -0.21 16 43 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 44 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 45 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 47 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.07 0.52 6.47 -51.93 -0.34 0.18 16 49 H 0.05 1.36 7.65 -51.93 -0.40 0.97 16 50 H 0.05 1.42 8.14 -51.93 -0.42 1.00 16 51 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 402.80 15.07 6.07 6.07 Total: -1.00 -32.36 402.80 -11.81 -44.17 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: -8.34 Total: 6.66 kcal Atomic # 6 Polarization: 3.82 SS G_CDS: -4.08 Total: -0.26 kcal Atomic # 7 Polarization: -62.15 SS G_CDS: -0.51 Total: -62.66 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: 0.07 Total: -10.23 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -32.36 -11.81 -44.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272052119.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.710 kcal (2) G-P(sol) polarization free energy of solvation -32.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds