Wall clock time and date at job start Wed Apr 1 2020 06:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 C 1.50696 * 109.47354 * 2 1 4 4 C 1.38119 * 120.40321 * 125.00073 * 3 2 1 5 5 C 1.39618 * 118.33604 * 179.97438 * 4 3 2 6 6 N 1.38540 * 120.53165 * 179.97438 * 5 4 3 7 7 C 1.46847 * 110.99907 * 303.95333 * 6 5 4 8 8 C 1.53042 * 109.52257 * 185.84009 * 7 6 5 9 9 C 1.53119 * 109.27894 * 300.81888 * 8 7 6 10 10 C 1.53125 * 109.15800 * 57.65569 * 9 8 7 11 11 H 1.08996 * 109.50061 * 62.32533 * 10 9 8 12 12 N 1.46502 * 109.50138 * 182.40346 * 10 9 8 13 13 C 1.37333 * 120.00021 * 274.92144 * 12 10 9 14 14 O 1.35101 * 120.00193 * 0.02562 * 13 12 10 15 15 N 1.30104 * 120.00135 * 180.02562 * 13 12 10 16 16 C 1.46499 * 119.99974 * 179.97438 * 15 13 12 17 17 C 1.53000 * 109.46840 * 115.00275 * 16 15 13 18 18 C 1.50703 * 109.46912 * 179.97438 * 17 16 15 19 19 H 1.08001 * 119.99776 * 0.02562 * 18 17 16 20 20 C 1.37877 * 120.00001 * 179.97438 * 18 17 16 21 21 N 1.31512 * 119.99923 * 179.97438 * 20 18 17 22 22 Si 1.86804 * 120.00006 * 0.02562 * 20 18 17 23 23 H 1.48497 * 109.46794 * 89.99626 * 22 20 18 24 24 H 1.48502 * 109.47140 * 209.99610 * 22 20 18 25 25 H 1.48501 * 109.46982 * 329.99723 * 22 20 18 26 26 C 1.46840 * 110.99902 * 68.20485 * 6 5 4 27 27 N 1.32994 * 118.93937 * 0.25174 * 5 4 3 28 28 C 1.31751 * 120.68145 * 359.49124 * 27 5 4 29 29 N 1.31795 * 121.83507 * 0.52210 * 28 27 5 30 30 H 1.09003 * 109.47225 * 59.99748 * 1 2 3 31 31 H 1.09002 * 109.47648 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47364 * 299.99598 * 1 2 3 33 33 H 1.09007 * 109.47371 * 240.00019 * 2 1 3 34 34 H 1.09003 * 109.47225 * 120.00251 * 2 1 3 35 35 H 1.07999 * 120.82843 * 359.95657 * 4 3 2 36 36 H 1.09003 * 109.46401 * 65.82750 * 7 6 5 37 37 H 1.08998 * 109.46352 * 305.85551 * 7 6 5 38 38 H 1.09007 * 109.50127 * 180.87966 * 8 7 6 39 39 H 1.09000 * 109.50427 * 60.76546 * 8 7 6 40 40 H 1.08998 * 109.51993 * 297.75311 * 9 8 7 41 41 H 1.08991 * 109.57649 * 177.58890 * 9 8 7 42 42 H 0.96993 * 119.99860 * 94.92420 * 12 10 9 43 43 H 0.96705 * 113.99745 * 0.02562 * 14 13 12 44 44 H 1.09002 * 109.47391 * 354.99944 * 16 15 13 45 45 H 1.09001 * 109.46813 * 235.00001 * 16 15 13 46 46 H 1.09001 * 109.47194 * 299.99493 * 17 16 15 47 47 H 1.08992 * 109.47399 * 59.99666 * 17 16 15 48 48 H 0.97000 * 119.99684 * 179.97438 * 21 20 18 49 49 H 1.08999 * 109.49933 * 54.16147 * 26 6 5 50 50 H 1.09003 * 109.43416 * 294.19798 * 26 6 5 51 51 H 1.07996 * 119.08241 * 180.26602 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9095 1.8520 0.9758 5 6 3.3478 3.1769 0.9342 6 7 4.2274 3.6576 1.8906 7 6 3.6907 3.4643 3.2437 8 6 4.6164 4.1344 4.2617 9 6 6.0147 3.5199 4.1546 10 6 6.5309 3.6918 2.7232 11 1 6.6170 4.7536 2.4926 12 7 7.8447 3.0558 2.5974 13 6 8.9786 3.7472 2.9470 14 8 8.8826 5.0137 3.4075 15 7 10.1454 3.1826 2.8348 16 6 11.3550 3.9203 3.2073 17 6 12.0157 3.2427 4.4094 18 6 13.2604 4.0012 4.7921 19 1 13.5508 4.8791 4.2341 20 6 14.0278 3.5751 5.8554 21 7 15.1143 4.2368 6.1891 22 14 13.5251 2.0571 6.8211 23 1 14.1467 0.8543 6.2112 24 1 13.9822 2.1913 8.2276 25 1 12.0468 1.9191 6.7920 26 6 5.5499 3.0353 1.7493 27 7 2.9031 3.9718 -0.0349 28 6 2.0701 3.5166 -0.9485 29 7 1.6380 2.2716 -0.9368 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 3.2476 1.1811 1.7517 36 1 3.6250 2.3979 3.4595 37 1 2.6978 3.9095 3.3076 38 1 4.2259 3.9774 5.2672 39 1 4.6717 5.2032 4.0550 40 1 5.9660 2.4589 4.3992 41 1 6.6888 4.0230 4.8477 42 1 7.9136 2.1465 2.2671 43 1 7.9760 5.3468 3.4561 44 1 11.0899 4.9450 3.4681 45 1 12.0494 3.9274 2.3671 46 1 11.3214 3.2357 5.2496 47 1 12.2808 2.2182 4.1486 48 1 15.6540 3.9372 6.9374 49 1 5.9077 3.1689 0.7284 50 1 5.4754 1.9707 1.9713 51 1 1.7287 4.1834 -1.7264 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330821244.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:14:11 Heat of formation + Delta-G solvation = 6.323942 kcal Electronic energy + Delta-G solvation = -29898.028615 eV Core-core repulsion = 25831.748812 eV Total energy + Delta-G solvation = -4066.279802 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.41820 -41.03126 -39.68226 -36.67263 -36.25937 -35.84035 -34.79083 -34.12979 -32.47208 -32.02522 -31.33241 -30.07859 -26.64373 -26.55612 -25.58387 -24.56701 -23.95834 -22.78260 -22.09793 -21.75707 -21.07939 -19.82209 -19.07467 -18.81587 -18.25161 -17.21534 -16.63061 -16.48499 -16.43638 -16.28128 -16.04724 -15.73639 -15.51923 -15.27592 -15.04460 -14.97023 -14.80969 -14.71299 -14.54198 -14.51632 -14.37700 -13.65338 -13.56175 -13.28656 -13.07793 -12.56350 -12.49834 -12.42539 -12.27074 -12.20926 -12.10658 -11.93164 -11.89953 -11.79391 -11.71846 -11.47900 -11.31654 -11.00414 -10.79466 -10.57603 -10.51129 -10.32645 -9.60181 -9.02002 -8.31066 -6.35524 -0.21512 -0.02831 1.33381 1.35650 1.49168 1.69947 1.78427 2.33271 2.35645 2.65303 3.01495 3.03645 3.05247 3.31515 3.49951 3.55906 3.69962 3.86489 3.96212 4.05256 4.06534 4.10889 4.21665 4.32959 4.37946 4.40799 4.47170 4.50728 4.57345 4.62629 4.70604 4.73571 4.78140 4.79803 4.99795 5.01333 5.02330 5.09823 5.10751 5.15407 5.23630 5.34419 5.38117 5.42660 5.49841 5.62732 5.69973 5.77000 6.17391 6.24969 6.32798 6.70038 6.93951 7.10683 7.27711 7.39563 8.85696 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.020603 B = 0.001782 C = 0.001758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.692181 B =15705.132049 C =15925.716776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.077 4.077 3 C 0.180 3.820 4 C -0.249 4.249 5 C 0.351 3.649 6 N -0.505 5.505 7 C 0.062 3.938 8 C -0.106 4.106 9 C -0.139 4.139 10 C 0.152 3.848 11 H 0.092 0.908 12 N -0.717 5.717 13 C 0.562 3.438 14 O -0.518 6.518 15 N -0.635 5.635 16 C 0.100 3.900 17 C 0.008 3.992 18 C -0.536 4.536 19 H 0.032 0.968 20 C 0.007 3.993 21 N -0.948 5.948 22 Si 0.956 3.044 23 H -0.264 1.264 24 H -0.276 1.276 25 H -0.256 1.256 26 C 0.074 3.926 27 N -0.535 5.535 28 C 0.304 3.696 29 N -0.538 5.538 30 H 0.053 0.947 31 H 0.077 0.923 32 H 0.048 0.952 33 H 0.094 0.906 34 H 0.103 0.897 35 H 0.166 0.834 36 H 0.061 0.939 37 H 0.080 0.920 38 H 0.095 0.905 39 H 0.076 0.924 40 H 0.077 0.923 41 H 0.066 0.934 42 H 0.421 0.579 43 H 0.406 0.594 44 H 0.030 0.970 45 H 0.051 0.949 46 H 0.006 0.994 47 H 0.015 0.985 48 H 0.268 0.732 49 H 0.076 0.924 50 H 0.069 0.931 51 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -39.116 -8.215 -10.225 41.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.115 4.115 3 C 0.034 3.966 4 C -0.274 4.274 5 C 0.113 3.887 6 N -0.228 5.228 7 C -0.064 4.064 8 C -0.145 4.145 9 C -0.178 4.178 10 C 0.047 3.953 11 H 0.110 0.890 12 N -0.369 5.369 13 C 0.248 3.752 14 O -0.314 6.314 15 N -0.385 5.385 16 C -0.030 4.030 17 C -0.030 4.030 18 C -0.574 4.574 19 H 0.050 0.950 20 C -0.190 4.190 21 N -0.588 5.588 22 Si 0.779 3.221 23 H -0.189 1.189 24 H -0.202 1.202 25 H -0.180 1.180 26 C -0.053 4.053 27 N -0.251 5.251 28 C 0.016 3.984 29 N -0.254 5.254 30 H 0.072 0.928 31 H 0.096 0.904 32 H 0.068 0.932 33 H 0.112 0.888 34 H 0.122 0.878 35 H 0.184 0.816 36 H 0.080 0.920 37 H 0.098 0.902 38 H 0.113 0.887 39 H 0.095 0.905 40 H 0.095 0.905 41 H 0.085 0.915 42 H 0.260 0.740 43 H 0.264 0.736 44 H 0.049 0.951 45 H 0.069 0.931 46 H 0.025 0.975 47 H 0.033 0.967 48 H 0.077 0.923 49 H 0.095 0.905 50 H 0.087 0.913 51 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -38.321 -7.484 -10.973 40.557 hybrid contribution 0.119 -0.695 1.151 1.350 sum -38.202 -8.179 -9.822 40.284 Atomic orbital electron populations 1.21634 0.93404 1.02918 1.01892 1.20703 0.97494 0.88230 1.05026 1.22095 0.89371 0.97229 0.87872 1.23418 1.02513 0.98158 1.03350 1.19922 0.90586 0.87983 0.90251 1.58279 1.01502 1.59830 1.03204 1.22318 0.98842 1.00684 0.84522 1.21536 0.93007 1.00867 0.99050 1.22196 0.97428 1.02906 0.95286 1.20955 0.80545 0.98186 0.95634 0.89004 1.44308 1.01395 1.18193 1.72971 1.20823 0.88653 0.79147 0.86610 1.85275 1.36542 1.27630 1.82002 1.72558 0.96488 1.33284 1.36192 1.21217 0.90085 0.94953 0.96776 1.19376 0.93865 0.95850 0.93921 1.21418 1.08680 1.12382 1.14931 0.94977 1.25988 0.94435 1.00520 0.98042 1.70062 1.16746 1.42330 1.29692 0.85578 0.79658 0.79190 0.77675 1.18915 1.20174 1.18026 1.22086 0.86178 0.97234 0.99845 1.68129 1.13032 1.39609 1.04322 1.25431 0.88164 0.90395 0.94453 1.68291 1.26204 1.04928 1.25930 0.92753 0.90370 0.93237 0.88803 0.87820 0.81633 0.92040 0.90168 0.88658 0.90495 0.90450 0.91493 0.74023 0.73587 0.95138 0.93058 0.97521 0.96669 0.92302 0.90512 0.91327 0.76346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.96 9.78 71.98 0.70 -0.26 16 2 C -0.08 -0.51 6.36 29.84 0.19 -0.32 16 3 C 0.18 2.14 6.20 42.42 0.26 2.40 16 4 C -0.25 -2.69 8.47 22.57 0.19 -2.50 16 5 C 0.35 5.13 5.71 133.16 0.76 5.89 16 6 N -0.50 -6.25 4.70 -701.44 -3.29 -9.54 16 7 C 0.06 0.51 5.06 86.33 0.44 0.95 16 8 C -0.11 -0.80 6.09 30.65 0.19 -0.62 16 9 C -0.14 -1.47 5.51 30.68 0.17 -1.30 16 10 C 0.15 1.92 2.32 45.04 0.10 2.02 16 11 H 0.09 1.16 6.62 -2.39 -0.02 1.14 16 12 N -0.72 -13.85 5.18 -441.33 -2.29 -16.14 16 13 C 0.56 17.11 8.76 179.63 1.57 18.68 16 14 O -0.52 -15.12 11.99 -83.77 -1.00 -16.13 16 15 N -0.64 -25.52 10.61 -465.97 -4.94 -30.46 16 16 C 0.10 4.80 6.27 86.38 0.54 5.35 16 17 C 0.01 0.43 4.37 29.85 0.13 0.56 16 18 C -0.54 -33.72 9.66 25.60 0.25 -33.47 16 19 H 0.03 2.19 7.99 -2.91 -0.02 2.17 16 20 C 0.01 0.44 5.47 84.65 0.46 0.91 16 21 N -0.95 -61.84 13.96 21.45 0.30 -61.54 16 22 Si 0.96 47.25 27.47 68.60 1.88 49.14 16 23 H -0.26 -12.49 7.11 99.48 0.71 -11.78 16 24 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 25 H -0.26 -12.15 6.54 99.48 0.65 -11.50 16 26 C 0.07 0.84 4.69 86.33 0.40 1.24 16 27 N -0.53 -9.51 10.47 -197.62 -2.07 -11.58 16 28 C 0.30 4.47 12.28 180.90 2.22 6.69 16 29 N -0.54 -8.07 10.03 -188.34 -1.89 -9.96 16 30 H 0.05 0.53 7.98 -2.39 -0.02 0.51 16 31 H 0.08 0.31 8.14 -2.39 -0.02 0.29 16 32 H 0.05 0.37 8.14 -2.39 -0.02 0.35 16 33 H 0.09 0.58 8.14 -2.38 -0.02 0.56 16 34 H 0.10 0.26 7.93 -2.39 -0.02 0.24 16 35 H 0.17 0.94 7.21 -2.91 -0.02 0.92 16 36 H 0.06 0.34 7.20 -2.39 -0.02 0.32 16 37 H 0.08 0.72 8.10 -2.39 -0.02 0.70 16 38 H 0.10 0.51 8.14 -2.38 -0.02 0.49 16 39 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 40 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.07 0.89 7.88 -2.39 -0.02 0.88 16 42 H 0.42 7.53 8.72 -92.71 -0.81 6.73 16 43 H 0.41 7.18 6.14 -74.05 -0.45 6.73 16 44 H 0.03 1.49 6.74 -2.39 -0.02 1.47 16 45 H 0.05 2.53 8.14 -2.39 -0.02 2.51 16 46 H 0.01 0.35 7.20 -2.39 -0.02 0.33 16 47 H 0.01 0.81 7.57 -2.39 -0.02 0.79 16 48 H 0.27 16.15 8.31 -92.71 -0.77 15.38 16 49 H 0.08 1.09 8.10 -2.39 -0.02 1.07 16 50 H 0.07 0.57 7.83 -2.39 -0.02 0.55 16 51 H 0.22 1.90 8.06 -2.91 -0.02 1.88 16 Total: -1.00 -83.05 408.74 -5.09 -88.14 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -0.37 Total: 11.85 kcal Atomic # 6 Polarization: -2.36 SS G_CDS: 8.59 Total: 6.23 kcal Atomic # 7 Polarization: -125.04 SS G_CDS: -14.18 Total: -139.22 kcal Atomic # 8 Polarization: -15.12 SS G_CDS: -1.00 Total: -16.13 kcal Atomic # 14 Polarization: 47.25 SS G_CDS: 1.88 Total: 49.14 kcal Total: -83.05 -5.09 -88.14 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330821244.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.459 kcal (2) G-P(sol) polarization free energy of solvation -83.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.135 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds