Wall clock time and date at job start Wed Apr 1 2020 05:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.36596 * 126.58365 * 2 1 4 4 C 1.47519 * 125.76846 * 0.02562 * 3 2 1 5 5 O 1.21596 * 120.00349 * 6.51388 * 4 3 2 6 6 N 1.34781 * 120.00064 * 186.51691 * 4 3 2 7 7 C 1.46963 * 120.58961 * 5.98088 * 6 4 3 8 8 C 1.53808 * 108.39755 * 124.76005 * 7 6 4 9 9 N 1.46970 * 108.58006 * 49.63481 * 8 7 6 10 10 C 1.36937 * 120.59561 * 124.66673 * 9 8 7 11 11 H 1.08004 * 120.00079 * 331.22890 * 10 9 8 12 12 C 1.38811 * 119.99979 * 151.22426 * 10 9 8 13 13 N 1.31620 * 119.99959 * 165.16944 * 12 10 9 14 14 Si 1.86801 * 120.00043 * 345.17035 * 12 10 9 15 15 H 1.48501 * 109.46925 * 95.40665 * 14 12 10 16 16 H 1.48493 * 109.47059 * 215.40562 * 14 12 10 17 17 H 1.48496 * 109.47242 * 335.41047 * 14 12 10 18 18 C 1.46965 * 118.80974 * 304.64702 * 9 8 7 19 19 C 1.46959 * 120.59275 * 186.26059 * 6 4 3 20 20 N 1.34401 * 108.45939 * 180.02562 * 3 2 1 21 21 N 1.28764 * 109.52522 * 0.02562 * 20 3 2 22 22 N 1.34815 * 126.57703 * 180.02562 * 2 1 3 23 23 C 1.46503 * 126.59820 * 359.97438 * 22 2 1 24 24 C 1.52996 * 109.46971 * 269.97786 * 23 22 2 25 25 C 1.54267 * 110.03025 * 292.16031 * 24 23 22 26 26 C 1.54891 * 104.19634 * 217.10879 * 25 24 23 27 27 C 1.54885 * 102.74791 * 37.94069 * 26 25 24 28 28 C 1.53880 * 110.03089 * 174.99889 * 24 23 22 29 29 H 1.09006 * 109.46595 * 269.97034 * 1 2 3 30 30 H 1.08997 * 109.47343 * 29.96537 * 1 2 3 31 31 H 1.09003 * 109.47436 * 149.97175 * 1 2 3 32 32 H 1.09000 * 109.60887 * 244.54065 * 7 6 4 33 33 H 1.08995 * 109.61063 * 5.05161 * 7 6 4 34 34 H 1.08998 * 109.74155 * 289.84633 * 8 7 6 35 35 H 1.08998 * 109.53625 * 169.30031 * 8 7 6 36 36 H 0.96993 * 120.00124 * 179.97438 * 13 12 10 37 37 H 1.08999 * 109.60945 * 295.47618 * 18 9 8 38 38 H 1.08999 * 109.74733 * 175.05106 * 18 9 8 39 39 H 1.09002 * 109.61590 * 354.94863 * 19 6 4 40 40 H 1.08998 * 109.60781 * 115.45897 * 19 6 4 41 41 H 1.09010 * 109.46564 * 29.97474 * 23 22 2 42 42 H 1.08993 * 109.47428 * 149.97238 * 23 22 2 43 43 H 1.09000 * 110.02186 * 53.60621 * 24 23 22 44 44 H 1.08997 * 110.48819 * 335.78479 * 25 24 23 45 45 H 1.09002 * 110.48379 * 98.42735 * 25 24 23 46 46 H 1.09002 * 110.75099 * 279.63033 * 26 25 24 47 47 H 1.08991 * 110.91281 * 156.33312 * 26 25 24 48 48 H 1.09002 * 110.48737 * 203.37500 * 27 26 25 49 49 H 1.09008 * 110.48390 * 80.74154 * 27 26 25 50 50 H 1.09004 * 110.03039 * 238.56883 * 28 24 23 51 51 H 1.08998 * 110.03230 * 359.97438 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3211 1.0968 0.0000 4 6 1.8739 2.5026 0.0005 5 8 0.6926 2.7648 0.1205 6 7 2.7746 3.4964 -0.1320 7 6 4.1861 3.1945 -0.4085 8 6 4.6045 3.9522 -1.6799 9 7 4.1940 5.3568 -1.5445 10 6 5.1092 6.3665 -1.6791 11 1 6.1448 6.1940 -1.4257 12 6 4.7058 7.6118 -2.1411 13 7 5.4968 8.6542 -1.9993 14 14 3.0405 7.8082 -2.9643 15 1 2.0430 8.2604 -1.9614 16 1 3.1412 8.8149 -4.0511 17 1 2.6134 6.5052 -3.5343 18 6 2.7835 5.6584 -1.2625 19 6 2.3640 4.9010 0.0034 20 7 3.5984 0.6788 -0.0006 21 7 3.6299 -0.6085 -0.0015 22 7 2.3104 -1.0826 -0.0005 23 6 1.8863 -2.4850 -0.0006 24 6 1.7398 -2.9735 1.4419 25 6 3.1233 -3.0374 2.1212 26 6 3.0483 -4.2981 3.0180 27 6 2.2354 -5.2886 2.1478 28 6 1.1753 -4.4049 1.4588 29 1 -0.3633 -0.0005 1.0278 30 1 -0.3634 0.8903 -0.5133 31 1 -0.3634 -0.8897 -0.5143 32 1 4.8006 3.5174 0.4319 33 1 4.3074 2.1224 -0.5630 34 1 4.1167 3.5106 -2.5489 35 1 5.6868 3.8971 -1.7975 36 1 5.2152 9.5243 -2.3225 37 1 2.1661 5.3384 -2.1018 38 1 2.6603 6.7300 -1.1053 39 1 1.2817 4.9561 0.1210 40 1 2.8518 5.3425 0.8724 41 1 0.9288 -2.5749 -0.5138 42 1 2.6325 -3.0902 -0.5152 43 1 1.0809 -2.3057 1.9969 44 1 3.9101 -3.1465 1.3749 45 1 3.2920 -2.1474 2.7275 46 1 2.5230 -4.0799 3.9478 47 1 4.0445 -4.6905 3.2216 48 1 1.7562 -6.0416 2.7735 49 1 2.8789 -5.7613 1.4057 50 1 0.2428 -4.4319 2.0227 51 1 1.0053 -4.7513 0.4394 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279125541.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:09 Heat of formation + Delta-G solvation = 95.645916 kcal Electronic energy + Delta-G solvation = -31421.279647 eV Core-core repulsion = 27358.873136 eV Total energy + Delta-G solvation = -4062.406511 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -42.43426 -39.48718 -38.87701 -37.00049 -35.12655 -33.85922 -32.57069 -31.42302 -30.93673 -30.10710 -29.18022 -28.21807 -26.91565 -25.94868 -23.95009 -23.49555 -22.51451 -21.47419 -21.08708 -20.64939 -20.18364 -19.16842 -17.65949 -16.64467 -16.47980 -16.15603 -15.95536 -15.69489 -15.39648 -15.08102 -14.56151 -14.39048 -14.25189 -14.13888 -13.86317 -13.78748 -13.57809 -13.30189 -13.15296 -12.90045 -12.65489 -12.42624 -12.38685 -12.03377 -11.91659 -11.80481 -11.68644 -11.53951 -11.51668 -11.31245 -11.14627 -11.03797 -10.95425 -10.55132 -10.32099 -10.10849 -10.09805 -9.98670 -9.58469 -9.40368 -9.19009 -8.77773 -8.22563 -6.88057 -5.91386 -3.32040 1.02240 1.72806 1.83571 3.27386 3.33828 3.45135 3.50676 3.52535 3.87230 3.95981 4.00769 4.15619 4.26168 4.44445 4.53526 4.59406 4.63509 4.68328 4.91144 4.93788 5.00990 5.04605 5.09148 5.16295 5.20453 5.24913 5.32722 5.36524 5.43738 5.46869 5.51672 5.61298 5.68586 5.72022 5.73299 5.77574 5.86488 5.88712 5.93386 6.07368 6.18193 6.24425 6.27710 6.44147 6.61124 6.61518 6.81273 7.01106 7.74120 7.94143 7.97868 8.35326 8.42044 8.93797 9.72589 10.10111 11.24476 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.026700 B = 0.002346 C = 0.002240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.444203 B =11932.450805 C =12497.033493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.119 3.881 3 C -0.093 4.093 4 C 0.596 3.404 5 O -0.553 6.553 6 N -0.580 5.580 7 C 0.063 3.937 8 C 0.137 3.863 9 N -0.608 5.608 10 C -0.258 4.258 11 H 0.088 0.912 12 C 0.021 3.979 13 N -0.913 5.913 14 Si 0.887 3.113 15 H -0.288 1.288 16 H -0.304 1.304 17 H -0.267 1.267 18 C 0.114 3.886 19 C 0.095 3.905 20 N -0.199 5.199 21 N -0.069 5.069 22 N -0.359 5.359 23 C 0.126 3.874 24 C -0.110 4.110 25 C -0.118 4.118 26 C -0.125 4.125 27 C -0.125 4.125 28 C -0.116 4.116 29 H 0.090 0.910 30 H 0.110 0.890 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.125 0.875 34 H 0.025 0.975 35 H 0.075 0.925 36 H 0.262 0.738 37 H 0.034 0.966 38 H 0.079 0.921 39 H 0.086 0.914 40 H 0.072 0.928 41 H 0.100 0.900 42 H 0.107 0.893 43 H 0.080 0.920 44 H 0.075 0.925 45 H 0.065 0.935 46 H 0.066 0.934 47 H 0.068 0.932 48 H 0.066 0.934 49 H 0.067 0.933 50 H 0.071 0.929 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.914 -29.688 7.554 32.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.018 4.018 3 C -0.232 4.232 4 C 0.382 3.618 5 O -0.432 6.432 6 N -0.311 5.311 7 C -0.062 4.062 8 C 0.011 3.989 9 N -0.332 5.332 10 C -0.387 4.387 11 H 0.106 0.894 12 C -0.178 4.178 13 N -0.556 5.556 14 Si 0.718 3.282 15 H -0.216 1.216 16 H -0.233 1.233 17 H -0.192 1.192 18 C -0.013 4.013 19 C -0.029 4.029 20 N -0.071 5.071 21 N -0.047 5.047 22 N -0.145 5.145 23 C 0.005 3.995 24 C -0.129 4.129 25 C -0.156 4.156 26 C -0.163 4.163 27 C -0.162 4.162 28 C -0.154 4.154 29 H 0.108 0.892 30 H 0.128 0.872 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.142 0.858 34 H 0.043 0.957 35 H 0.094 0.906 36 H 0.072 0.928 37 H 0.052 0.948 38 H 0.097 0.903 39 H 0.104 0.896 40 H 0.090 0.910 41 H 0.118 0.882 42 H 0.125 0.875 43 H 0.099 0.901 44 H 0.094 0.906 45 H 0.083 0.917 46 H 0.085 0.915 47 H 0.087 0.913 48 H 0.085 0.915 49 H 0.086 0.914 50 H 0.089 0.911 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -9.975 -29.783 7.556 32.305 hybrid contribution -1.735 0.512 -0.467 1.868 sum -11.709 -29.271 7.089 32.313 Atomic orbital electron populations 1.20660 0.84897 1.05015 1.04467 1.21836 0.96125 0.86315 0.97544 1.21251 0.88822 0.95460 1.17665 1.16815 0.85282 0.82495 0.77197 1.90712 1.16097 1.83344 1.53067 1.47816 1.09566 1.06024 1.67651 1.23310 0.79758 1.03574 0.99545 1.21396 0.99243 0.84632 0.93651 1.44320 1.04284 1.01877 1.82708 1.18965 0.91867 0.89592 1.38251 0.89449 1.25322 0.97609 0.95999 0.98854 1.69776 1.37456 0.99378 1.48984 0.86914 0.84509 0.77362 0.79369 1.21631 1.23260 1.19231 1.21778 0.86705 0.98696 0.94084 1.22307 1.00579 0.79723 1.00261 1.74392 1.18702 1.03460 1.10554 1.82001 0.96156 1.03877 1.22668 1.50371 1.06363 1.07168 1.50581 1.22240 1.02180 0.76325 0.98742 1.22227 0.98816 0.97742 0.94149 1.22429 0.95816 0.98290 0.99032 1.22501 1.00331 0.95269 0.98199 1.22366 0.97333 0.97634 0.98908 1.22130 0.98938 0.92971 1.01368 0.89161 0.87186 0.90973 0.91472 0.85798 0.95701 0.90625 0.92766 0.94782 0.90280 0.89611 0.91005 0.88152 0.87516 0.90133 0.90624 0.91661 0.91538 0.91301 0.91486 0.91384 0.91058 0.91229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.79 9.51 36.00 0.34 -0.45 16 2 C 0.12 1.39 7.02 -81.88 -0.57 0.82 16 3 C -0.09 -1.42 6.72 -83.55 -0.56 -1.98 16 4 C 0.60 10.57 7.68 -12.48 -0.10 10.47 16 5 O -0.55 -10.32 14.22 5.28 0.08 -10.24 16 6 N -0.58 -10.92 2.94 -173.45 -0.51 -11.43 16 7 C 0.06 1.15 6.34 -3.37 -0.02 1.13 16 8 C 0.14 2.84 6.69 -3.37 -0.02 2.81 16 9 N -0.61 -14.85 2.76 -171.77 -0.47 -15.32 16 10 C -0.26 -7.29 10.07 -15.06 -0.15 -7.44 16 11 H 0.09 2.62 8.06 -52.48 -0.42 2.19 16 12 C 0.02 0.61 5.34 -17.43 -0.09 0.51 16 13 N -0.91 -28.24 13.97 55.49 0.78 -27.46 16 14 Si 0.89 22.81 24.31 -169.99 -4.13 18.67 16 15 H -0.29 -7.15 6.77 56.52 0.38 -6.76 16 16 H -0.30 -7.95 7.11 56.52 0.40 -7.55 16 17 H -0.27 -6.77 5.98 56.52 0.34 -6.43 16 18 C 0.11 2.59 4.29 -3.60 -0.02 2.57 16 19 C 0.10 1.87 6.60 -3.60 -0.02 1.85 16 20 N -0.20 -3.05 8.74 32.85 0.29 -2.77 16 21 N -0.07 -0.92 13.79 60.35 0.83 -0.09 16 22 N -0.36 -3.66 3.45 -56.85 -0.20 -3.86 16 23 C 0.13 0.74 5.36 -4.04 -0.02 0.72 16 24 C -0.11 -0.60 3.15 -89.50 -0.28 -0.88 16 25 C -0.12 -0.81 6.19 -25.07 -0.16 -0.97 16 26 C -0.13 -0.69 6.91 -24.74 -0.17 -0.86 16 27 C -0.12 -0.53 6.83 -25.08 -0.17 -0.70 16 28 C -0.12 -0.43 6.46 -25.61 -0.17 -0.60 16 29 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.11 1.18 6.59 -51.93 -0.34 0.84 16 31 H 0.07 0.39 7.18 -51.93 -0.37 0.02 16 32 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.13 2.12 3.95 -96.48 -0.38 1.74 16 34 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.08 1.51 7.93 -51.93 -0.41 1.10 16 36 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 37 H 0.03 0.79 6.82 -51.93 -0.35 0.44 16 38 H 0.08 1.91 4.20 -51.93 -0.22 1.70 16 39 H 0.09 1.60 6.99 -51.93 -0.36 1.24 16 40 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 41 H 0.10 0.36 7.16 -51.92 -0.37 -0.01 16 42 H 0.11 0.55 8.00 -51.93 -0.42 0.13 16 43 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 44 H 0.08 0.57 7.76 -51.93 -0.40 0.17 16 45 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 47 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 48 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 49 H 0.07 0.27 8.14 -51.92 -0.42 -0.15 16 50 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 51 H 0.07 0.18 7.67 -51.93 -0.40 -0.22 16 LS Contribution 389.35 15.07 5.87 5.87 Total: -1.00 -33.92 389.35 -7.98 -41.90 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: -8.32 Total: -2.28 kcal Atomic # 6 Polarization: 9.19 SS G_CDS: -2.18 Total: 7.01 kcal Atomic # 7 Polarization: -61.64 SS G_CDS: 0.71 Total: -60.93 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: 0.08 Total: -10.24 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -4.13 Total: 18.67 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.92 -7.98 -41.90 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279125541.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.550 kcal (2) G-P(sol) polarization free energy of solvation -33.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds