Wall clock time and date at job start Wed Apr 1 2020 04:38:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38123 * 120.40292 * 2 1 4 4 C 1.39626 * 118.33130 * 180.19498 * 3 2 1 5 5 N 1.38549 * 120.52898 * 179.80153 * 4 3 2 6 6 C 1.46898 * 110.99804 * 179.72336 * 5 4 3 7 7 C 1.53240 * 109.33809 * 187.25803 * 6 5 4 8 8 N 1.47087 * 108.51775 * 306.16751 * 7 6 5 9 9 C 1.37335 * 120.87693 * 231.18994 * 8 7 6 10 10 O 1.35094 * 120.00661 * 4.90297 * 9 8 7 11 11 N 1.30104 * 119.99795 * 184.90337 * 9 8 7 12 12 C 1.46496 * 120.00331 * 179.97438 * 11 9 8 13 13 C 1.50696 * 109.47139 * 114.99864 * 12 11 9 14 14 H 1.08003 * 120.00148 * 0.02562 * 13 12 11 15 15 C 1.37878 * 120.00102 * 180.02562 * 13 12 11 16 16 N 1.31505 * 120.00222 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 120.00014 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47419 * 59.99741 * 17 15 13 19 19 H 1.48495 * 109.47416 * 179.97438 * 17 15 13 20 20 H 1.48505 * 109.47177 * 299.99775 * 17 15 13 21 21 C 1.47070 * 118.23580 * 51.46057 * 8 7 6 22 22 C 1.46895 * 110.99943 * 304.02594 * 5 4 3 23 23 N 1.32995 * 118.93886 * 359.53101 * 4 3 2 24 24 C 1.31742 * 120.68481 * 0.24926 * 23 4 3 25 25 C 1.50697 * 119.08156 * 180.02562 * 24 23 4 26 26 C 1.53004 * 109.47072 * 119.99965 * 25 24 23 27 27 C 1.53007 * 109.47096 * 239.99670 * 25 24 23 28 28 N 1.31794 * 121.83599 * 359.97438 * 24 23 4 29 29 H 1.09000 * 109.46837 * 270.28393 * 1 2 3 30 30 H 1.09003 * 109.46974 * 30.28008 * 1 2 3 31 31 H 1.08991 * 109.47419 * 150.28005 * 1 2 3 32 32 H 1.07994 * 120.83027 * 359.97438 * 3 2 1 33 33 H 1.08991 * 109.49501 * 67.29495 * 6 5 4 34 34 H 1.09000 * 109.48970 * 307.21304 * 6 5 4 35 35 H 1.09000 * 109.62575 * 186.46140 * 7 6 5 36 36 H 1.09000 * 109.63416 * 65.87499 * 7 6 5 37 37 H 0.96705 * 113.99621 * 354.73114 * 10 9 8 38 38 H 1.09000 * 109.47680 * 235.00184 * 12 11 9 39 39 H 1.09005 * 109.47273 * 355.00390 * 12 11 9 40 40 H 0.96999 * 120.00445 * 179.97438 * 16 15 13 41 41 H 1.09007 * 109.63232 * 68.25062 * 21 8 7 42 42 H 1.09007 * 109.63091 * 188.83011 * 21 8 7 43 43 H 1.09006 * 109.49271 * 292.70452 * 22 5 4 44 44 H 1.09001 * 109.49404 * 52.75902 * 22 5 4 45 45 H 1.09000 * 109.47208 * 0.02562 * 25 24 23 46 46 H 1.09000 * 109.46993 * 179.97438 * 26 25 24 47 47 H 1.08995 * 109.47309 * 299.99776 * 26 25 24 48 48 H 1.08999 * 109.47477 * 60.00150 * 26 25 24 49 49 H 1.09001 * 109.46387 * 60.00447 * 27 25 24 50 50 H 1.09000 * 109.47160 * 179.97438 * 27 25 24 51 51 H 1.08996 * 109.46836 * 299.99936 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2060 1.1913 0.0000 4 6 3.6013 1.1408 -0.0042 5 7 4.3478 2.3080 -0.0085 6 6 5.7868 2.0126 -0.0058 7 6 6.5721 3.3164 0.1720 8 7 6.1348 4.2695 -0.8593 9 6 7.0488 4.9141 -1.6564 10 8 8.3606 4.6037 -1.5671 11 7 6.6514 5.8236 -2.4974 12 6 7.6263 6.5116 -3.3473 13 6 7.3665 6.1662 -4.7909 14 1 6.5559 5.5010 -5.0496 15 6 8.1636 6.6993 -5.7816 16 7 9.1503 7.5097 -5.4668 17 14 7.8411 6.2717 -7.5712 18 1 6.4695 6.7024 -7.9437 19 1 8.8294 6.9690 -8.4327 20 1 7.9675 4.8041 -7.7600 21 6 4.6932 4.5185 -1.0103 22 6 3.9814 3.1630 -1.1455 23 7 4.2024 -0.0455 0.0015 24 6 3.4956 -1.1573 0.0061 25 6 4.2140 -2.4820 0.0131 26 6 3.8218 -3.2682 1.2657 27 6 3.8243 -3.2801 -1.2328 28 7 2.1777 -1.1432 0.0057 29 1 -0.3633 0.0051 1.0277 30 1 -0.3633 0.8875 -0.5182 31 1 -0.3634 -0.8924 -0.5094 32 1 1.6863 2.1380 -0.0004 33 1 6.0643 1.5469 -0.9513 34 1 6.0172 1.3343 0.8157 35 1 7.6384 3.1196 0.0603 36 1 6.3749 3.7308 1.1607 37 1 8.5693 3.9768 -0.8610 38 1 7.5329 7.5888 -3.2089 39 1 8.6333 6.1962 -3.0738 40 1 9.7114 7.8844 -6.1637 41 1 4.3188 5.0462 -0.1330 42 1 4.5166 5.1170 -1.9041 43 1 4.2841 2.6812 -2.0752 44 1 2.9026 3.3185 -1.1508 45 1 5.2906 -2.3115 0.0138 46 1 4.3411 -4.2266 1.2705 47 1 4.0994 -2.6997 2.1532 48 1 2.7452 -3.4388 1.2654 49 1 4.1038 -2.7199 -2.1251 50 1 4.3443 -4.2381 -1.2280 51 1 2.7478 -3.4506 -1.2330 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331158550.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:27 Heat of formation + Delta-G solvation = 48.518875 kcal Electronic energy + Delta-G solvation = -30669.038174 eV Core-core repulsion = 26604.588082 eV Total energy + Delta-G solvation = -4064.450093 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.63162 -39.72937 -38.11271 -36.05569 -35.20509 -33.86235 -33.44224 -32.17148 -31.16814 -31.15060 -28.87914 -27.69437 -27.46501 -26.06884 -25.01590 -23.62467 -22.94652 -22.14965 -20.94057 -20.54760 -19.52498 -18.51802 -17.81207 -16.85128 -16.14887 -15.83670 -15.65705 -15.58780 -15.37653 -14.98897 -14.86411 -14.51310 -14.40888 -14.32904 -13.70267 -13.69679 -13.59626 -13.30410 -12.99702 -12.82200 -12.73112 -12.45182 -12.38055 -12.18760 -12.09943 -11.79925 -11.58971 -11.52678 -11.48906 -11.28291 -11.22971 -11.01497 -10.85835 -10.70936 -10.66571 -10.00323 -9.93348 -9.73049 -9.47602 -9.17579 -8.70479 -8.56649 -8.03655 -7.16514 -5.90640 -3.93245 0.71751 0.86991 2.88011 3.17154 3.38076 3.40790 3.43610 3.49102 3.59247 3.63825 3.82701 4.34836 4.47108 4.53013 4.61629 4.64718 4.73373 4.81822 4.83100 4.86475 4.90573 5.01596 5.05678 5.16704 5.18830 5.26644 5.31258 5.34692 5.38391 5.42481 5.45154 5.51804 5.54390 5.58535 5.66558 5.68770 5.80295 5.90916 5.93033 5.99588 6.09374 6.19776 6.30184 6.69341 6.87245 6.96231 7.27973 7.65284 7.70486 7.96506 8.03969 8.43565 8.56349 9.06025 9.32630 9.71468 11.18157 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.013094 B = 0.002275 C = 0.002223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2137.904886 B =12304.075478 C =12593.311077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.190 3.810 3 C -0.251 4.251 4 C 0.365 3.635 5 N -0.470 5.470 6 C 0.053 3.947 7 C 0.122 3.878 8 N -0.635 5.635 9 C 0.518 3.482 10 O -0.501 6.501 11 N -0.572 5.572 12 C 0.201 3.799 13 C -0.502 4.502 14 H 0.056 0.944 15 C 0.054 3.946 16 N -0.899 5.899 17 Si 0.898 3.102 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.279 1.279 21 C 0.149 3.851 22 C 0.044 3.956 23 N -0.559 5.559 24 C 0.354 3.646 25 C -0.026 4.026 26 C -0.138 4.138 27 C -0.140 4.140 28 N -0.537 5.537 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.147 0.853 33 H 0.059 0.941 34 H 0.097 0.903 35 H 0.082 0.918 36 H 0.074 0.926 37 H 0.373 0.627 38 H 0.032 0.968 39 H 0.011 0.989 40 H 0.261 0.739 41 H 0.067 0.933 42 H 0.115 0.885 43 H 0.057 0.943 44 H 0.094 0.906 45 H 0.094 0.906 46 H 0.064 0.936 47 H 0.052 0.948 48 H 0.066 0.934 49 H 0.053 0.947 50 H 0.064 0.936 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.775 -20.274 17.192 30.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.046 3.954 3 C -0.276 4.276 4 C 0.125 3.875 5 N -0.187 5.187 6 C -0.075 4.075 7 C -0.002 4.002 8 N -0.369 5.369 9 C 0.205 3.795 10 O -0.294 6.294 11 N -0.317 5.317 12 C 0.074 3.926 13 C -0.541 4.541 14 H 0.074 0.926 15 C -0.147 4.147 16 N -0.539 5.539 17 Si 0.726 3.274 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.204 1.204 21 C 0.025 3.975 22 C -0.083 4.083 23 N -0.280 5.280 24 C 0.085 3.915 25 C -0.047 4.047 26 C -0.197 4.197 27 C -0.198 4.198 28 N -0.255 5.255 29 H 0.102 0.898 30 H 0.099 0.901 31 H 0.100 0.900 32 H 0.164 0.836 33 H 0.077 0.923 34 H 0.115 0.885 35 H 0.100 0.900 36 H 0.093 0.907 37 H 0.227 0.773 38 H 0.050 0.950 39 H 0.029 0.971 40 H 0.070 0.930 41 H 0.085 0.915 42 H 0.133 0.867 43 H 0.075 0.925 44 H 0.112 0.888 45 H 0.112 0.888 46 H 0.083 0.917 47 H 0.071 0.929 48 H 0.085 0.915 49 H 0.072 0.928 50 H 0.083 0.917 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -14.715 -19.853 16.745 29.851 hybrid contribution 0.598 -0.242 -0.977 1.171 sum -14.117 -20.095 15.768 29.184 Atomic orbital electron populations 1.20756 0.87830 1.04019 1.03573 1.21513 0.97386 0.87691 0.88799 1.22151 0.93797 1.00883 1.10737 1.20129 0.90466 0.88598 0.88311 1.58850 1.06827 1.11761 1.41300 1.22444 0.84501 0.97086 1.03433 1.21579 0.98176 0.88402 0.92042 1.46328 1.05341 1.47290 1.37931 1.20692 0.76791 0.91036 0.91012 1.85449 1.23748 1.64137 1.56077 1.72442 1.35860 1.11567 1.11782 1.19336 0.89290 0.93344 0.90601 1.21147 1.14408 1.27860 0.90696 0.92574 1.24985 0.95209 0.95378 0.99114 1.69951 1.18744 1.32094 1.33096 0.86570 0.77921 0.78386 0.84547 1.20223 1.21279 1.20437 1.21549 0.77967 0.93822 1.04130 1.22957 1.01441 0.94192 0.89683 1.68219 1.41629 0.98036 1.20084 1.22903 0.86509 0.93497 0.88572 1.19962 0.99397 0.88041 0.97281 1.21772 1.02622 0.99467 0.95795 1.21778 1.02618 0.99441 0.95944 1.68016 1.09382 1.29999 1.18081 0.89754 0.90113 0.89985 0.83564 0.92301 0.88464 0.90040 0.90743 0.77327 0.95044 0.97061 0.92959 0.91484 0.86678 0.92511 0.88784 0.88762 0.91671 0.92882 0.91471 0.92809 0.91651 0.91446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.63 10.21 36.00 0.37 -0.26 16 2 C 0.19 1.82 6.82 -82.33 -0.56 1.26 16 3 C -0.25 -2.47 8.93 -39.11 -0.35 -2.82 16 4 C 0.36 4.21 6.40 -154.77 -0.99 3.22 16 5 N -0.47 -5.20 4.65 -172.44 -0.80 -6.00 16 6 C 0.05 0.57 4.84 -3.70 -0.02 0.55 16 7 C 0.12 1.28 6.59 -3.60 -0.02 1.26 16 8 N -0.64 -9.31 3.07 -174.77 -0.54 -9.84 16 9 C 0.52 10.30 8.55 -88.57 -0.76 9.54 16 10 O -0.50 -9.60 11.99 -16.99 -0.20 -9.81 16 11 N -0.57 -13.93 9.17 -63.71 -0.58 -14.51 16 12 C 0.20 5.83 6.09 -5.20 -0.03 5.80 16 13 C -0.50 -15.35 9.39 -34.44 -0.32 -15.68 16 14 H 0.06 1.71 7.81 -52.48 -0.41 1.30 16 15 C 0.05 1.63 5.46 -17.82 -0.10 1.53 16 16 N -0.90 -28.11 13.29 55.43 0.74 -27.38 16 17 Si 0.90 22.74 29.54 -169.99 -5.02 17.71 16 18 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 20 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 21 C 0.15 1.96 6.63 -3.37 -0.02 1.93 16 22 C 0.04 0.49 5.44 -3.46 -0.02 0.47 16 23 N -0.56 -6.79 8.70 -9.96 -0.09 -6.87 16 24 C 0.35 3.98 6.34 -157.24 -1.00 2.98 16 25 C -0.03 -0.23 3.25 -91.77 -0.30 -0.53 16 26 C -0.14 -1.01 9.09 37.16 0.34 -0.67 16 27 C -0.14 -1.10 9.09 37.16 0.34 -0.76 16 28 N -0.54 -5.88 9.74 -7.07 -0.07 -5.94 16 29 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.08 0.37 8.10 -51.93 -0.42 -0.06 16 31 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.15 1.13 7.24 -52.49 -0.38 0.75 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.10 0.98 7.67 -51.93 -0.40 0.58 16 35 H 0.08 0.69 5.59 -51.93 -0.29 0.40 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.37 4.73 6.17 45.56 0.28 5.01 16 38 H 0.03 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.01 0.35 6.74 -51.93 -0.35 0.00 16 40 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 41 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.12 1.80 7.01 -51.93 -0.36 1.44 16 43 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.09 0.85 6.71 -51.93 -0.35 0.50 16 45 H 0.09 0.81 8.09 -51.93 -0.42 0.39 16 46 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 47 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 48 H 0.07 0.52 8.01 -51.93 -0.42 0.11 16 49 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 50 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 51 H 0.07 0.56 8.01 -51.93 -0.42 0.14 16 LS Contribution 409.60 15.07 6.17 6.17 Total: -1.00 -37.04 409.60 -11.56 -48.59 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -7.72 Total: 0.03 kcal Atomic # 6 Polarization: 11.29 SS G_CDS: -3.45 Total: 7.84 kcal Atomic # 7 Polarization: -69.21 SS G_CDS: -1.34 Total: -70.55 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: -0.20 Total: -9.81 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -5.02 Total: 17.71 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -37.04 -11.56 -48.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331158550.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.114 kcal (2) G-P(sol) polarization free energy of solvation -37.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds