Wall clock time and date at job start Wed Apr 1 2020 04:49:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35244 * 126.07047 * 2 1 4 4 C 1.40399 * 107.86538 * 179.90072 * 3 2 1 5 5 N 1.40197 * 125.97122 * 180.14575 * 4 3 2 6 6 C 1.34773 * 120.00030 * 0.23161 * 5 4 3 7 7 O 1.21585 * 120.00299 * 354.88071 * 6 5 4 8 8 N 1.34778 * 120.00049 * 174.88075 * 6 5 4 9 9 C 1.47076 * 120.88248 * 184.71134 * 8 6 5 10 10 C 1.53695 * 108.27581 * 128.75367 * 9 8 6 11 11 N 1.46903 * 109.25801 * 54.08267 * 10 9 8 12 12 C 1.46899 * 111.00243 * 172.60727 * 11 10 9 13 13 C 1.52994 * 109.47219 * 58.94382 * 12 11 10 14 14 C 1.53000 * 117.50382 * 243.46061 * 13 12 11 15 15 C 1.53000 * 117.49943 * 174.83365 * 13 12 11 16 16 C 1.46900 * 111.27023 * 296.75767 * 11 10 9 17 17 C 1.47078 * 120.87737 * 4.98962 * 8 6 5 18 18 N 1.31214 * 108.05367 * 0.36728 * 4 3 2 19 19 N 1.34962 * 126.06654 * 180.30904 * 2 1 3 20 20 C 1.46498 * 125.97950 * 359.94483 * 19 2 1 21 21 C 1.50698 * 109.47159 * 89.99916 * 20 19 2 22 22 H 1.08005 * 119.99706 * 359.97438 * 21 20 19 23 23 C 1.37875 * 120.00117 * 179.97438 * 21 20 19 24 24 N 1.31509 * 119.99981 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00076 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.47122 * 89.99982 * 25 23 21 27 27 H 1.48498 * 109.47109 * 209.99957 * 25 23 21 28 28 H 1.48500 * 109.47195 * 330.00031 * 25 23 21 29 29 H 1.08998 * 109.47335 * 269.69158 * 1 2 3 30 30 H 1.08994 * 109.47157 * 149.68658 * 1 2 3 31 31 H 1.09004 * 109.46702 * 29.69010 * 1 2 3 32 32 H 1.07998 * 126.06522 * 0.02562 * 3 2 1 33 33 H 0.96998 * 119.99872 * 180.23659 * 5 4 3 34 34 H 1.08996 * 109.62943 * 248.51975 * 9 8 6 35 35 H 1.08999 * 109.63035 * 9.10691 * 9 8 6 36 36 H 1.08995 * 109.64975 * 294.08466 * 10 9 8 37 37 H 1.09005 * 109.44364 * 173.96087 * 10 9 8 38 38 H 1.08998 * 109.46918 * 178.95325 * 12 11 10 39 39 H 1.09009 * 109.46731 * 298.94506 * 12 11 10 40 40 H 1.09005 * 115.54700 * 29.17559 * 13 12 11 41 41 H 1.08996 * 117.49612 * 0.02562 * 14 13 12 42 42 H 1.08999 * 117.49969 * 145.01938 * 14 13 12 43 43 H 1.08995 * 117.50242 * 214.97965 * 15 13 12 44 44 H 1.08997 * 117.49845 * 0.02562 * 15 13 12 45 45 H 1.08993 * 109.48950 * 303.14320 * 16 11 10 46 46 H 1.08998 * 109.51819 * 183.07425 * 16 11 10 47 47 H 1.08998 * 109.63270 * 350.89566 * 17 8 6 48 48 H 1.09007 * 109.63050 * 111.47769 * 17 8 6 49 49 H 1.09001 * 109.46958 * 210.00101 * 20 19 2 50 50 H 1.08998 * 109.47134 * 329.99929 * 20 19 2 51 51 H 0.97002 * 120.00347 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3034 1.0932 0.0000 4 6 3.6371 0.6545 0.0023 5 7 4.7738 1.4751 0.0060 6 6 4.6370 2.8159 0.0122 7 8 3.5320 3.3147 -0.0792 8 7 5.7252 3.6037 0.1199 9 6 5.5918 5.0641 0.2322 10 6 6.4111 5.5311 1.4458 11 7 7.7903 5.0421 1.3164 12 6 8.6506 5.6101 2.3630 13 6 8.0995 5.2294 3.7385 14 6 7.6230 6.3641 4.6475 15 6 8.9248 5.6253 4.9645 16 6 7.8391 3.5740 1.3341 17 6 7.0779 3.0264 0.1220 18 7 3.6336 -0.6576 -0.0043 19 7 2.3016 -1.0909 -0.0059 20 6 1.8500 -2.4846 -0.0123 21 6 1.6941 -2.9556 -1.4352 22 1 1.9094 -2.2838 -2.2530 23 6 1.2765 -4.2440 -1.6931 24 7 1.0139 -5.0618 -0.6972 25 14 1.0839 -4.8281 -3.4569 26 1 2.3649 -5.4140 -3.9271 27 1 0.0150 -5.8568 -3.5238 28 1 0.7186 -3.6778 -4.3222 29 1 -0.3634 -0.0055 1.0276 30 1 -0.3633 -0.8871 -0.5187 31 1 -0.3633 0.8928 -0.5090 32 1 1.9721 2.1211 0.0004 33 1 5.6587 1.0778 0.0039 34 1 5.9712 5.5372 -0.6735 35 1 4.5433 5.3262 0.3740 36 1 5.9694 5.1355 2.3604 37 1 6.4135 6.6204 1.4846 38 1 9.6616 5.2172 2.2550 39 1 8.6706 6.6958 2.2673 40 1 7.5542 4.2865 3.7820 41 1 7.7017 7.3818 4.2653 42 1 6.7639 6.1680 5.2891 43 1 8.9221 4.9432 5.8147 44 1 9.8601 6.1573 4.7911 45 1 7.3774 3.2058 2.2502 46 1 8.8769 3.2436 1.2915 47 1 7.0125 1.9405 0.1909 48 1 7.5975 3.3073 -0.7941 49 1 2.5851 -3.1070 0.4980 50 1 0.8918 -2.5583 0.5020 51 1 0.7205 -5.9684 -0.8786 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272089688.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:49:28 Heat of formation + Delta-G solvation = 78.077643 kcal Electronic energy + Delta-G solvation = -30447.012866 eV Core-core repulsion = 26383.844538 eV Total energy + Delta-G solvation = -4063.168328 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.38782 -41.38408 -39.84986 -37.78603 -36.41038 -35.49399 -35.07499 -33.07446 -32.61949 -31.99961 -29.64408 -28.45658 -27.86826 -25.91974 -25.08433 -24.70681 -23.34070 -23.21850 -22.13547 -21.30457 -21.14313 -19.99181 -18.92738 -18.74911 -17.82751 -17.27548 -17.06456 -16.88381 -16.38959 -16.20801 -16.09935 -15.84090 -15.73520 -15.50311 -14.98026 -14.87409 -14.67420 -14.34087 -13.96573 -13.86989 -13.72429 -13.56642 -13.55592 -13.14623 -12.95192 -12.84545 -12.71157 -12.69259 -12.43068 -12.37675 -12.31940 -12.23655 -12.10836 -12.09489 -11.58317 -11.36517 -11.27148 -11.07034 -10.82693 -10.73709 -9.95520 -9.57143 -9.27972 -9.05408 -8.32430 -6.50224 0.98618 1.08261 1.37876 1.38579 1.50166 1.62825 1.98063 2.33595 2.34878 2.76084 2.78154 2.96855 2.99581 3.68748 3.81564 3.89592 3.92726 4.00697 4.04948 4.09317 4.15728 4.22795 4.29856 4.40681 4.46536 4.53711 4.69413 4.74032 4.76258 4.76806 4.78335 4.83453 4.87175 4.87653 4.89269 4.96537 5.00779 5.01252 5.07439 5.14514 5.19687 5.23006 5.29670 5.50385 5.53954 5.69917 5.81431 5.95072 6.01513 6.06139 6.26931 6.57177 6.63878 7.06745 7.20655 7.34109 8.73231 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.019796 B = 0.001969 C = 0.001957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.117604 B =14216.295391 C =14306.883872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.089 3.911 3 C -0.299 4.299 4 C 0.292 3.708 5 N -0.638 5.638 6 C 0.713 3.287 7 O -0.599 6.599 8 N -0.619 5.619 9 C 0.133 3.867 10 C 0.051 3.949 11 N -0.531 5.531 12 C 0.091 3.909 13 C -0.198 4.198 14 C -0.180 4.180 15 C -0.171 4.171 16 C 0.043 3.957 17 C 0.108 3.892 18 N -0.360 5.360 19 N -0.343 5.343 20 C 0.276 3.724 21 C -0.552 4.552 22 H 0.049 0.951 23 C 0.023 3.977 24 N -0.917 5.917 25 Si 0.971 3.029 26 H -0.274 1.274 27 H -0.270 1.270 28 H -0.270 1.270 29 H 0.093 0.907 30 H 0.068 0.932 31 H 0.101 0.899 32 H 0.164 0.836 33 H 0.417 0.583 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.029 0.971 37 H 0.105 0.895 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.085 0.915 41 H 0.106 0.894 42 H 0.083 0.917 43 H 0.089 0.911 44 H 0.108 0.892 45 H 0.031 0.969 46 H 0.110 0.890 47 H 0.086 0.914 48 H 0.096 0.904 49 H 0.025 0.975 50 H 0.052 0.948 51 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.836 23.874 7.336 29.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.042 4.042 3 C -0.330 4.330 4 C 0.037 3.963 5 N -0.291 5.291 6 C 0.414 3.586 7 O -0.477 6.477 8 N -0.357 5.357 9 C 0.011 3.989 10 C -0.078 4.078 11 N -0.253 5.253 12 C -0.037 4.037 13 C -0.218 4.218 14 C -0.217 4.217 15 C -0.209 4.209 16 C -0.086 4.086 17 C -0.014 4.014 18 N -0.190 5.190 19 N -0.125 5.125 20 C 0.157 3.843 21 C -0.591 4.591 22 H 0.067 0.933 23 C -0.178 4.178 24 N -0.556 5.556 25 Si 0.795 3.205 26 H -0.200 1.200 27 H -0.195 1.195 28 H -0.195 1.195 29 H 0.111 0.889 30 H 0.087 0.913 31 H 0.120 0.880 32 H 0.182 0.818 33 H 0.257 0.743 34 H 0.105 0.895 35 H 0.101 0.899 36 H 0.047 0.953 37 H 0.123 0.877 38 H 0.108 0.892 39 H 0.107 0.893 40 H 0.103 0.897 41 H 0.124 0.876 42 H 0.102 0.898 43 H 0.107 0.893 44 H 0.126 0.874 45 H 0.049 0.951 46 H 0.128 0.872 47 H 0.104 0.896 48 H 0.114 0.886 49 H 0.043 0.957 50 H 0.070 0.930 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 15.872 23.067 6.867 28.830 hybrid contribution -0.503 -0.730 0.242 0.919 sum 15.369 22.337 7.109 28.030 Atomic orbital electron populations 1.20497 0.85328 1.04373 1.04104 1.21730 0.96662 0.86389 0.99410 1.21379 0.89984 0.99847 1.21742 1.18954 0.88020 0.88941 1.00415 1.41588 1.07011 1.03909 1.76634 1.15706 0.84889 0.80193 0.77828 1.90822 1.25268 1.73709 1.57892 1.47369 1.04554 1.07396 1.76364 1.21838 1.01159 0.76685 0.99265 1.22493 0.88059 1.01431 0.95783 1.62227 1.09237 1.07224 1.46662 1.21892 0.96451 1.00601 0.84708 1.23059 1.05266 0.99420 0.94035 1.23064 0.98199 0.97215 1.03207 1.22964 0.95859 1.03579 0.98448 1.22494 1.01815 0.88186 0.96108 1.22033 0.80926 0.98014 1.00464 1.77158 1.00126 1.09609 1.32140 1.48768 1.01611 1.07484 1.54663 1.19242 0.94902 0.72373 0.97768 1.21434 1.47516 0.98352 0.91767 0.93306 1.25728 0.93966 0.95901 1.02249 1.69998 1.45107 1.07385 1.33071 0.85361 0.78285 0.78178 0.78700 1.19966 1.19475 1.19494 0.88857 0.91350 0.88034 0.81821 0.74328 0.89460 0.89896 0.95286 0.87685 0.89159 0.89313 0.89700 0.87612 0.89815 0.89272 0.87354 0.95124 0.87218 0.89632 0.88573 0.95723 0.92998 0.91728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.92 9.89 71.24 0.70 -2.22 16 2 C 0.09 3.85 6.92 41.39 0.29 4.14 16 3 C -0.30 -12.79 9.52 22.11 0.21 -12.58 16 4 C 0.29 12.40 8.11 133.31 1.08 13.48 16 5 N -0.64 -20.93 5.37 -321.24 -1.72 -22.66 16 6 C 0.71 22.19 8.27 179.06 1.48 23.67 16 7 O -0.60 -22.66 12.97 -3.98 -0.05 -22.71 16 8 N -0.62 -13.47 3.00 -835.05 -2.51 -15.98 16 9 C 0.13 2.40 6.61 86.50 0.57 2.97 16 10 C 0.05 0.71 5.18 86.54 0.45 1.16 16 11 N -0.53 -6.37 4.83 -894.31 -4.32 -10.69 16 12 C 0.09 0.84 5.62 86.30 0.49 1.33 16 13 C -0.20 -2.26 4.30 -10.80 -0.05 -2.31 16 14 C -0.18 -1.93 10.18 30.60 0.31 -1.62 16 15 C -0.17 -1.68 10.25 30.60 0.31 -1.37 16 16 C 0.04 0.53 5.26 86.39 0.45 0.99 16 17 C 0.11 1.62 6.59 86.35 0.57 2.19 16 18 N -0.36 -17.34 12.59 -54.43 -0.69 -18.02 16 19 N -0.34 -16.98 3.59 -338.45 -1.22 -18.20 16 20 C 0.28 14.80 5.81 85.63 0.50 15.30 16 21 C -0.55 -31.34 9.39 25.60 0.24 -31.10 16 22 H 0.05 2.87 7.81 -2.91 -0.02 2.85 16 23 C 0.02 1.24 5.46 84.65 0.46 1.71 16 24 N -0.92 -52.09 13.29 21.45 0.28 -51.80 16 25 Si 0.97 43.44 29.54 68.60 2.03 45.47 16 26 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 27 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 28 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 29 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 30 H 0.07 2.55 7.71 -2.39 -0.02 2.54 16 31 H 0.10 2.93 8.14 -2.38 -0.02 2.91 16 32 H 0.16 6.87 5.93 -2.91 -0.02 6.85 16 33 H 0.42 11.14 6.32 -92.71 -0.59 10.55 16 34 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.08 1.79 7.09 -2.39 -0.02 1.77 16 36 H 0.03 0.51 7.25 -2.39 -0.02 0.49 16 37 H 0.10 1.09 8.11 -2.38 -0.02 1.07 16 38 H 0.09 0.69 8.06 -2.39 -0.02 0.67 16 39 H 0.09 0.69 7.88 -2.38 -0.02 0.67 16 40 H 0.08 1.31 6.32 -2.38 -0.02 1.30 16 41 H 0.11 0.90 8.03 -2.39 -0.02 0.88 16 42 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.09 0.93 8.14 -2.39 -0.02 0.92 16 44 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 45 H 0.03 0.48 6.55 -2.39 -0.02 0.46 16 46 H 0.11 0.95 8.05 -2.39 -0.02 0.93 16 47 H 0.09 1.21 5.63 -2.39 -0.01 1.20 16 48 H 0.10 1.22 8.14 -2.38 -0.02 1.20 16 49 H 0.02 1.43 8.14 -2.39 -0.02 1.41 16 50 H 0.05 2.75 7.65 -2.39 -0.02 2.73 16 51 H 0.27 14.48 8.31 -92.71 -0.77 13.71 16 Total: -1.00 -71.44 405.69 0.24 -71.20 By element: Atomic # 1 Polarization: 27.29 SS G_CDS: 0.36 Total: 27.65 kcal Atomic # 6 Polarization: 7.67 SS G_CDS: 8.07 Total: 15.74 kcal Atomic # 7 Polarization: -127.18 SS G_CDS: -10.17 Total: -137.35 kcal Atomic # 8 Polarization: -22.66 SS G_CDS: -0.05 Total: -22.71 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Total: -71.44 0.24 -71.20 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272089688.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.276 kcal (2) G-P(sol) polarization free energy of solvation -71.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds