Wall clock time and date at job start Wed Apr 1 2020 04:50:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.35243 * 126.07050 * 2 1 4 4 C 1.40406 * 107.86913 * 180.02562 * 3 2 1 5 5 N 1.40194 * 125.96976 * 180.02562 * 4 3 2 6 6 C 1.34775 * 120.00241 * 0.02562 * 5 4 3 7 7 O 1.21586 * 120.00176 * 359.97438 * 6 5 4 8 8 N 1.34779 * 119.99900 * 180.02562 * 6 5 4 9 9 C 1.46500 * 119.99967 * 179.97438 * 8 6 5 10 10 H 1.09000 * 110.43769 * 32.45048 * 9 8 6 11 11 C 1.54991 * 110.48649 * 269.76536 * 9 8 6 12 12 C 1.55203 * 104.93034 * 243.81709 * 11 9 8 13 13 N 1.47091 * 103.52034 * 23.99296 * 12 11 9 14 14 C 1.45670 * 116.53679 * 197.56896 * 13 12 11 15 15 C 1.53619 * 107.80228 * 182.69221 * 14 13 12 16 16 C 1.52831 * 110.69641 * 302.62336 * 15 14 13 17 17 C 1.53664 * 110.60769 * 53.75128 * 16 15 14 18 18 C 1.48721 * 103.70847 * 317.76759 * 13 12 11 19 19 H 1.09004 * 110.33980 * 286.14498 * 18 13 12 20 20 N 1.31202 * 108.05331 * 359.72280 * 4 3 2 21 21 N 1.34972 * 126.07405 * 180.02562 * 2 1 3 22 22 C 1.46493 * 125.97304 * 359.97103 * 21 2 1 23 23 C 1.50706 * 109.47128 * 90.00463 * 22 21 2 24 24 H 1.08000 * 119.99302 * 359.97438 * 23 22 21 25 25 C 1.37871 * 120.00436 * 179.72498 * 23 22 21 26 26 N 1.31515 * 119.99684 * 359.97438 * 25 23 22 27 27 Si 1.86800 * 120.00405 * 180.02562 * 25 23 22 28 28 H 1.48496 * 109.46683 * 359.97438 * 27 25 23 29 29 H 1.48492 * 109.47426 * 119.99743 * 27 25 23 30 30 H 1.48501 * 109.46833 * 239.99986 * 27 25 23 31 31 H 1.09000 * 109.47177 * 269.97111 * 1 2 3 32 32 H 1.09003 * 109.47455 * 29.96867 * 1 2 3 33 33 H 1.09007 * 109.47280 * 149.97441 * 1 2 3 34 34 H 1.08002 * 126.06819 * 0.04941 * 3 2 1 35 35 H 0.97001 * 119.99602 * 180.02562 * 5 4 3 36 36 H 0.97001 * 119.99943 * 359.97438 * 8 6 5 37 37 H 1.08991 * 110.35147 * 2.67878 * 11 9 8 38 38 H 1.08994 * 110.34831 * 124.95605 * 11 9 8 39 39 H 1.08997 * 110.61026 * 265.48417 * 12 11 9 40 40 H 1.08999 * 110.74376 * 142.56753 * 12 11 9 41 41 H 1.09002 * 109.79540 * 302.26389 * 14 13 12 42 42 H 1.09003 * 109.79154 * 63.11467 * 14 13 12 43 43 H 1.08999 * 109.23531 * 62.93766 * 15 14 13 44 44 H 1.09001 * 109.23530 * 182.35166 * 15 14 13 45 45 H 1.09001 * 109.24657 * 174.03889 * 16 15 14 46 46 H 1.09000 * 109.24683 * 293.49653 * 16 15 14 47 47 H 1.08996 * 109.83030 * 184.35129 * 17 16 15 48 48 H 1.08998 * 109.83877 * 63.38964 * 17 16 15 49 49 H 1.09001 * 109.47786 * 330.00736 * 22 21 2 50 50 H 1.08998 * 109.47558 * 210.00599 * 22 21 2 51 51 H 0.97004 * 120.00247 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3032 1.0932 0.0000 4 6 3.6370 0.6546 -0.0006 5 7 4.7737 1.4752 -0.0003 6 6 4.6369 2.8160 0.0012 7 8 3.5276 3.3140 0.0018 8 7 5.7297 3.6049 0.0010 9 6 5.5810 5.0623 0.0020 10 1 4.6852 5.3532 0.5508 11 6 5.5308 5.6035 -1.4495 12 6 6.7930 6.4961 -1.5872 13 7 7.7052 5.9620 -0.5644 14 6 8.8140 6.8202 -0.1692 15 6 9.6679 6.0464 0.8466 16 6 8.8241 5.6185 2.0468 17 6 7.5817 4.8411 1.5849 18 6 6.8213 5.7277 0.6084 19 1 6.5521 6.6751 1.0753 20 7 3.6337 -0.6574 0.0051 21 7 2.3017 -1.0909 -0.0005 22 6 1.8502 -2.4845 -0.0005 23 6 1.6948 -2.9622 -1.4214 24 1 1.9105 -2.2943 -2.2422 25 6 1.2824 -4.2534 -1.6735 26 7 1.0250 -5.0684 -0.6739 27 14 1.0906 -4.8458 -3.4346 28 1 1.4398 -3.7448 -4.3679 29 1 1.9945 -6.0001 -3.6699 30 1 -0.3157 -5.2630 -3.6661 31 1 -0.3633 -0.0005 1.0277 32 1 -0.3634 0.8903 -0.5133 33 1 -0.3634 -0.8898 -0.5143 34 1 1.9720 2.1211 0.0008 35 1 5.6586 1.0780 -0.0011 36 1 6.6146 3.2077 0.0001 37 1 5.5693 4.7801 -2.1626 38 1 4.6290 6.1963 -1.6020 39 1 6.5506 7.5382 -1.3788 40 1 7.2299 6.3964 -2.5809 41 1 9.4161 7.0710 -1.0425 42 1 8.4301 7.7315 0.2894 43 1 10.0833 5.1607 0.3657 44 1 10.4827 6.6837 1.1902 45 1 9.4234 4.9834 2.6992 46 1 8.5087 6.5042 2.5983 47 1 6.9505 4.6093 2.4427 48 1 7.8855 3.9195 1.0884 49 1 0.8917 -2.5560 0.5136 50 1 2.5849 -3.1046 0.5130 51 1 0.7352 -5.9770 -0.8511 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272052119.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:50:54 Heat of formation + Delta-G solvation = 34.872061 kcal Electronic energy + Delta-G solvation = -30602.804645 eV Core-core repulsion = 26537.762782 eV Total energy + Delta-G solvation = -4065.041863 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.31360 -41.53569 -40.31560 -36.63983 -36.06175 -35.32466 -34.92551 -33.07437 -32.62165 -31.84043 -30.18624 -28.63521 -27.86938 -27.62079 -25.04220 -24.02901 -23.34150 -22.63833 -21.71499 -21.31469 -21.16535 -20.30005 -19.14294 -18.75997 -17.78597 -17.26491 -16.89341 -16.61105 -16.56564 -16.12516 -16.01632 -15.76431 -15.51489 -15.27820 -14.83343 -14.58375 -14.44750 -14.32086 -14.24447 -13.78028 -13.65676 -13.54362 -13.46658 -13.21946 -13.14546 -13.03346 -12.81437 -12.68318 -12.26154 -12.20939 -12.09707 -12.06492 -11.94545 -11.53981 -11.50468 -11.38686 -11.31837 -11.20655 -11.08326 -10.72800 -10.18089 -9.53499 -9.36141 -9.04574 -8.31468 -6.49283 1.05039 1.14883 1.37338 1.39056 1.52005 1.70148 2.11324 2.36250 2.42665 2.97545 2.99156 3.15480 3.45762 3.65105 3.88973 3.99859 4.04317 4.15210 4.18519 4.23589 4.26847 4.35888 4.48956 4.50540 4.57429 4.69160 4.74734 4.78916 4.81680 4.85149 4.89262 4.90568 4.95401 5.01025 5.04559 5.05725 5.09872 5.14649 5.18952 5.26217 5.27115 5.32411 5.49087 5.55063 5.56380 5.82589 5.86266 5.96196 6.01217 6.26489 6.29829 6.63570 6.78393 7.16273 7.21721 7.47187 8.74231 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.020019 B = 0.001979 C = 0.001966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.368972 B =14145.604242 C =14236.073198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.087 3.913 3 C -0.297 4.297 4 C 0.294 3.706 5 N -0.637 5.637 6 C 0.713 3.287 7 O -0.600 6.600 8 N -0.707 5.707 9 C 0.167 3.833 10 H 0.087 0.913 11 C -0.133 4.133 12 C 0.048 3.952 13 N -0.531 5.531 14 C 0.054 3.946 15 C -0.113 4.113 16 C -0.118 4.118 17 C -0.104 4.104 18 C 0.062 3.938 19 H 0.072 0.928 20 N -0.361 5.361 21 N -0.344 5.344 22 C 0.276 3.724 23 C -0.551 4.551 24 H 0.048 0.952 25 C 0.022 3.978 26 N -0.918 5.918 27 Si 0.972 3.028 28 H -0.275 1.275 29 H -0.274 1.274 30 H -0.267 1.267 31 H 0.092 0.908 32 H 0.101 0.899 33 H 0.067 0.933 34 H 0.166 0.834 35 H 0.420 0.580 36 H 0.411 0.589 37 H 0.064 0.936 38 H 0.078 0.922 39 H 0.052 0.948 40 H 0.085 0.915 41 H 0.080 0.920 42 H 0.038 0.962 43 H 0.064 0.936 44 H 0.077 0.923 45 H 0.070 0.930 46 H 0.061 0.939 47 H 0.067 0.933 48 H 0.071 0.929 49 H 0.052 0.948 50 H 0.024 0.976 51 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.780 26.167 3.175 30.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.044 4.044 3 C -0.328 4.328 4 C 0.038 3.962 5 N -0.288 5.288 6 C 0.413 3.587 7 O -0.478 6.478 8 N -0.364 5.364 9 C 0.062 3.938 10 H 0.105 0.895 11 C -0.173 4.173 12 C -0.079 4.079 13 N -0.256 5.256 14 C -0.074 4.074 15 C -0.150 4.150 16 C -0.156 4.156 17 C -0.142 4.142 18 C -0.047 4.047 19 H 0.089 0.911 20 N -0.192 5.192 21 N -0.127 5.127 22 C 0.157 3.843 23 C -0.589 4.589 24 H 0.067 0.933 25 C -0.179 4.179 26 N -0.556 5.556 27 Si 0.796 3.204 28 H -0.199 1.199 29 H -0.200 1.200 30 H -0.192 1.192 31 H 0.111 0.889 32 H 0.120 0.880 33 H 0.086 0.914 34 H 0.184 0.816 35 H 0.257 0.743 36 H 0.249 0.751 37 H 0.083 0.917 38 H 0.096 0.904 39 H 0.070 0.930 40 H 0.104 0.896 41 H 0.099 0.901 42 H 0.056 0.944 43 H 0.082 0.918 44 H 0.095 0.905 45 H 0.088 0.912 46 H 0.080 0.920 47 H 0.086 0.914 48 H 0.090 0.910 49 H 0.070 0.930 50 H 0.042 0.958 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 14.717 24.874 3.036 29.061 hybrid contribution -0.033 0.254 -0.551 0.607 sum 14.684 25.127 2.485 29.209 Atomic orbital electron populations 1.20490 0.85422 1.04313 1.04074 1.21738 0.96639 0.86452 0.99549 1.21398 0.89936 0.99847 1.21606 1.18944 0.88077 0.88871 1.00278 1.41399 1.06989 1.03888 1.76561 1.15784 0.85343 0.80012 0.77610 1.90829 1.25185 1.73835 1.57911 1.44951 1.06987 1.05978 1.78513 1.21418 0.98430 0.77476 0.96519 0.89494 1.23024 0.98209 0.99700 0.96328 1.22818 0.91842 0.96575 0.96702 1.63927 1.08802 1.45845 1.07067 1.22084 0.92590 0.93814 0.98912 1.21580 0.97761 1.00519 0.95189 1.21576 0.96187 1.00083 0.97721 1.21440 0.96622 0.98480 0.97685 1.22658 0.91218 0.98687 0.92112 0.91064 1.77162 1.00060 1.09787 1.32184 1.48752 1.01669 1.07438 1.54813 1.19230 0.94882 0.72483 0.97724 1.21466 1.47441 0.98219 0.91797 0.93347 1.25733 0.94021 0.95939 1.02207 1.70010 1.45344 1.07375 1.32896 0.85304 0.78481 0.78062 0.78601 1.19922 1.19958 1.19167 0.88909 0.88029 0.91436 0.81637 0.74345 0.75056 0.91677 0.90351 0.93015 0.89631 0.90145 0.94388 0.91752 0.90454 0.91162 0.91981 0.91417 0.91029 0.93039 0.95766 0.91749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.90 9.89 71.23 0.70 -2.20 16 2 C 0.09 3.74 6.92 41.38 0.29 4.02 16 3 C -0.30 -12.51 9.52 22.11 0.21 -12.29 16 4 C 0.29 12.26 8.11 133.32 1.08 13.35 16 5 N -0.64 -20.02 5.45 -321.24 -1.75 -21.77 16 6 C 0.71 20.78 8.53 179.05 1.53 22.30 16 7 O -0.60 -21.57 13.12 -3.99 -0.05 -21.62 16 8 N -0.71 -14.01 4.51 -454.14 -2.05 -16.06 16 9 C 0.17 2.94 3.30 45.76 0.15 3.09 16 10 H 0.09 1.80 7.55 -2.39 -0.02 1.78 16 11 C -0.13 -2.22 6.84 32.03 0.22 -2.00 16 12 C 0.05 0.61 6.71 87.02 0.58 1.20 16 13 N -0.53 -6.71 4.84 -864.16 -4.18 -10.90 16 14 C 0.05 0.54 5.87 86.74 0.51 1.05 16 15 C -0.11 -1.02 6.06 30.75 0.19 -0.83 16 16 C -0.12 -1.13 5.95 30.76 0.18 -0.94 16 17 C -0.10 -1.24 5.06 30.57 0.15 -1.09 16 18 C 0.06 0.81 2.42 44.40 0.11 0.91 16 19 H 0.07 0.87 7.98 -2.39 -0.02 0.85 16 20 N -0.36 -17.33 12.59 -54.44 -0.69 -18.02 16 21 N -0.34 -17.01 3.59 -338.45 -1.22 -18.23 16 22 C 0.28 14.81 5.81 85.64 0.50 15.30 16 23 C -0.55 -31.31 9.39 25.60 0.24 -31.06 16 24 H 0.05 2.86 7.81 -2.91 -0.02 2.83 16 25 C 0.02 1.21 5.46 84.65 0.46 1.67 16 26 N -0.92 -52.22 13.29 21.45 0.28 -51.94 16 27 Si 0.97 43.55 29.54 68.60 2.03 45.58 16 28 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 29 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 30 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 31 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 32 H 0.10 2.90 8.14 -2.39 -0.02 2.88 16 33 H 0.07 2.51 7.71 -2.38 -0.02 2.49 16 34 H 0.17 6.79 5.91 -2.91 -0.02 6.77 16 35 H 0.42 10.58 8.84 -92.71 -0.82 9.76 16 36 H 0.41 6.44 6.83 -92.71 -0.63 5.81 16 37 H 0.06 1.31 7.96 -2.39 -0.02 1.29 16 38 H 0.08 1.28 8.14 -2.39 -0.02 1.27 16 39 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 40 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 42 H 0.04 0.36 7.99 -2.39 -0.02 0.34 16 43 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 44 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 45 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 46 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 47 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 48 H 0.07 0.88 6.47 -2.39 -0.02 0.86 16 49 H 0.05 2.73 7.65 -2.39 -0.02 2.71 16 50 H 0.02 1.40 8.14 -2.39 -0.02 1.39 16 51 H 0.27 14.46 8.31 -92.71 -0.77 13.69 16 Total: -1.00 -70.06 402.80 -1.02 -71.08 By element: Atomic # 1 Polarization: 29.90 SS G_CDS: -0.50 Total: 29.40 kcal Atomic # 6 Polarization: 5.37 SS G_CDS: 7.11 Total: 12.48 kcal Atomic # 7 Polarization: -127.31 SS G_CDS: -9.60 Total: -136.91 kcal Atomic # 8 Polarization: -21.57 SS G_CDS: -0.05 Total: -21.62 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -70.06 -1.02 -71.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272052119.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.952 kcal (2) G-P(sol) polarization free energy of solvation -70.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds