Wall clock time and date at job start Wed Apr 1 2020 04:47:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35236 * 126.07053 * 2 1 4 4 C 1.40415 * 107.86824 * 179.84777 * 3 2 1 5 5 N 1.40148 * 125.97962 * 180.16445 * 4 3 2 6 6 C 1.37468 * 119.99442 * 0.32025 * 5 4 3 7 7 O 1.35109 * 120.00446 * 0.02562 * 6 5 4 8 8 N 1.30111 * 119.99833 * 179.97438 * 6 5 4 9 9 C 1.46504 * 120.00064 * 185.04552 * 8 6 5 10 10 H 1.08998 * 109.47031 * 5.67556 * 9 8 6 11 11 C 1.52995 * 109.47004 * 125.67488 * 9 8 6 12 12 C 1.50706 * 109.47133 * 245.67463 * 9 8 6 13 13 C 1.29819 * 118.55103 * 124.73788 * 12 9 8 14 14 C 1.50143 * 123.28207 * 180.10370 * 13 12 9 15 15 N 1.46846 * 110.33245 * 343.43099 * 14 13 12 16 16 C 1.46897 * 111.00012 * 287.33012 * 15 14 13 17 17 C 1.47233 * 110.20517 * 50.71950 * 15 14 13 18 18 C 1.50308 * 118.55002 * 304.99794 * 12 9 8 19 19 N 1.31221 * 108.05305 * 0.41488 * 4 3 2 20 20 N 1.34970 * 126.06726 * 180.30809 * 2 1 3 21 21 C 1.46498 * 125.97775 * 359.97438 * 20 2 1 22 22 C 1.50706 * 109.46990 * 90.00241 * 21 20 2 23 23 H 1.08002 * 119.99896 * 0.02562 * 22 21 20 24 24 C 1.37871 * 120.00167 * 180.02562 * 22 21 20 25 25 N 1.31512 * 119.99957 * 0.02562 * 24 22 21 26 26 Si 1.86804 * 119.99984 * 180.02562 * 24 22 21 27 27 H 1.48496 * 109.47070 * 90.00024 * 26 24 22 28 28 H 1.48500 * 109.47063 * 210.00231 * 26 24 22 29 29 H 1.48501 * 109.46959 * 330.00082 * 26 24 22 30 30 H 1.09000 * 109.47341 * 269.69178 * 1 2 3 31 31 H 1.09004 * 109.47433 * 149.69312 * 1 2 3 32 32 H 1.09000 * 109.46959 * 29.69706 * 1 2 3 33 33 H 1.07993 * 126.07008 * 359.97166 * 3 2 1 34 34 H 0.97000 * 120.00140 * 180.32299 * 5 4 3 35 35 H 0.96698 * 114.00048 * 94.73447 * 7 6 5 36 36 H 1.08993 * 109.47611 * 59.99955 * 11 9 8 37 37 H 1.09004 * 109.47191 * 180.02562 * 11 9 8 38 38 H 1.09006 * 109.47098 * 299.99676 * 11 9 8 39 39 H 1.08000 * 118.36289 * 0.34338 * 13 12 9 40 40 H 1.08999 * 109.47518 * 223.06067 * 14 13 12 41 41 H 1.09001 * 109.00986 * 103.50483 * 14 13 12 42 42 H 1.08999 * 109.47479 * 182.93494 * 16 15 14 43 43 H 1.09005 * 109.47018 * 302.93806 * 16 15 14 44 44 H 1.09004 * 109.47146 * 62.93100 * 16 15 14 45 45 H 1.09004 * 109.63540 * 171.50230 * 17 15 14 46 46 H 1.09000 * 109.80606 * 50.99169 * 17 15 14 47 47 H 1.08992 * 109.43187 * 283.57796 * 18 12 9 48 48 H 1.08998 * 109.42949 * 43.48207 * 18 12 9 49 49 H 1.08998 * 109.47708 * 210.00452 * 21 20 2 50 50 H 1.09000 * 109.47124 * 330.00720 * 21 20 2 51 51 H 0.97004 * 120.00299 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0931 0.0000 4 6 3.6371 0.6545 0.0036 5 7 4.7735 1.4747 0.0080 6 6 4.6340 2.8422 0.0158 7 8 3.4015 3.3956 0.0197 8 7 5.6890 3.6037 0.0204 9 6 5.5432 5.0565 0.1403 10 1 4.4961 5.3034 0.3153 11 6 6.3885 5.5588 1.3124 12 6 6.0085 5.7149 -1.1330 13 6 5.1922 6.5106 -1.7543 14 6 5.5439 7.2194 -3.0302 15 7 6.9976 7.2053 -3.2378 16 6 7.6711 8.1215 -2.3077 17 6 7.5179 5.8351 -3.0983 18 6 7.3950 5.4166 -1.6309 19 7 3.6337 -0.6577 -0.0034 20 7 2.3016 -1.0910 -0.0059 21 6 1.8500 -2.4846 -0.0128 22 6 1.6947 -2.9552 -1.4361 23 1 1.9112 -2.2835 -2.2536 24 6 1.2762 -4.2432 -1.6945 25 7 1.0121 -5.0610 -0.6990 26 14 1.0844 -4.8267 -3.4587 27 1 2.3652 -5.4136 -3.9280 28 1 0.0147 -5.8544 -3.5266 29 1 0.7208 -3.6758 -4.3239 30 1 -0.3634 -0.0055 1.0276 31 1 -0.3634 -0.8872 -0.5186 32 1 -0.3633 0.8927 -0.5091 33 1 1.9720 2.1210 -0.0004 34 1 5.6584 1.0773 0.0055 35 1 3.0731 3.6183 0.9016 36 1 7.4356 5.3120 1.1375 37 1 6.2797 6.6397 1.4020 38 1 6.0519 5.0827 2.2334 39 1 4.2125 6.6738 -1.3301 40 1 5.1965 8.2513 -2.9803 41 1 5.0555 6.7141 -3.8634 42 1 8.7406 8.1308 -2.5175 43 1 7.2676 9.1265 -2.4317 44 1 7.5045 7.7869 -1.2837 45 1 8.5650 5.8084 -3.4003 46 1 6.9391 5.1548 -3.7230 47 1 8.1211 5.9688 -1.0343 48 1 7.5901 4.3479 -1.5418 49 1 2.5847 -3.1073 0.4976 50 1 0.8915 -2.5585 0.5009 51 1 0.7181 -5.9674 -0.8808 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330777439.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:53 Heat of formation + Delta-G solvation = 64.519644 kcal Electronic energy + Delta-G solvation = -30338.468729 eV Core-core repulsion = 26274.712481 eV Total energy + Delta-G solvation = -4063.756247 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.19989 -40.88826 -40.10976 -36.82771 -36.42120 -35.39732 -33.59921 -32.73800 -32.43372 -31.84391 -30.64277 -28.44160 -28.05781 -27.84315 -25.34013 -24.92351 -24.08605 -23.05513 -21.98832 -21.59189 -20.65795 -18.91434 -18.79430 -18.45736 -17.72823 -17.46698 -17.24504 -16.70416 -16.38699 -16.36186 -15.97835 -15.86944 -15.51507 -14.95420 -14.83254 -14.47245 -14.42878 -14.12105 -13.82586 -13.78100 -13.72445 -13.47591 -13.36304 -13.21187 -13.17652 -12.98885 -12.84346 -12.72381 -12.71976 -12.61491 -12.36932 -12.28245 -12.05764 -12.03444 -11.71874 -11.56271 -11.36851 -10.74699 -10.48626 -10.41421 -9.77845 -9.47654 -9.25097 -8.80146 -8.32003 -6.50998 0.83812 1.09453 1.28762 1.36637 1.37620 1.41362 1.50100 2.14888 2.22046 2.35988 2.96150 3.07773 3.19242 3.63117 3.81659 3.87403 4.03770 4.13309 4.19453 4.23698 4.34965 4.41424 4.43304 4.53349 4.57036 4.63920 4.74160 4.77978 4.80901 4.82904 4.87461 4.88663 4.89620 4.97501 5.02622 5.05023 5.06713 5.09642 5.11375 5.24402 5.30654 5.46050 5.54253 5.56297 5.81155 5.92322 6.01391 6.03738 6.15156 6.20814 6.28337 6.30454 6.62539 7.08536 7.20128 7.28168 8.72083 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.016214 B = 0.002074 C = 0.001971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.517687 B =13500.407746 C =14199.315671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.092 3.908 3 C -0.307 4.307 4 C 0.289 3.711 5 N -0.610 5.610 6 C 0.575 3.425 7 O -0.519 6.519 8 N -0.600 5.600 9 C 0.126 3.874 10 H 0.062 0.938 11 C -0.128 4.128 12 C -0.108 4.108 13 C -0.193 4.193 14 C 0.083 3.917 15 N -0.542 5.542 16 C 0.019 3.981 17 C 0.052 3.948 18 C -0.107 4.107 19 N -0.372 5.372 20 N -0.346 5.346 21 C 0.276 3.724 22 C -0.552 4.552 23 H 0.048 0.952 24 C 0.023 3.977 25 N -0.917 5.917 26 Si 0.969 3.031 27 H -0.277 1.277 28 H -0.270 1.270 29 H -0.269 1.269 30 H 0.095 0.905 31 H 0.061 0.939 32 H 0.107 0.893 33 H 0.187 0.813 34 H 0.429 0.571 35 H 0.420 0.580 36 H 0.056 0.944 37 H 0.072 0.928 38 H 0.055 0.945 39 H 0.112 0.888 40 H 0.097 0.903 41 H 0.079 0.921 42 H 0.072 0.928 43 H 0.074 0.926 44 H 0.031 0.969 45 H 0.087 0.913 46 H 0.062 0.938 47 H 0.079 0.921 48 H 0.071 0.929 49 H 0.021 0.979 50 H 0.054 0.946 51 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.309 26.640 2.437 27.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.038 4.038 3 C -0.338 4.338 4 C 0.033 3.967 5 N -0.254 5.254 6 C 0.260 3.740 7 O -0.326 6.326 8 N -0.344 5.344 9 C 0.016 3.984 10 H 0.080 0.920 11 C -0.186 4.186 12 C -0.109 4.109 13 C -0.214 4.214 14 C -0.045 4.045 15 N -0.264 5.264 16 C -0.129 4.129 17 C -0.076 4.076 18 C -0.145 4.145 19 N -0.202 5.202 20 N -0.128 5.128 21 C 0.157 3.843 22 C -0.590 4.590 23 H 0.066 0.934 24 C -0.178 4.178 25 N -0.555 5.555 26 Si 0.793 3.207 27 H -0.202 1.202 28 H -0.194 1.194 29 H -0.194 1.194 30 H 0.113 0.887 31 H 0.080 0.920 32 H 0.125 0.875 33 H 0.204 0.796 34 H 0.268 0.732 35 H 0.283 0.717 36 H 0.075 0.925 37 H 0.091 0.909 38 H 0.074 0.926 39 H 0.130 0.870 40 H 0.115 0.885 41 H 0.097 0.903 42 H 0.090 0.910 43 H 0.093 0.907 44 H 0.050 0.950 45 H 0.105 0.895 46 H 0.080 0.920 47 H 0.097 0.903 48 H 0.090 0.910 49 H 0.039 0.961 50 H 0.071 0.929 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 7.659 25.487 1.382 26.648 hybrid contribution -1.064 -0.573 0.663 1.379 sum 6.595 24.914 2.045 25.853 Atomic orbital electron populations 1.20524 0.85391 1.04421 1.04197 1.21806 0.96644 0.86493 0.98856 1.21479 0.88858 1.00467 1.23019 1.19192 0.88184 0.89205 1.00123 1.40754 1.06702 1.01389 1.76529 1.19963 0.81754 0.82895 0.89432 1.84775 1.32156 1.79020 1.36611 1.72523 1.25294 1.06491 1.30059 1.20433 0.98946 0.85227 0.93787 0.91968 1.21695 1.00102 1.00799 0.95976 1.20908 0.96447 0.97062 0.96519 1.22870 0.99883 1.00054 0.98588 1.21105 0.88311 1.00981 0.94130 1.62764 1.04190 1.07816 1.51610 1.22460 0.99689 0.96464 0.94242 1.22246 1.01225 0.89414 0.94738 1.20846 0.94209 1.02195 0.97275 1.77238 1.00157 1.10421 1.32382 1.48761 1.01687 1.07559 1.54776 1.19198 0.94829 0.72752 0.97551 1.21438 1.47345 0.98358 0.91887 0.93372 1.25711 0.94046 0.95974 1.02109 1.69994 1.45121 1.07396 1.33025 0.85395 0.78207 0.78253 0.78884 1.20242 1.19439 1.19378 0.88667 0.92036 0.87454 0.79621 0.73217 0.71668 0.92527 0.90919 0.92634 0.87038 0.88513 0.90266 0.90958 0.90689 0.95010 0.89485 0.91975 0.90291 0.91042 0.96094 0.92871 0.91754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.54 9.89 71.23 0.70 -1.83 16 2 C 0.09 3.47 6.92 41.38 0.29 3.76 16 3 C -0.31 -10.24 9.55 22.11 0.21 -10.02 16 4 C 0.29 10.68 8.12 133.33 1.08 11.76 16 5 N -0.61 -18.27 5.56 -305.67 -1.70 -19.97 16 6 C 0.57 14.44 8.55 179.58 1.54 15.98 16 7 O -0.52 -10.67 8.36 -83.84 -0.70 -11.37 16 8 N -0.60 -14.39 9.62 -448.79 -4.32 -18.71 16 9 C 0.13 2.44 3.04 44.24 0.13 2.58 16 10 H 0.06 1.11 6.25 -2.39 -0.01 1.10 16 11 C -0.13 -2.07 9.39 71.98 0.68 -1.40 16 12 C -0.11 -2.11 4.30 -15.39 -0.07 -2.18 16 13 C -0.19 -3.48 9.10 26.69 0.24 -3.24 16 14 C 0.08 1.36 5.94 85.39 0.51 1.86 16 15 N -0.54 -9.32 5.29 -927.18 -4.90 -14.22 16 16 C 0.02 0.27 8.91 127.69 1.14 1.40 16 17 C 0.05 0.95 6.06 86.27 0.52 1.48 16 18 C -0.11 -2.05 4.73 29.75 0.14 -1.90 16 19 N -0.37 -16.95 12.59 -54.45 -0.69 -17.63 16 20 N -0.35 -15.98 3.59 -338.45 -1.22 -17.20 16 21 C 0.28 14.30 5.81 85.64 0.50 14.80 16 22 C -0.55 -30.68 9.39 25.60 0.24 -30.44 16 23 H 0.05 2.78 7.81 -2.91 -0.02 2.75 16 24 C 0.02 1.23 5.46 84.65 0.46 1.70 16 25 N -0.92 -51.48 13.29 21.44 0.28 -51.19 16 26 Si 0.97 43.00 29.54 68.60 2.03 45.03 16 27 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 28 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 29 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 30 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 31 H 0.06 2.08 7.71 -2.38 -0.02 2.06 16 32 H 0.11 2.41 8.14 -2.39 -0.02 2.39 16 33 H 0.19 4.81 5.55 -2.91 -0.02 4.80 16 34 H 0.43 12.41 8.94 -92.71 -0.83 11.58 16 35 H 0.42 4.77 8.90 -74.06 -0.66 4.11 16 36 H 0.06 1.00 7.74 -2.39 -0.02 0.98 16 37 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 38 H 0.05 0.88 8.14 -2.38 -0.02 0.86 16 39 H 0.11 1.86 7.64 -2.91 -0.02 1.84 16 40 H 0.10 1.27 7.98 -2.39 -0.02 1.25 16 41 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.07 0.88 8.14 -2.39 -0.02 0.87 16 43 H 0.07 0.87 8.05 -2.38 -0.02 0.85 16 44 H 0.03 0.46 5.68 -2.38 -0.01 0.45 16 45 H 0.09 1.40 8.14 -2.38 -0.02 1.38 16 46 H 0.06 1.30 8.09 -2.39 -0.02 1.28 16 47 H 0.08 1.37 6.85 -2.39 -0.02 1.35 16 48 H 0.07 1.64 7.64 -2.39 -0.02 1.62 16 49 H 0.02 1.19 8.14 -2.39 -0.02 1.17 16 50 H 0.05 2.71 7.65 -2.39 -0.02 2.69 16 51 H 0.27 14.33 8.31 -92.70 -0.77 13.56 16 Total: -1.00 -67.17 410.23 -3.43 -70.59 By element: Atomic # 1 Polarization: 30.90 SS G_CDS: -0.53 Total: 30.37 kcal Atomic # 6 Polarization: -4.03 SS G_CDS: 8.32 Total: 4.29 kcal Atomic # 7 Polarization: -126.38 SS G_CDS: -12.54 Total: -138.91 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: -0.70 Total: -11.37 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Total: -67.17 -3.43 -70.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330777439.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.113 kcal (2) G-P(sol) polarization free energy of solvation -67.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds