Wall clock time and date at job start Wed Apr 1 2020 04:47:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35236 * 126.07053 * 2 1 4 4 C 1.40415 * 107.86824 * 179.84777 * 3 2 1 5 5 N 1.40148 * 125.97962 * 180.16445 * 4 3 2 6 6 C 1.37468 * 119.99442 * 0.32025 * 5 4 3 7 7 O 1.35109 * 120.00446 * 0.02562 * 6 5 4 8 8 N 1.30111 * 119.99833 * 179.97438 * 6 5 4 9 9 C 1.46504 * 120.00064 * 185.04552 * 8 6 5 10 10 H 1.08998 * 109.47031 * 5.67556 * 9 8 6 11 11 C 1.52995 * 109.47004 * 125.67488 * 9 8 6 12 12 C 1.50706 * 109.47133 * 245.67463 * 9 8 6 13 13 C 1.29819 * 118.55103 * 124.73788 * 12 9 8 14 14 C 1.50143 * 123.28207 * 180.10370 * 13 12 9 15 15 N 1.46846 * 110.33245 * 343.43099 * 14 13 12 16 16 C 1.46897 * 111.00012 * 287.33012 * 15 14 13 17 17 C 1.47233 * 110.20517 * 50.71950 * 15 14 13 18 18 C 1.50308 * 118.55002 * 304.99794 * 12 9 8 19 19 N 1.31221 * 108.05305 * 0.41488 * 4 3 2 20 20 N 1.34970 * 126.06726 * 180.30809 * 2 1 3 21 21 C 1.46498 * 125.97775 * 359.97438 * 20 2 1 22 22 C 1.50706 * 109.46990 * 90.00241 * 21 20 2 23 23 H 1.08002 * 119.99896 * 0.02562 * 22 21 20 24 24 C 1.37871 * 120.00167 * 180.02562 * 22 21 20 25 25 N 1.31512 * 119.99957 * 0.02562 * 24 22 21 26 26 Si 1.86804 * 119.99984 * 180.02562 * 24 22 21 27 27 H 1.48496 * 109.47070 * 90.00024 * 26 24 22 28 28 H 1.48500 * 109.47063 * 210.00231 * 26 24 22 29 29 H 1.48501 * 109.46959 * 330.00082 * 26 24 22 30 30 H 1.09000 * 109.47341 * 269.69178 * 1 2 3 31 31 H 1.09004 * 109.47433 * 149.69312 * 1 2 3 32 32 H 1.09000 * 109.46959 * 29.69706 * 1 2 3 33 33 H 1.07993 * 126.07008 * 359.97166 * 3 2 1 34 34 H 0.97000 * 120.00140 * 180.32299 * 5 4 3 35 35 H 0.96698 * 114.00048 * 94.73447 * 7 6 5 36 36 H 1.08993 * 109.47611 * 59.99955 * 11 9 8 37 37 H 1.09004 * 109.47191 * 180.02562 * 11 9 8 38 38 H 1.09006 * 109.47098 * 299.99676 * 11 9 8 39 39 H 1.08000 * 118.36289 * 0.34338 * 13 12 9 40 40 H 1.08999 * 109.47518 * 223.06067 * 14 13 12 41 41 H 1.09001 * 109.00986 * 103.50483 * 14 13 12 42 42 H 1.08999 * 109.47479 * 182.93494 * 16 15 14 43 43 H 1.09005 * 109.47018 * 302.93806 * 16 15 14 44 44 H 1.09004 * 109.47146 * 62.93100 * 16 15 14 45 45 H 1.09004 * 109.63540 * 171.50230 * 17 15 14 46 46 H 1.09000 * 109.80606 * 50.99169 * 17 15 14 47 47 H 1.08992 * 109.43187 * 283.57796 * 18 12 9 48 48 H 1.08998 * 109.42949 * 43.48207 * 18 12 9 49 49 H 1.08998 * 109.47708 * 210.00452 * 21 20 2 50 50 H 1.09000 * 109.47124 * 330.00720 * 21 20 2 51 51 H 0.97004 * 120.00299 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0931 0.0000 4 6 3.6371 0.6545 0.0036 5 7 4.7735 1.4747 0.0080 6 6 4.6340 2.8422 0.0158 7 8 3.4015 3.3956 0.0197 8 7 5.6890 3.6037 0.0204 9 6 5.5432 5.0565 0.1403 10 1 4.4961 5.3034 0.3153 11 6 6.3885 5.5588 1.3124 12 6 6.0085 5.7149 -1.1330 13 6 5.1922 6.5106 -1.7543 14 6 5.5439 7.2194 -3.0302 15 7 6.9976 7.2053 -3.2378 16 6 7.6711 8.1215 -2.3077 17 6 7.5179 5.8351 -3.0983 18 6 7.3950 5.4166 -1.6309 19 7 3.6337 -0.6577 -0.0034 20 7 2.3016 -1.0910 -0.0059 21 6 1.8500 -2.4846 -0.0128 22 6 1.6947 -2.9552 -1.4361 23 1 1.9112 -2.2835 -2.2536 24 6 1.2762 -4.2432 -1.6945 25 7 1.0121 -5.0610 -0.6990 26 14 1.0844 -4.8267 -3.4587 27 1 2.3652 -5.4136 -3.9280 28 1 0.0147 -5.8544 -3.5266 29 1 0.7208 -3.6758 -4.3239 30 1 -0.3634 -0.0055 1.0276 31 1 -0.3634 -0.8872 -0.5186 32 1 -0.3633 0.8927 -0.5091 33 1 1.9720 2.1210 -0.0004 34 1 5.6584 1.0773 0.0055 35 1 3.0731 3.6183 0.9016 36 1 7.4356 5.3120 1.1375 37 1 6.2797 6.6397 1.4020 38 1 6.0519 5.0827 2.2334 39 1 4.2125 6.6738 -1.3301 40 1 5.1965 8.2513 -2.9803 41 1 5.0555 6.7141 -3.8634 42 1 8.7406 8.1308 -2.5175 43 1 7.2676 9.1265 -2.4317 44 1 7.5045 7.7869 -1.2837 45 1 8.5650 5.8084 -3.4003 46 1 6.9391 5.1548 -3.7230 47 1 8.1211 5.9688 -1.0343 48 1 7.5901 4.3479 -1.5418 49 1 2.5847 -3.1073 0.4976 50 1 0.8915 -2.5585 0.5009 51 1 0.7181 -5.9674 -0.8808 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330777439.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:54 Heat of formation + Delta-G solvation = 87.137666 kcal Electronic energy + Delta-G solvation = -30337.487938 eV Core-core repulsion = 26274.712481 eV Total energy + Delta-G solvation = -4062.775456 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.76537 -40.04146 -39.12875 -35.86344 -35.27494 -33.54780 -32.41446 -31.46680 -31.11000 -30.87652 -29.68143 -27.38478 -26.67824 -26.45135 -24.43457 -23.52881 -22.87395 -22.13818 -20.92727 -20.38948 -19.25075 -17.81463 -17.65836 -16.78943 -16.63676 -16.43940 -15.92274 -15.65543 -15.42441 -14.98725 -14.78928 -14.46819 -14.34079 -14.20328 -13.75183 -13.34967 -13.24477 -12.77504 -12.74781 -12.57122 -12.54246 -12.44189 -12.42380 -12.25813 -12.08655 -11.94872 -11.63099 -11.57516 -11.45583 -11.29275 -11.13975 -10.94204 -10.85850 -10.73723 -10.30378 -9.92072 -9.87249 -9.53010 -9.09215 -8.98051 -8.68978 -8.51615 -7.99818 -7.38723 -6.30244 -4.38326 1.87633 2.07223 2.61510 2.70981 3.19177 3.25678 3.29922 3.50483 3.63990 3.78378 4.17571 4.27642 4.49295 4.63948 4.80683 4.89604 5.01446 5.03432 5.04450 5.16060 5.19938 5.24546 5.30483 5.33393 5.51210 5.53311 5.59261 5.61111 5.63460 5.68997 5.78990 5.83078 5.84442 5.86890 5.96489 5.98811 6.14412 6.27677 6.33853 6.53094 6.69567 6.73314 6.75674 6.81861 6.87602 6.97457 7.01420 7.35506 7.54034 7.61701 7.82929 7.94484 8.30798 8.55771 8.69291 9.28538 10.76877 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.016214 B = 0.002074 C = 0.001971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.517687 B =13500.407746 C =14199.315671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.102 3.898 3 C -0.315 4.315 4 C 0.276 3.724 5 N -0.609 5.609 6 C 0.579 3.421 7 O -0.518 6.518 8 N -0.599 5.599 9 C 0.130 3.870 10 H 0.054 0.946 11 C -0.134 4.134 12 C -0.093 4.093 13 C -0.198 4.198 14 C 0.084 3.916 15 N -0.534 5.534 16 C 0.018 3.982 17 C 0.050 3.950 18 C -0.114 4.114 19 N -0.320 5.320 20 N -0.316 5.316 21 C 0.258 3.742 22 C -0.538 4.538 23 H 0.064 0.936 24 C 0.066 3.934 25 N -0.891 5.891 26 Si 0.906 3.094 27 H -0.277 1.277 28 H -0.283 1.283 29 H -0.272 1.272 30 H 0.071 0.929 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.154 0.846 34 H 0.428 0.572 35 H 0.402 0.598 36 H 0.063 0.937 37 H 0.057 0.943 38 H 0.053 0.947 39 H 0.106 0.894 40 H 0.080 0.920 41 H 0.085 0.915 42 H 0.065 0.935 43 H 0.064 0.936 44 H 0.035 0.965 45 H 0.078 0.922 46 H 0.076 0.924 47 H 0.072 0.928 48 H 0.090 0.910 49 H 0.053 0.947 50 H 0.055 0.945 51 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.844 24.030 2.880 25.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.030 4.030 3 C -0.347 4.347 4 C 0.022 3.978 5 N -0.252 5.252 6 C 0.264 3.736 7 O -0.321 6.321 8 N -0.344 5.344 9 C 0.019 3.981 10 H 0.072 0.928 11 C -0.192 4.192 12 C -0.094 4.094 13 C -0.219 4.219 14 C -0.044 4.044 15 N -0.256 5.256 16 C -0.130 4.130 17 C -0.078 4.078 18 C -0.152 4.152 19 N -0.149 5.149 20 N -0.098 5.098 21 C 0.140 3.860 22 C -0.576 4.576 23 H 0.083 0.917 24 C -0.138 4.138 25 N -0.529 5.529 26 Si 0.733 3.267 27 H -0.203 1.203 28 H -0.208 1.208 29 H -0.196 1.196 30 H 0.090 0.910 31 H 0.102 0.898 32 H 0.094 0.906 33 H 0.172 0.828 34 H 0.267 0.733 35 H 0.261 0.739 36 H 0.082 0.918 37 H 0.076 0.924 38 H 0.072 0.928 39 H 0.124 0.876 40 H 0.099 0.901 41 H 0.103 0.897 42 H 0.084 0.916 43 H 0.083 0.917 44 H 0.054 0.946 45 H 0.096 0.904 46 H 0.095 0.905 47 H 0.090 0.910 48 H 0.108 0.892 49 H 0.071 0.929 50 H 0.073 0.927 51 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 8.189 22.809 1.801 24.301 hybrid contribution -1.308 0.041 0.492 1.398 sum 6.881 22.850 2.293 23.973 Atomic orbital electron populations 1.20404 0.87881 1.04052 1.02583 1.21029 0.94888 0.87146 0.99949 1.21101 0.89807 0.99503 1.24302 1.18920 0.86627 0.89823 1.02425 1.40711 1.07575 1.00822 1.76049 1.20093 0.80927 0.83689 0.88872 1.84833 1.32958 1.79465 1.34857 1.72536 1.24972 1.05139 1.31714 1.20275 0.98114 0.86662 0.93050 0.92752 1.21741 1.00900 0.99888 0.96679 1.20845 0.96058 0.96335 0.96186 1.22718 0.99899 1.00591 0.98645 1.21047 0.88368 1.00184 0.94783 1.62747 1.03929 1.07962 1.50973 1.22426 0.99310 0.96396 0.94865 1.22292 1.00905 0.89312 0.95313 1.20930 0.94034 1.03378 0.96842 1.77340 0.99769 1.08299 1.29537 1.49050 1.00915 1.07860 1.51938 1.19715 0.95992 0.71243 0.99021 1.21310 1.46937 0.98065 0.91297 0.91734 1.24927 0.94607 0.96032 0.98189 1.69915 1.44788 1.06996 1.31174 0.86353 0.78073 0.78590 0.83675 1.20282 1.20850 1.19640 0.90988 0.89764 0.90591 0.82833 0.73308 0.73889 0.91831 0.92445 0.92776 0.87623 0.90128 0.89741 0.91621 0.91730 0.94649 0.90388 0.90531 0.91020 0.89167 0.92926 0.92747 0.92204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.39 9.89 36.00 0.36 -1.03 16 2 C 0.10 1.95 6.92 -82.28 -0.57 1.38 16 3 C -0.32 -5.50 9.55 -39.83 -0.38 -5.88 16 4 C 0.28 5.14 8.12 -154.40 -1.25 3.89 16 5 N -0.61 -9.27 5.56 -13.08 -0.07 -9.34 16 6 C 0.58 7.72 8.55 -88.44 -0.76 6.96 16 7 O -0.52 -6.01 8.36 -17.03 -0.14 -6.15 16 8 N -0.60 -7.58 9.62 -57.09 -0.55 -8.13 16 9 C 0.13 1.38 3.04 -69.08 -0.21 1.17 16 10 H 0.05 0.56 6.25 -51.93 -0.32 0.24 16 11 C -0.13 -1.22 9.39 37.15 0.35 -0.88 16 12 C -0.09 -0.99 4.30 -100.92 -0.43 -1.42 16 13 C -0.20 -1.99 9.10 -35.96 -0.33 -2.31 16 14 C 0.08 0.77 5.94 -5.27 -0.03 0.74 16 15 N -0.53 -5.05 5.29 -244.41 -1.29 -6.34 16 16 C 0.02 0.15 8.91 60.06 0.54 0.68 16 17 C 0.05 0.48 6.06 -3.60 -0.02 0.46 16 18 C -0.11 -1.14 4.73 -28.03 -0.13 -1.28 16 19 N -0.32 -7.08 12.59 31.44 0.40 -6.68 16 20 N -0.32 -7.11 3.59 -58.33 -0.21 -7.31 16 21 C 0.26 6.40 5.81 -5.19 -0.03 6.37 16 22 C -0.54 -14.50 9.39 -34.44 -0.32 -14.82 16 23 H 0.06 1.81 7.81 -52.49 -0.41 1.40 16 24 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 25 N -0.89 -24.61 13.29 55.43 0.74 -23.87 16 26 Si 0.91 20.87 29.54 -169.99 -5.02 15.85 16 27 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 28 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 29 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 30 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 31 H 0.08 1.43 7.71 -51.93 -0.40 1.03 16 32 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 33 H 0.15 2.24 5.55 -52.49 -0.29 1.95 16 34 H 0.43 6.14 8.94 -40.82 -0.36 5.77 16 35 H 0.40 2.93 8.90 45.56 0.41 3.33 16 36 H 0.06 0.61 7.74 -51.93 -0.40 0.21 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.11 1.02 7.64 -52.49 -0.40 0.62 16 40 H 0.08 0.63 7.98 -51.93 -0.41 0.22 16 41 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.06 0.45 8.05 -51.93 -0.42 0.04 16 44 H 0.03 0.29 5.68 -51.93 -0.29 0.00 16 45 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.08 0.82 8.09 -51.93 -0.42 0.40 16 47 H 0.07 0.67 6.85 -51.93 -0.36 0.31 16 48 H 0.09 1.04 7.64 -51.93 -0.40 0.65 16 49 H 0.05 1.40 8.14 -51.93 -0.42 0.98 16 50 H 0.05 1.33 7.65 -51.93 -0.40 0.93 16 51 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 410.23 15.07 6.18 6.18 Total: -1.00 -30.61 410.23 -10.70 -41.32 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: -7.40 Total: 8.78 kcal Atomic # 6 Polarization: -0.97 SS G_CDS: -3.33 Total: -4.30 kcal Atomic # 7 Polarization: -60.68 SS G_CDS: -0.99 Total: -61.68 kcal Atomic # 8 Polarization: -6.01 SS G_CDS: -0.14 Total: -6.15 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -30.61 -10.70 -41.32 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330777439.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.455 kcal (2) G-P(sol) polarization free energy of solvation -30.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds