Wall clock time and date at job start Wed Apr 1 2020 04:49:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35245 * 126.07070 * 2 1 4 4 C 1.40408 * 107.86710 * 179.90177 * 3 2 1 5 5 N 1.40193 * 125.97046 * 180.14424 * 4 3 2 6 6 C 1.34769 * 120.00235 * 0.23122 * 5 4 3 7 7 O 1.21590 * 120.00338 * 354.78683 * 6 5 4 8 8 N 1.34777 * 119.99977 * 174.78522 * 6 5 4 9 9 C 1.47081 * 120.88148 * 184.72078 * 8 6 5 10 10 C 1.53696 * 108.28005 * 128.75660 * 9 8 6 11 11 N 1.46897 * 109.25548 * 54.08101 * 10 9 8 12 12 C 1.46901 * 110.99800 * 172.61367 * 11 10 9 13 13 C 1.53773 * 113.61778 * 38.43164 * 12 11 10 14 14 C 1.53954 * 87.02325 * 220.05061 * 13 12 11 15 15 C 1.53780 * 87.10824 * 25.36576 * 14 13 12 16 16 C 1.46901 * 111.26825 * 296.75823 * 11 10 9 17 17 C 1.47079 * 120.88054 * 4.99917 * 8 6 5 18 18 N 1.31212 * 108.05294 * 0.36389 * 4 3 2 19 19 N 1.34964 * 126.06936 * 180.30721 * 2 1 3 20 20 C 1.46501 * 125.97720 * 359.94428 * 19 2 1 21 21 C 1.50699 * 109.47041 * 90.00361 * 20 19 2 22 22 H 1.07999 * 119.99717 * 359.97438 * 21 20 19 23 23 C 1.37876 * 119.99700 * 180.02562 * 21 20 19 24 24 N 1.31518 * 119.99673 * 179.97438 * 23 21 20 25 25 Si 1.86795 * 120.00504 * 359.97438 * 23 21 20 26 26 H 1.48498 * 109.47111 * 89.99781 * 25 23 21 27 27 H 1.48502 * 109.47255 * 210.00502 * 25 23 21 28 28 H 1.48505 * 109.46956 * 330.00309 * 25 23 21 29 29 H 1.08997 * 109.47439 * 269.69119 * 1 2 3 30 30 H 1.09001 * 109.47204 * 149.69014 * 1 2 3 31 31 H 1.09002 * 109.47169 * 29.69077 * 1 2 3 32 32 H 1.07995 * 126.06469 * 0.02562 * 3 2 1 33 33 H 0.97008 * 119.99430 * 180.23404 * 5 4 3 34 34 H 1.09007 * 109.62912 * 248.52509 * 9 8 6 35 35 H 1.09002 * 109.62926 * 9.10014 * 9 8 6 36 36 H 1.08999 * 109.64202 * 294.07577 * 10 9 8 37 37 H 1.09003 * 109.44029 * 173.95955 * 10 9 8 38 38 H 1.08998 * 112.85029 * 169.63833 * 12 11 10 39 39 H 1.09006 * 113.61832 * 334.57383 * 13 12 11 40 40 H 1.08998 * 113.61265 * 105.47147 * 13 12 11 41 41 H 1.09000 * 113.53747 * 270.81349 * 14 13 12 42 42 H 1.09000 * 113.66255 * 139.92813 * 14 13 12 43 43 H 1.09006 * 113.61293 * 220.08834 * 15 14 13 44 44 H 1.09002 * 113.61712 * 89.18558 * 15 14 13 45 45 H 1.09004 * 109.49122 * 303.14682 * 16 11 10 46 46 H 1.08997 * 109.51537 * 183.08198 * 16 11 10 47 47 H 1.09001 * 109.62880 * 350.89118 * 17 8 6 48 48 H 1.08999 * 109.63125 * 111.47746 * 17 8 6 49 49 H 1.09002 * 109.47119 * 210.00102 * 20 19 2 50 50 H 1.09000 * 109.47246 * 330.00131 * 20 19 2 51 51 H 0.96993 * 119.99861 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3033 1.0932 0.0000 4 6 3.6371 0.6546 0.0023 5 7 4.7737 1.4751 0.0059 6 6 4.6370 2.8159 0.0122 7 8 3.5321 3.3148 -0.0810 8 7 5.7250 3.6037 0.1217 9 6 5.5913 5.0641 0.2342 10 6 6.4088 5.5308 1.4492 11 7 7.7882 5.0419 1.3217 12 6 8.6468 5.6096 2.3698 13 6 7.9532 5.7288 3.7370 14 6 8.6609 7.0877 3.8877 15 6 8.7069 7.1462 2.3517 16 6 7.8369 3.5738 1.3391 17 6 7.0777 3.0264 0.1258 18 7 3.6336 -0.6576 -0.0043 19 7 2.3016 -1.0909 -0.0058 20 6 1.8500 -2.4846 -0.0122 21 6 1.6941 -2.9556 -1.4351 22 1 1.9095 -2.2839 -2.2529 23 6 1.2756 -4.2438 -1.6929 24 7 1.1391 -4.6548 -2.9347 25 14 0.9025 -5.4054 -0.2784 26 1 -0.5281 -5.2812 0.0999 27 1 1.1844 -6.8020 -0.6971 28 1 1.7546 -5.0564 0.8867 29 1 -0.3634 -0.0055 1.0276 30 1 -0.3634 -0.8872 -0.5186 31 1 -0.3633 0.8928 -0.5090 32 1 1.9720 2.1211 0.0004 33 1 5.6587 1.0778 0.0038 34 1 5.9721 5.5375 -0.6708 35 1 4.5426 5.3261 0.3743 36 1 5.9655 5.1351 2.3630 37 1 6.4111 6.6202 1.4881 38 1 9.6269 5.1350 2.4172 39 1 6.8679 5.8067 3.6708 40 1 8.2816 4.9820 4.4598 41 1 9.6447 7.0171 4.3516 42 1 8.0350 7.8597 4.3354 43 1 9.6430 7.5420 1.9576 44 1 7.8281 7.6123 1.9059 45 1 7.3738 3.2054 2.2545 46 1 8.8748 3.2435 1.2982 47 1 7.0122 1.9405 0.1943 48 1 7.5987 3.3076 -0.7894 49 1 2.5851 -3.1070 0.4981 50 1 0.8918 -2.5584 0.5020 51 1 0.8450 -5.5611 -3.1161 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272157069.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:49:24 Heat of formation + Delta-G solvation = 103.983549 kcal Electronic energy + Delta-G solvation = -30594.826574 eV Core-core repulsion = 26532.781610 eV Total energy + Delta-G solvation = -4062.044964 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.06476 -40.46530 -39.54938 -37.08349 -34.95821 -33.86011 -33.20695 -31.75380 -31.18882 -31.00481 -27.98397 -26.91589 -26.36545 -26.12017 -24.32615 -24.21299 -22.76634 -21.97635 -20.70476 -19.80505 -19.44000 -18.82327 -17.87546 -17.10044 -16.58374 -16.48405 -16.04388 -15.71699 -15.58452 -15.08646 -15.00680 -14.72995 -14.53777 -14.27291 -13.91883 -13.47279 -13.23451 -13.20809 -13.05051 -12.82981 -12.56354 -12.37738 -12.33390 -12.22997 -12.01464 -11.94011 -11.64782 -11.53060 -11.45604 -11.16352 -11.11623 -10.95505 -10.80134 -10.66735 -10.56884 -10.03119 -9.94558 -9.69354 -9.55628 -9.02335 -8.77727 -8.55953 -7.95939 -7.41529 -6.25324 -4.28339 2.27000 2.58465 3.03921 3.14467 3.21448 3.23719 3.32344 3.42359 3.79145 3.99109 4.14794 4.20444 4.22206 4.39104 4.43027 4.53511 4.65226 4.73949 4.85215 5.02600 5.04027 5.07001 5.18992 5.25252 5.30690 5.32458 5.36470 5.45345 5.47925 5.52681 5.58034 5.64264 5.66019 5.74238 5.89178 5.92443 6.04834 6.07935 6.27715 6.39123 6.49413 6.49886 6.61992 6.62490 6.65906 6.83230 6.96930 7.30245 7.47436 7.83517 7.89241 8.32911 8.55041 8.61775 8.80874 9.29897 10.87174 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.023791 B = 0.001964 C = 0.001924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.636978 B =14252.577096 C =14545.770675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.094 3.906 3 C -0.285 4.285 4 C 0.286 3.714 5 N -0.644 5.644 6 C 0.718 3.282 7 O -0.564 6.564 8 N -0.629 5.629 9 C 0.137 3.863 10 C 0.036 3.964 11 N -0.526 5.526 12 C 0.065 3.935 13 C -0.182 4.182 14 C -0.140 4.140 15 C -0.132 4.132 16 C 0.042 3.958 17 C 0.113 3.887 18 N -0.322 5.322 19 N -0.318 5.318 20 C 0.232 3.768 21 C -0.540 4.540 22 H 0.081 0.919 23 C 0.078 3.922 24 N -0.886 5.886 25 Si 0.873 3.127 26 H -0.271 1.271 27 H -0.280 1.280 28 H -0.264 1.264 29 H 0.070 0.930 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.161 0.839 33 H 0.405 0.595 34 H 0.074 0.926 35 H 0.099 0.901 36 H 0.045 0.955 37 H 0.090 0.910 38 H 0.104 0.896 39 H 0.088 0.912 40 H 0.065 0.935 41 H 0.080 0.920 42 H 0.068 0.932 43 H 0.070 0.930 44 H 0.086 0.914 45 H 0.042 0.958 46 H 0.088 0.912 47 H 0.082 0.918 48 H 0.081 0.919 49 H 0.049 0.951 50 H 0.045 0.955 51 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.440 22.291 12.556 29.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.036 4.036 3 C -0.316 4.316 4 C 0.032 3.968 5 N -0.296 5.296 6 C 0.419 3.581 7 O -0.439 6.439 8 N -0.368 5.368 9 C 0.014 3.986 10 C -0.092 4.092 11 N -0.249 5.249 12 C -0.044 4.044 13 C -0.221 4.221 14 C -0.178 4.178 15 C -0.170 4.170 16 C -0.087 4.087 17 C -0.011 4.011 18 N -0.152 5.152 19 N -0.100 5.100 20 C 0.113 3.887 21 C -0.579 4.579 22 H 0.099 0.901 23 C -0.126 4.126 24 N -0.523 5.523 25 Si 0.699 3.301 26 H -0.196 1.196 27 H -0.205 1.205 28 H -0.188 1.188 29 H 0.089 0.911 30 H 0.101 0.899 31 H 0.096 0.904 32 H 0.179 0.821 33 H 0.242 0.758 34 H 0.092 0.908 35 H 0.117 0.883 36 H 0.064 0.936 37 H 0.108 0.892 38 H 0.122 0.878 39 H 0.106 0.894 40 H 0.084 0.916 41 H 0.098 0.902 42 H 0.087 0.913 43 H 0.089 0.911 44 H 0.104 0.896 45 H 0.060 0.940 46 H 0.106 0.894 47 H 0.100 0.900 48 H 0.099 0.901 49 H 0.067 0.933 50 H 0.063 0.937 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 14.433 21.459 11.899 28.467 hybrid contribution -0.255 -0.669 1.316 1.498 sum 14.177 20.791 13.215 28.423 Atomic orbital electron populations 1.20399 0.87868 1.04187 1.02401 1.21049 0.94890 0.86961 1.00738 1.21244 0.89679 0.99843 1.20867 1.18670 0.86668 0.89208 1.02207 1.41587 1.07543 1.03816 1.76701 1.15509 0.84263 0.80437 0.77938 1.90863 1.23545 1.73262 1.56271 1.47259 1.04523 1.06974 1.78060 1.21678 1.01409 0.77898 0.97659 1.22736 0.88100 1.00780 0.97634 1.61913 1.09175 1.07148 1.46627 1.23261 0.96936 0.95810 0.88404 1.23716 1.01198 0.98253 0.98972 1.22737 1.00902 0.97489 0.96704 1.23085 1.02745 0.95376 0.95817 1.22443 1.00955 0.87820 0.97438 1.21780 0.82513 0.97684 0.99079 1.77242 0.99435 1.08427 1.30086 1.48480 1.01159 1.06945 1.53459 1.19975 0.95236 0.73814 0.99659 1.21192 1.47255 0.99018 0.90397 0.90088 1.24814 0.94525 0.97465 0.95766 1.69876 1.45677 1.18307 1.18469 0.86904 0.79424 0.80999 0.82821 1.19624 1.20525 1.18820 0.91138 0.89866 0.90355 0.82115 0.75786 0.90789 0.88284 0.93650 0.89230 0.87837 0.89395 0.91612 0.90171 0.91285 0.91092 0.89584 0.94016 0.89396 0.90010 0.90086 0.93274 0.93696 0.92144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.53 9.89 36.00 0.36 -1.17 16 2 C 0.09 1.99 6.92 -82.28 -0.57 1.42 16 3 C -0.29 -5.95 9.52 -39.83 -0.38 -6.33 16 4 C 0.29 5.90 8.11 -154.36 -1.25 4.65 16 5 N -0.64 -10.43 5.36 -15.51 -0.08 -10.51 16 6 C 0.72 11.09 8.27 -86.92 -0.72 10.37 16 7 O -0.56 -10.47 12.97 5.29 0.07 -10.40 16 8 N -0.63 -7.05 3.00 -177.91 -0.53 -7.59 16 9 C 0.14 1.29 6.61 -3.36 -0.02 1.27 16 10 C 0.04 0.27 4.48 -3.46 -0.02 0.26 16 11 N -0.53 -3.77 4.75 -225.08 -1.07 -4.84 16 12 C 0.06 0.39 3.84 -66.90 -0.26 0.13 16 13 C -0.18 -1.11 7.37 -25.83 -0.19 -1.30 16 14 C -0.14 -0.72 8.09 -25.83 -0.21 -0.92 16 15 C -0.13 -0.71 7.58 -25.92 -0.20 -0.91 16 16 C 0.04 0.30 5.61 -3.70 -0.02 0.28 16 17 C 0.11 0.94 6.59 -3.60 -0.02 0.91 16 18 N -0.32 -7.40 12.59 31.44 0.40 -7.01 16 19 N -0.32 -7.46 3.59 -58.33 -0.21 -7.67 16 20 C 0.23 5.62 4.88 -5.19 -0.03 5.60 16 21 C -0.54 -15.20 9.94 -34.44 -0.34 -15.55 16 22 H 0.08 2.59 8.06 -52.49 -0.42 2.16 16 23 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 24 N -0.89 -26.39 13.96 55.43 0.77 -25.62 16 25 Si 0.87 20.17 27.47 -169.99 -4.67 15.50 16 26 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16 27 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 28 H -0.26 -5.84 6.54 56.52 0.37 -5.47 16 29 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.08 1.50 7.71 -51.93 -0.40 1.10 16 31 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.16 3.30 5.93 -52.49 -0.31 2.99 16 33 H 0.40 5.38 6.32 -40.82 -0.26 5.12 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.10 1.05 7.09 -51.93 -0.37 0.69 16 36 H 0.05 0.39 6.46 -51.93 -0.34 0.06 16 37 H 0.09 0.56 6.05 -51.93 -0.31 0.24 16 38 H 0.10 0.58 8.04 -51.93 -0.42 0.16 16 39 H 0.09 0.60 5.65 -51.93 -0.29 0.31 16 40 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 44 H 0.09 0.47 6.20 -51.93 -0.32 0.15 16 45 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 46 H 0.09 0.49 8.04 -51.93 -0.42 0.07 16 47 H 0.08 0.62 5.64 -51.93 -0.29 0.33 16 48 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 49 H 0.05 1.20 7.20 -51.93 -0.37 0.82 16 50 H 0.05 1.00 7.07 -51.93 -0.37 0.63 16 51 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 394.67 15.07 5.95 5.95 Total: -1.00 -33.95 394.67 -11.21 -45.16 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: -7.87 Total: 6.22 kcal Atomic # 6 Polarization: 4.78 SS G_CDS: -3.96 Total: 0.82 kcal Atomic # 7 Polarization: -62.51 SS G_CDS: -0.73 Total: -63.24 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: 0.07 Total: -10.40 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -4.67 Total: 15.50 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -33.95 -11.21 -45.16 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272157069.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.146 kcal (2) G-P(sol) polarization free energy of solvation -33.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.162 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds