Wall clock time and date at job start Wed Apr 1 2020 04:38:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38123 * 120.40292 * 2 1 4 4 C 1.39626 * 118.33130 * 180.19498 * 3 2 1 5 5 N 1.38549 * 120.52898 * 179.80153 * 4 3 2 6 6 C 1.46898 * 110.99804 * 179.72336 * 5 4 3 7 7 C 1.53240 * 109.33809 * 187.25803 * 6 5 4 8 8 N 1.47087 * 108.51775 * 306.16751 * 7 6 5 9 9 C 1.37335 * 120.87693 * 231.18994 * 8 7 6 10 10 O 1.35094 * 120.00661 * 4.90297 * 9 8 7 11 11 N 1.30104 * 119.99795 * 184.90337 * 9 8 7 12 12 C 1.46496 * 120.00331 * 179.97438 * 11 9 8 13 13 C 1.50696 * 109.47139 * 114.99864 * 12 11 9 14 14 H 1.08003 * 120.00148 * 0.02562 * 13 12 11 15 15 C 1.37878 * 120.00102 * 180.02562 * 13 12 11 16 16 N 1.31505 * 120.00222 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 120.00014 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47419 * 59.99741 * 17 15 13 19 19 H 1.48495 * 109.47416 * 179.97438 * 17 15 13 20 20 H 1.48505 * 109.47177 * 299.99775 * 17 15 13 21 21 C 1.47070 * 118.23580 * 51.46057 * 8 7 6 22 22 C 1.46895 * 110.99943 * 304.02594 * 5 4 3 23 23 N 1.32995 * 118.93886 * 359.53101 * 4 3 2 24 24 C 1.31742 * 120.68481 * 0.24926 * 23 4 3 25 25 C 1.50697 * 119.08156 * 180.02562 * 24 23 4 26 26 C 1.53004 * 109.47072 * 119.99965 * 25 24 23 27 27 C 1.53007 * 109.47096 * 239.99670 * 25 24 23 28 28 N 1.31794 * 121.83599 * 359.97438 * 24 23 4 29 29 H 1.09000 * 109.46837 * 270.28393 * 1 2 3 30 30 H 1.09003 * 109.46974 * 30.28008 * 1 2 3 31 31 H 1.08991 * 109.47419 * 150.28005 * 1 2 3 32 32 H 1.07994 * 120.83027 * 359.97438 * 3 2 1 33 33 H 1.08991 * 109.49501 * 67.29495 * 6 5 4 34 34 H 1.09000 * 109.48970 * 307.21304 * 6 5 4 35 35 H 1.09000 * 109.62575 * 186.46140 * 7 6 5 36 36 H 1.09000 * 109.63416 * 65.87499 * 7 6 5 37 37 H 0.96705 * 113.99621 * 354.73114 * 10 9 8 38 38 H 1.09000 * 109.47680 * 235.00184 * 12 11 9 39 39 H 1.09005 * 109.47273 * 355.00390 * 12 11 9 40 40 H 0.96999 * 120.00445 * 179.97438 * 16 15 13 41 41 H 1.09007 * 109.63232 * 68.25062 * 21 8 7 42 42 H 1.09007 * 109.63091 * 188.83011 * 21 8 7 43 43 H 1.09006 * 109.49271 * 292.70452 * 22 5 4 44 44 H 1.09001 * 109.49404 * 52.75902 * 22 5 4 45 45 H 1.09000 * 109.47208 * 0.02562 * 25 24 23 46 46 H 1.09000 * 109.46993 * 179.97438 * 26 25 24 47 47 H 1.08995 * 109.47309 * 299.99776 * 26 25 24 48 48 H 1.08999 * 109.47477 * 60.00150 * 26 25 24 49 49 H 1.09001 * 109.46387 * 60.00447 * 27 25 24 50 50 H 1.09000 * 109.47160 * 179.97438 * 27 25 24 51 51 H 1.08996 * 109.46836 * 299.99936 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2060 1.1913 0.0000 4 6 3.6013 1.1408 -0.0042 5 7 4.3478 2.3080 -0.0085 6 6 5.7868 2.0126 -0.0058 7 6 6.5721 3.3164 0.1720 8 7 6.1348 4.2695 -0.8593 9 6 7.0488 4.9141 -1.6564 10 8 8.3606 4.6037 -1.5671 11 7 6.6514 5.8236 -2.4974 12 6 7.6263 6.5116 -3.3473 13 6 7.3665 6.1662 -4.7909 14 1 6.5559 5.5010 -5.0496 15 6 8.1636 6.6993 -5.7816 16 7 9.1503 7.5097 -5.4668 17 14 7.8411 6.2717 -7.5712 18 1 6.4695 6.7024 -7.9437 19 1 8.8294 6.9690 -8.4327 20 1 7.9675 4.8041 -7.7600 21 6 4.6932 4.5185 -1.0103 22 6 3.9814 3.1630 -1.1455 23 7 4.2024 -0.0455 0.0015 24 6 3.4956 -1.1573 0.0061 25 6 4.2140 -2.4820 0.0131 26 6 3.8218 -3.2682 1.2657 27 6 3.8243 -3.2801 -1.2328 28 7 2.1777 -1.1432 0.0057 29 1 -0.3633 0.0051 1.0277 30 1 -0.3633 0.8875 -0.5182 31 1 -0.3634 -0.8924 -0.5094 32 1 1.6863 2.1380 -0.0004 33 1 6.0643 1.5469 -0.9513 34 1 6.0172 1.3343 0.8157 35 1 7.6384 3.1196 0.0603 36 1 6.3749 3.7308 1.1607 37 1 8.5693 3.9768 -0.8610 38 1 7.5329 7.5888 -3.2089 39 1 8.6333 6.1962 -3.0738 40 1 9.7114 7.8844 -6.1637 41 1 4.3188 5.0462 -0.1330 42 1 4.5166 5.1170 -1.9041 43 1 4.2841 2.6812 -2.0752 44 1 2.9026 3.3185 -1.1508 45 1 5.2906 -2.3115 0.0138 46 1 4.3411 -4.2266 1.2705 47 1 4.0994 -2.6997 2.1532 48 1 2.7452 -3.4388 1.2654 49 1 4.1038 -2.7199 -2.1251 50 1 4.3443 -4.2381 -1.2280 51 1 2.7478 -3.4506 -1.2330 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331158550.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:25 Heat of formation + Delta-G solvation = 20.668847 kcal Electronic energy + Delta-G solvation = -30670.245842 eV Core-core repulsion = 26604.588082 eV Total energy + Delta-G solvation = -4065.657760 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.43738 -40.93660 -39.35335 -36.83098 -36.23747 -35.82098 -34.45488 -33.93910 -32.34417 -31.97374 -29.76555 -29.18631 -28.06643 -27.56216 -25.84157 -24.89654 -24.31737 -23.24991 -22.06215 -21.44162 -20.99047 -19.69191 -18.65388 -18.48426 -17.74174 -17.16223 -16.64001 -16.48241 -16.35979 -16.12792 -16.07605 -15.78007 -15.43415 -15.26517 -15.05649 -14.62525 -14.51872 -14.30518 -14.23563 -14.13810 -13.89590 -13.50429 -13.33229 -13.17498 -13.01412 -12.94217 -12.81169 -12.69023 -12.53827 -12.43297 -12.35902 -12.20189 -12.11654 -11.87701 -11.81429 -11.76486 -11.49399 -10.87478 -10.73628 -10.58065 -10.28937 -10.07512 -9.57214 -8.81296 -8.16015 -6.33217 -0.06506 0.07632 1.34981 1.40314 1.48223 1.70123 1.93443 2.23706 2.40877 2.71834 2.89037 3.04997 3.10569 3.16105 3.57668 3.77064 3.80374 3.96519 4.02036 4.06927 4.08751 4.18192 4.20387 4.25500 4.31579 4.43375 4.46196 4.63822 4.65318 4.74062 4.75762 4.80068 4.81499 4.82529 4.87801 4.93251 4.99619 5.00302 5.11633 5.24506 5.29248 5.30000 5.31775 5.41485 5.50377 5.61273 5.69500 5.87878 5.94651 6.16474 6.19509 6.75121 7.13095 7.16814 7.28633 7.61440 8.89329 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.013094 B = 0.002275 C = 0.002223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2137.904886 B =12304.075478 C =12593.311077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.182 3.818 3 C -0.251 4.251 4 C 0.345 3.655 5 N -0.466 5.466 6 C 0.061 3.939 7 C 0.120 3.880 8 N -0.626 5.626 9 C 0.540 3.460 10 O -0.519 6.519 11 N -0.617 5.617 12 C 0.221 3.779 13 C -0.528 4.528 14 H 0.049 0.951 15 C 0.000 4.000 16 N -0.933 5.933 17 Si 0.974 3.026 18 H -0.266 1.266 19 H -0.275 1.275 20 H -0.270 1.270 21 C 0.146 3.854 22 C 0.056 3.944 23 N -0.577 5.577 24 C 0.340 3.660 25 C -0.028 4.028 26 C -0.130 4.130 27 C -0.133 4.133 28 N -0.547 5.547 29 H 0.098 0.902 30 H 0.099 0.901 31 H 0.082 0.918 32 H 0.169 0.831 33 H 0.037 0.963 34 H 0.108 0.892 35 H 0.103 0.897 36 H 0.098 0.902 37 H 0.400 0.600 38 H -0.005 1.005 39 H -0.019 1.019 40 H 0.266 0.734 41 H 0.090 0.910 42 H 0.088 0.912 43 H 0.032 0.968 44 H 0.121 0.879 45 H 0.092 0.908 46 H 0.084 0.916 47 H 0.046 0.954 48 H 0.061 0.939 49 H 0.038 0.962 50 H 0.085 0.915 51 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.269 -22.134 17.928 32.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.038 3.962 3 C -0.276 4.276 4 C 0.106 3.894 5 N -0.183 5.183 6 C -0.067 4.067 7 C -0.002 4.002 8 N -0.359 5.359 9 C 0.227 3.773 10 O -0.316 6.316 11 N -0.365 5.365 12 C 0.093 3.907 13 C -0.567 4.567 14 H 0.068 0.932 15 C -0.198 4.198 16 N -0.573 5.573 17 Si 0.797 3.203 18 H -0.191 1.191 19 H -0.200 1.200 20 H -0.196 1.196 21 C 0.024 3.976 22 C -0.071 4.071 23 N -0.298 5.298 24 C 0.071 3.929 25 C -0.049 4.049 26 C -0.188 4.188 27 C -0.191 4.191 28 N -0.265 5.265 29 H 0.116 0.884 30 H 0.117 0.883 31 H 0.100 0.900 32 H 0.186 0.814 33 H 0.056 0.944 34 H 0.126 0.874 35 H 0.121 0.879 36 H 0.116 0.884 37 H 0.259 0.741 38 H 0.013 0.987 39 H -0.001 1.001 40 H 0.075 0.925 41 H 0.108 0.892 42 H 0.106 0.894 43 H 0.050 0.950 44 H 0.139 0.861 45 H 0.111 0.889 46 H 0.103 0.897 47 H 0.065 0.935 48 H 0.080 0.920 49 H 0.057 0.943 50 H 0.104 0.896 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -16.228 -21.777 17.557 32.340 hybrid contribution 1.037 0.189 -1.017 1.465 sum -15.191 -21.587 16.540 31.151 Atomic orbital electron populations 1.20856 0.85266 1.04960 1.04700 1.22145 0.99076 0.87287 0.87712 1.22424 0.93182 1.02032 1.09952 1.20349 0.91335 0.88519 0.89181 1.58910 1.06760 1.11802 1.40835 1.22356 0.84629 0.96973 1.02734 1.21916 0.99440 0.87301 0.91535 1.46609 1.05320 1.46605 1.37332 1.20820 0.77628 0.89406 0.89461 1.85392 1.23515 1.65060 1.57601 1.72339 1.34301 1.15191 1.14619 1.18821 0.88744 0.91844 0.91325 1.21444 1.14688 1.28364 0.92159 0.93240 1.25994 0.94608 0.94828 1.04390 1.70085 1.19502 1.32757 1.34968 0.85385 0.78409 0.78479 0.77987 1.19071 1.20006 1.19559 1.21635 0.77176 0.94919 1.03907 1.22812 1.02664 0.92756 0.88837 1.68207 1.42290 0.98551 1.20795 1.23367 0.86969 0.94066 0.88533 1.20071 0.99100 0.87443 0.98276 1.21712 1.02424 1.00020 0.94674 1.21729 1.02488 1.00015 0.94883 1.68094 1.09319 1.30776 1.18314 0.88359 0.88254 0.89951 0.81356 0.94409 0.87378 0.87934 0.88398 0.74136 0.98696 1.00104 0.92501 0.89216 0.89377 0.94957 0.86111 0.88926 0.89711 0.93516 0.92023 0.94273 0.89646 0.91916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.96 10.21 71.24 0.73 -0.23 16 2 C 0.18 3.16 6.82 42.42 0.29 3.45 16 3 C -0.25 -4.44 8.93 22.58 0.20 -4.24 16 4 C 0.35 7.50 6.40 133.16 0.85 8.35 16 5 N -0.47 -9.51 4.65 -699.49 -3.25 -12.76 16 6 C 0.06 1.22 4.84 86.38 0.42 1.64 16 7 C 0.12 2.26 6.59 86.35 0.57 2.83 16 8 N -0.63 -17.75 3.07 -817.32 -2.51 -20.26 16 9 C 0.54 21.68 8.55 179.63 1.54 23.22 16 10 O -0.52 -19.93 11.99 -83.69 -1.00 -20.93 16 11 N -0.62 -31.25 9.17 -469.73 -4.31 -35.56 16 12 C 0.22 13.52 6.09 85.63 0.52 14.04 16 13 C -0.53 -33.43 9.39 25.60 0.24 -33.19 16 14 H 0.05 3.11 7.81 -2.91 -0.02 3.08 16 15 C 0.00 -0.02 5.46 84.66 0.46 0.44 16 16 N -0.93 -59.78 13.29 21.45 0.28 -59.50 16 17 Si 0.97 47.09 29.54 68.60 2.03 49.11 16 18 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 19 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 20 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 21 C 0.15 3.73 6.63 86.51 0.57 4.30 16 22 C 0.06 1.19 5.44 86.54 0.47 1.66 16 23 N -0.58 -13.59 8.70 -185.44 -1.61 -15.20 16 24 C 0.34 7.38 6.34 138.77 0.88 8.26 16 25 C -0.03 -0.47 3.25 -11.54 -0.04 -0.51 16 26 C -0.13 -1.72 9.09 71.98 0.65 -1.07 16 27 C -0.13 -1.98 9.09 71.98 0.65 -1.32 16 28 N -0.55 -11.37 9.74 -176.28 -1.72 -13.09 16 29 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.10 0.59 8.10 -2.39 -0.02 0.57 16 31 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.17 2.09 7.24 -2.91 -0.02 2.07 16 33 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.11 1.97 7.67 -2.39 -0.02 1.96 16 35 H 0.10 1.47 5.59 -2.39 -0.01 1.46 16 36 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.40 9.57 6.17 -74.05 -0.46 9.12 16 38 H 0.00 -0.32 8.14 -2.39 -0.02 -0.34 16 39 H -0.02 -1.24 6.74 -2.38 -0.02 -1.25 16 40 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 41 H 0.09 1.92 8.14 -2.38 -0.02 1.90 16 42 H 0.09 2.81 7.01 -2.38 -0.02 2.79 16 43 H 0.03 0.85 8.14 -2.38 -0.02 0.83 16 44 H 0.12 1.91 6.71 -2.39 -0.02 1.90 16 45 H 0.09 1.54 8.09 -2.39 -0.02 1.52 16 46 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 47 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 48 H 0.06 0.88 8.01 -2.39 -0.02 0.86 16 49 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 50 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 51 H 0.06 0.98 8.01 -2.39 -0.02 0.96 16 Total: -1.00 -84.17 409.60 -2.60 -86.78 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: 0.48 Total: 13.79 kcal Atomic # 6 Polarization: 18.60 SS G_CDS: 9.01 Total: 27.61 kcal Atomic # 7 Polarization: -143.24 SS G_CDS: -13.12 Total: -156.36 kcal Atomic # 8 Polarization: -19.93 SS G_CDS: -1.00 Total: -20.93 kcal Atomic # 14 Polarization: 47.09 SS G_CDS: 2.03 Total: 49.11 kcal Total: -84.17 -2.60 -86.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331158550.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.445 kcal (2) G-P(sol) polarization free energy of solvation -84.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.776 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds