Wall clock time and date at job start Wed Apr 1 2020 04:49:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35245 * 126.07070 * 2 1 4 4 C 1.40408 * 107.86710 * 179.90177 * 3 2 1 5 5 N 1.40193 * 125.97046 * 180.14424 * 4 3 2 6 6 C 1.34769 * 120.00235 * 0.23122 * 5 4 3 7 7 O 1.21590 * 120.00338 * 354.78683 * 6 5 4 8 8 N 1.34777 * 119.99977 * 174.78522 * 6 5 4 9 9 C 1.47081 * 120.88148 * 184.72078 * 8 6 5 10 10 C 1.53696 * 108.28005 * 128.75660 * 9 8 6 11 11 N 1.46897 * 109.25548 * 54.08101 * 10 9 8 12 12 C 1.46901 * 110.99800 * 172.61367 * 11 10 9 13 13 C 1.53773 * 113.61778 * 38.43164 * 12 11 10 14 14 C 1.53954 * 87.02325 * 220.05061 * 13 12 11 15 15 C 1.53780 * 87.10824 * 25.36576 * 14 13 12 16 16 C 1.46901 * 111.26825 * 296.75823 * 11 10 9 17 17 C 1.47079 * 120.88054 * 4.99917 * 8 6 5 18 18 N 1.31212 * 108.05294 * 0.36389 * 4 3 2 19 19 N 1.34964 * 126.06936 * 180.30721 * 2 1 3 20 20 C 1.46501 * 125.97720 * 359.94428 * 19 2 1 21 21 C 1.50699 * 109.47041 * 90.00361 * 20 19 2 22 22 H 1.07999 * 119.99717 * 359.97438 * 21 20 19 23 23 C 1.37876 * 119.99700 * 180.02562 * 21 20 19 24 24 N 1.31518 * 119.99673 * 179.97438 * 23 21 20 25 25 Si 1.86795 * 120.00504 * 359.97438 * 23 21 20 26 26 H 1.48498 * 109.47111 * 89.99781 * 25 23 21 27 27 H 1.48502 * 109.47255 * 210.00502 * 25 23 21 28 28 H 1.48505 * 109.46956 * 330.00309 * 25 23 21 29 29 H 1.08997 * 109.47439 * 269.69119 * 1 2 3 30 30 H 1.09001 * 109.47204 * 149.69014 * 1 2 3 31 31 H 1.09002 * 109.47169 * 29.69077 * 1 2 3 32 32 H 1.07995 * 126.06469 * 0.02562 * 3 2 1 33 33 H 0.97008 * 119.99430 * 180.23404 * 5 4 3 34 34 H 1.09007 * 109.62912 * 248.52509 * 9 8 6 35 35 H 1.09002 * 109.62926 * 9.10014 * 9 8 6 36 36 H 1.08999 * 109.64202 * 294.07577 * 10 9 8 37 37 H 1.09003 * 109.44029 * 173.95955 * 10 9 8 38 38 H 1.08998 * 112.85029 * 169.63833 * 12 11 10 39 39 H 1.09006 * 113.61832 * 334.57383 * 13 12 11 40 40 H 1.08998 * 113.61265 * 105.47147 * 13 12 11 41 41 H 1.09000 * 113.53747 * 270.81349 * 14 13 12 42 42 H 1.09000 * 113.66255 * 139.92813 * 14 13 12 43 43 H 1.09006 * 113.61293 * 220.08834 * 15 14 13 44 44 H 1.09002 * 113.61712 * 89.18558 * 15 14 13 45 45 H 1.09004 * 109.49122 * 303.14682 * 16 11 10 46 46 H 1.08997 * 109.51537 * 183.08198 * 16 11 10 47 47 H 1.09001 * 109.62880 * 350.89118 * 17 8 6 48 48 H 1.08999 * 109.63125 * 111.47746 * 17 8 6 49 49 H 1.09002 * 109.47119 * 210.00102 * 20 19 2 50 50 H 1.09000 * 109.47246 * 330.00131 * 20 19 2 51 51 H 0.96993 * 119.99861 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3033 1.0932 0.0000 4 6 3.6371 0.6546 0.0023 5 7 4.7737 1.4751 0.0059 6 6 4.6370 2.8159 0.0122 7 8 3.5321 3.3148 -0.0810 8 7 5.7250 3.6037 0.1217 9 6 5.5913 5.0641 0.2342 10 6 6.4088 5.5308 1.4492 11 7 7.7882 5.0419 1.3217 12 6 8.6468 5.6096 2.3698 13 6 7.9532 5.7288 3.7370 14 6 8.6609 7.0877 3.8877 15 6 8.7069 7.1462 2.3517 16 6 7.8369 3.5738 1.3391 17 6 7.0777 3.0264 0.1258 18 7 3.6336 -0.6576 -0.0043 19 7 2.3016 -1.0909 -0.0058 20 6 1.8500 -2.4846 -0.0122 21 6 1.6941 -2.9556 -1.4351 22 1 1.9095 -2.2839 -2.2529 23 6 1.2756 -4.2438 -1.6929 24 7 1.1391 -4.6548 -2.9347 25 14 0.9025 -5.4054 -0.2784 26 1 -0.5281 -5.2812 0.0999 27 1 1.1844 -6.8020 -0.6971 28 1 1.7546 -5.0564 0.8867 29 1 -0.3634 -0.0055 1.0276 30 1 -0.3634 -0.8872 -0.5186 31 1 -0.3633 0.8928 -0.5090 32 1 1.9720 2.1211 0.0004 33 1 5.6587 1.0778 0.0038 34 1 5.9721 5.5375 -0.6708 35 1 4.5426 5.3261 0.3743 36 1 5.9655 5.1351 2.3630 37 1 6.4111 6.6202 1.4881 38 1 9.6269 5.1350 2.4172 39 1 6.8679 5.8067 3.6708 40 1 8.2816 4.9820 4.4598 41 1 9.6447 7.0171 4.3516 42 1 8.0350 7.8597 4.3354 43 1 9.6430 7.5420 1.9576 44 1 7.8281 7.6123 1.9059 45 1 7.3738 3.2054 2.2545 46 1 8.8748 3.2435 1.2982 47 1 7.0122 1.9405 0.1943 48 1 7.5987 3.3076 -0.7894 49 1 2.5851 -3.1070 0.4981 50 1 0.8918 -2.5584 0.5020 51 1 0.8450 -5.5611 -3.1161 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272157069.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:49:23 Heat of formation + Delta-G solvation = 81.582509 kcal Electronic energy + Delta-G solvation = -30595.797956 eV Core-core repulsion = 26532.781610 eV Total energy + Delta-G solvation = -4063.016346 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.42310 -41.51891 -40.48494 -37.90777 -36.43182 -35.31747 -34.52776 -33.18363 -32.79915 -32.04695 -29.24185 -28.30307 -27.88018 -26.57035 -25.22604 -24.82681 -24.37003 -23.09778 -21.82562 -21.29011 -20.48182 -19.62650 -19.22643 -18.95654 -17.82460 -17.27007 -17.21806 -16.90467 -16.55610 -16.33830 -16.09991 -15.67189 -15.59725 -15.47712 -15.26910 -14.88825 -14.47371 -14.43465 -13.92763 -13.79093 -13.74285 -13.64635 -13.56975 -13.43399 -13.24143 -12.86559 -12.80823 -12.58652 -12.55125 -12.30644 -12.26372 -12.07795 -11.83922 -11.67075 -11.60172 -11.44697 -11.38935 -11.22053 -11.02248 -10.88834 -9.94755 -9.58733 -9.22039 -9.02689 -8.39868 -6.51112 0.93982 1.05879 1.35409 1.38274 1.48277 1.60295 1.94609 2.27236 2.31765 2.73340 2.83575 2.92290 3.68330 3.71677 3.77943 3.82860 3.94171 3.96266 4.04937 4.07529 4.14366 4.19816 4.38375 4.40420 4.47071 4.54915 4.65545 4.71628 4.74815 4.76004 4.77483 4.81499 4.83806 4.86978 4.91031 4.99866 5.02554 5.07401 5.11667 5.14496 5.15382 5.22409 5.23834 5.45907 5.50182 5.68607 5.87646 6.00531 6.04930 6.11141 6.37519 6.51709 6.56558 7.02356 7.12779 7.32391 8.76803 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.023791 B = 0.001964 C = 0.001924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.636978 B =14252.577096 C =14545.770675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.091 3.909 3 C -0.298 4.298 4 C 0.294 3.706 5 N -0.638 5.638 6 C 0.713 3.287 7 O -0.599 6.599 8 N -0.619 5.619 9 C 0.134 3.866 10 C 0.046 3.954 11 N -0.528 5.528 12 C 0.063 3.937 13 C -0.185 4.185 14 C -0.135 4.135 15 C -0.130 4.130 16 C 0.046 3.954 17 C 0.108 3.892 18 N -0.357 5.357 19 N -0.343 5.343 20 C 0.242 3.758 21 C -0.550 4.550 22 H 0.023 0.977 23 C 0.021 3.979 24 N -0.937 5.937 25 Si 0.952 3.048 26 H -0.250 1.250 27 H -0.278 1.278 28 H -0.244 1.244 29 H 0.102 0.898 30 H 0.068 0.932 31 H 0.097 0.903 32 H 0.165 0.835 33 H 0.417 0.583 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.034 0.966 37 H 0.106 0.894 38 H 0.113 0.887 39 H 0.078 0.922 40 H 0.062 0.938 41 H 0.088 0.912 42 H 0.070 0.930 43 H 0.077 0.923 44 H 0.084 0.916 45 H 0.030 0.970 46 H 0.110 0.890 47 H 0.087 0.913 48 H 0.094 0.906 49 H 0.050 0.950 50 H 0.073 0.927 51 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.316 22.990 14.723 31.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.039 4.039 3 C -0.329 4.329 4 C 0.038 3.962 5 N -0.291 5.291 6 C 0.414 3.586 7 O -0.477 6.477 8 N -0.357 5.357 9 C 0.011 3.989 10 C -0.083 4.083 11 N -0.250 5.250 12 C -0.045 4.045 13 C -0.224 4.224 14 C -0.173 4.173 15 C -0.167 4.167 16 C -0.082 4.082 17 C -0.014 4.014 18 N -0.187 5.187 19 N -0.125 5.125 20 C 0.122 3.878 21 C -0.589 4.589 22 H 0.041 0.959 23 C -0.179 4.179 24 N -0.575 5.575 25 Si 0.772 3.228 26 H -0.174 1.174 27 H -0.204 1.204 28 H -0.168 1.168 29 H 0.121 0.879 30 H 0.087 0.913 31 H 0.116 0.884 32 H 0.182 0.818 33 H 0.257 0.743 34 H 0.103 0.897 35 H 0.102 0.898 36 H 0.052 0.948 37 H 0.124 0.876 38 H 0.131 0.869 39 H 0.096 0.904 40 H 0.081 0.919 41 H 0.106 0.894 42 H 0.088 0.912 43 H 0.095 0.905 44 H 0.103 0.897 45 H 0.049 0.951 46 H 0.128 0.872 47 H 0.105 0.895 48 H 0.112 0.888 49 H 0.068 0.932 50 H 0.091 0.909 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 15.373 22.215 14.078 30.463 hybrid contribution -0.424 -0.709 0.548 0.991 sum 14.948 21.506 14.626 29.998 Atomic orbital electron populations 1.20543 0.85106 1.04435 1.04503 1.21747 0.96730 0.86299 0.99090 1.21405 0.90014 0.99963 1.21539 1.18958 0.88054 0.88958 1.00205 1.41590 1.07049 1.03910 1.76599 1.15702 0.84875 0.80202 0.77811 1.90826 1.25278 1.73711 1.57858 1.47369 1.04590 1.07365 1.76333 1.21828 1.01159 0.76745 0.99141 1.22631 0.88115 1.01597 0.95941 1.61944 1.08806 1.07104 1.47193 1.23361 0.96963 0.96337 0.87839 1.23696 1.00687 0.98916 0.99075 1.22734 1.01175 0.96769 0.96663 1.23069 1.02998 0.94721 0.95952 1.22435 1.01814 0.87857 0.96112 1.22034 0.80917 0.98071 1.00423 1.77154 0.99830 1.09620 1.32140 1.48416 1.01727 1.07046 1.55317 1.19775 0.96429 0.74570 0.97000 1.21251 1.47722 0.98739 0.91148 0.95910 1.25848 0.93740 0.99265 0.99040 1.70039 1.46891 1.19191 1.21424 0.85666 0.80498 0.77636 0.78955 1.17416 1.20363 1.16784 0.87948 0.91256 0.88400 0.81806 0.74272 0.89658 0.89750 0.94799 0.87640 0.86915 0.90369 0.91948 0.89367 0.91152 0.90473 0.89748 0.95121 0.87218 0.89486 0.88775 0.93225 0.90941 0.91744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.87 9.89 71.23 0.70 -2.16 16 2 C 0.09 3.84 6.92 41.39 0.29 4.13 16 3 C -0.30 -12.55 9.52 22.11 0.21 -12.34 16 4 C 0.29 12.27 8.11 133.31 1.08 13.35 16 5 N -0.64 -20.67 5.36 -321.24 -1.72 -22.39 16 6 C 0.71 22.03 8.27 179.06 1.48 23.51 16 7 O -0.60 -22.51 12.97 -4.00 -0.05 -22.56 16 8 N -0.62 -13.41 3.00 -835.03 -2.51 -15.92 16 9 C 0.13 2.42 6.61 86.50 0.57 2.99 16 10 C 0.05 0.63 4.48 86.54 0.39 1.02 16 11 N -0.53 -6.51 4.75 -866.00 -4.11 -10.62 16 12 C 0.06 0.63 3.84 45.44 0.17 0.81 16 13 C -0.18 -1.99 7.37 31.18 0.23 -1.76 16 14 C -0.14 -1.12 8.09 31.18 0.25 -0.87 16 15 C -0.13 -1.11 7.58 31.12 0.24 -0.87 16 16 C 0.05 0.57 5.61 86.38 0.48 1.06 16 17 C 0.11 1.62 6.59 86.35 0.57 2.18 16 18 N -0.36 -16.73 12.59 -54.43 -0.69 -17.42 16 19 N -0.34 -16.23 3.59 -338.45 -1.22 -17.45 16 20 C 0.24 11.66 4.88 85.63 0.42 12.08 16 21 C -0.55 -31.91 9.94 25.60 0.25 -31.65 16 22 H 0.02 1.54 8.06 -2.91 -0.02 1.51 16 23 C 0.02 1.17 5.47 84.65 0.46 1.63 16 24 N -0.94 -57.33 13.96 21.45 0.30 -57.03 16 25 Si 0.95 40.94 27.47 68.60 1.88 42.83 16 26 H -0.25 -9.93 7.11 99.48 0.71 -9.22 16 27 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 28 H -0.24 -9.71 6.54 99.48 0.65 -9.06 16 29 H 0.10 2.69 8.14 -2.39 -0.02 2.67 16 30 H 0.07 2.46 7.71 -2.39 -0.02 2.45 16 31 H 0.10 2.78 8.14 -2.39 -0.02 2.76 16 32 H 0.16 6.78 5.93 -2.91 -0.02 6.76 16 33 H 0.42 10.97 6.32 -92.70 -0.59 10.38 16 34 H 0.09 1.38 8.14 -2.38 -0.02 1.36 16 35 H 0.08 1.81 7.09 -2.39 -0.02 1.79 16 36 H 0.03 0.56 6.46 -2.39 -0.02 0.55 16 37 H 0.11 1.14 6.05 -2.39 -0.01 1.13 16 38 H 0.11 0.95 8.04 -2.39 -0.02 0.93 16 39 H 0.08 1.00 5.65 -2.38 -0.01 0.99 16 40 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 41 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 42 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 43 H 0.08 0.59 8.14 -2.38 -0.02 0.57 16 44 H 0.08 0.75 6.20 -2.39 -0.01 0.74 16 45 H 0.03 0.46 8.14 -2.38 -0.02 0.44 16 46 H 0.11 0.92 8.04 -2.39 -0.02 0.90 16 47 H 0.09 1.21 5.64 -2.39 -0.01 1.19 16 48 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 49 H 0.05 2.37 7.20 -2.39 -0.02 2.35 16 50 H 0.07 3.08 7.07 -2.39 -0.02 3.06 16 51 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 Total: -1.00 -76.72 394.67 0.00 -76.71 By element: Atomic # 1 Polarization: 30.44 SS G_CDS: 0.31 Total: 30.76 kcal Atomic # 6 Polarization: 5.30 SS G_CDS: 7.80 Total: 13.11 kcal Atomic # 7 Polarization: -130.89 SS G_CDS: -9.95 Total: -140.84 kcal Atomic # 8 Polarization: -22.51 SS G_CDS: -0.05 Total: -22.56 kcal Atomic # 14 Polarization: 40.94 SS G_CDS: 1.88 Total: 42.83 kcal Total: -76.72 0.00 -76.71 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272157069.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.295 kcal (2) G-P(sol) polarization free energy of solvation -76.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds