Wall clock time and date at job start Wed Apr 1 2020 04:49:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35247 * 126.06918 * 2 1 4 4 C 1.40398 * 107.86446 * 179.97438 * 3 2 1 5 5 N 1.40193 * 125.96833 * 179.97438 * 4 3 2 6 6 C 1.34779 * 120.00546 * 0.02562 * 5 4 3 7 7 O 1.21591 * 119.99371 * 359.97438 * 6 5 4 8 8 N 1.34775 * 120.00198 * 179.97438 * 6 5 4 9 9 C 1.47020 * 125.64878 * 0.02562 * 8 6 5 10 10 C 1.54324 * 107.39983 * 178.98301 * 9 8 6 11 11 C 1.55154 * 102.94319 * 337.73017 * 10 9 8 12 12 H 1.09001 * 111.00246 * 277.42869 * 11 10 9 13 13 N 1.46901 * 111.00350 * 153.61277 * 11 10 9 14 14 C 1.48529 * 110.99941 * 57.60913 * 13 11 10 15 15 C 1.54938 * 103.23066 * 159.71794 * 14 13 11 16 16 C 1.54597 * 102.91962 * 322.58386 * 15 14 13 17 17 C 1.47906 * 110.99697 * 175.00048 * 13 11 10 18 18 C 1.47739 * 125.81566 * 179.91749 * 8 6 5 19 19 N 1.31204 * 108.05720 * 0.27011 * 4 3 2 20 20 N 1.34960 * 126.06912 * 179.97438 * 2 1 3 21 21 C 1.46497 * 125.98084 * 0.02562 * 20 2 1 22 22 C 1.50692 * 109.47393 * 90.00164 * 21 20 2 23 23 H 1.08009 * 119.99972 * 0.02562 * 22 21 20 24 24 C 1.37873 * 120.00493 * 180.02562 * 22 21 20 25 25 N 1.31518 * 119.99974 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00308 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.47043 * 359.97438 * 26 24 22 28 28 H 1.48504 * 109.47335 * 120.00140 * 26 24 22 29 29 H 1.48501 * 109.47331 * 240.00155 * 26 24 22 30 30 H 1.09000 * 109.47374 * 90.01987 * 1 2 3 31 31 H 1.09005 * 109.47211 * 210.02347 * 1 2 3 32 32 H 1.09002 * 109.47064 * 330.01664 * 1 2 3 33 33 H 1.07999 * 126.06530 * 359.97438 * 3 2 1 34 34 H 0.97006 * 119.99600 * 180.02562 * 5 4 3 35 35 H 1.09002 * 109.88367 * 59.48800 * 9 8 6 36 36 H 1.09000 * 109.88319 * 298.47418 * 9 8 6 37 37 H 1.09003 * 110.72146 * 96.09473 * 10 9 8 38 38 H 1.08999 * 110.72099 * 219.36676 * 10 9 8 39 39 H 1.09008 * 110.66322 * 278.15195 * 14 13 11 40 40 H 1.08997 * 110.67381 * 41.27878 * 14 13 11 41 41 H 1.08998 * 110.72265 * 204.22194 * 15 14 13 42 42 H 1.09001 * 110.72195 * 80.94167 * 15 14 13 43 43 H 1.08994 * 110.30314 * 263.03862 * 16 15 14 44 44 H 1.08993 * 110.30750 * 140.87281 * 16 15 14 45 45 H 1.09000 * 109.92013 * 333.50625 * 17 13 11 46 46 H 1.08998 * 109.91718 * 94.60992 * 17 13 11 47 47 H 1.09001 * 110.28478 * 85.25799 * 18 8 6 48 48 H 1.08995 * 110.47424 * 323.03179 * 18 8 6 49 49 H 1.09001 * 109.47495 * 210.00759 * 21 20 2 50 50 H 1.09008 * 109.47090 * 330.00327 * 21 20 2 51 51 H 0.96993 * 120.00014 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3033 1.0932 0.0000 4 6 3.6370 0.6546 0.0006 5 7 4.7737 1.4752 0.0003 6 6 4.6370 2.8160 -0.0001 7 8 3.5277 3.3139 -0.0007 8 7 5.7298 3.6049 0.0001 9 6 7.1238 3.1377 0.0002 10 6 8.0292 4.3871 -0.0257 11 6 7.0968 5.4799 -0.6120 12 1 7.0692 5.4271 -1.7004 13 7 7.5057 6.8174 -0.1627 14 6 8.9131 7.0999 -0.5442 15 6 8.9928 8.6461 -0.4858 16 6 7.6124 9.0840 -1.0266 17 6 6.6929 7.8670 -0.8148 18 6 5.7296 5.0822 -0.0021 19 7 3.6336 -0.6574 -0.0049 20 7 2.3016 -1.0909 0.0005 21 6 1.8501 -2.4846 0.0006 22 6 1.6959 -2.9627 -1.4201 23 1 1.9129 -2.2954 -2.2411 24 6 1.2777 -4.2522 -1.6720 25 7 1.0129 -5.0647 -0.6723 26 14 1.0872 -4.8451 -3.4331 27 1 1.4440 -3.7466 -4.3666 28 1 1.9860 -6.0042 -3.6652 29 1 -0.3206 -5.2556 -3.6677 30 1 -0.3634 -0.0004 -1.0276 31 1 -0.3634 -0.8898 0.5142 32 1 -0.3633 0.8902 0.5136 33 1 1.9720 2.1211 -0.0004 34 1 5.6587 1.0779 0.0004 35 1 7.3100 2.5265 -0.8829 36 1 7.3199 2.5564 0.9012 37 1 8.3487 4.6528 0.9820 38 1 8.8902 4.2261 -0.6744 39 1 9.6029 6.6518 0.1712 40 1 9.1176 6.7419 -1.5532 41 1 9.7932 9.0155 -1.1269 42 1 9.1309 8.9867 0.5404 43 1 7.6811 9.3262 -2.0871 44 1 7.2408 9.9412 -0.4653 45 1 6.3247 7.5081 -1.7759 46 1 5.8541 8.1388 -0.1739 47 1 5.6437 5.4616 1.0162 48 1 4.9145 5.4625 -0.6177 49 1 2.5845 -3.1044 0.5149 50 1 0.8912 -2.5558 0.5141 51 1 0.7184 -5.9717 -0.8495 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000371418958.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:49:06 Heat of formation + Delta-G solvation = 64.981965 kcal Electronic energy + Delta-G solvation = -30099.235151 eV Core-core repulsion = 26035.498952 eV Total energy + Delta-G solvation = -4063.736199 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.86293 -40.19198 -39.19078 -37.17750 -34.77504 -33.42593 -32.76919 -31.33531 -30.79768 -30.39578 -29.23434 -28.14868 -26.55250 -26.26705 -24.07058 -22.85401 -22.46166 -21.34226 -20.81934 -20.47114 -19.64712 -19.15311 -17.72876 -17.19623 -16.66448 -16.35228 -16.11343 -15.62022 -15.38450 -14.98676 -14.67424 -14.44448 -14.24176 -14.13012 -13.96176 -13.61516 -13.25095 -13.01203 -12.86715 -12.74038 -12.62215 -12.45535 -12.24631 -12.11461 -11.78988 -11.76658 -11.64115 -11.54084 -11.36454 -11.32367 -11.19468 -11.06674 -10.97960 -10.83145 -10.40293 -10.23597 -9.97899 -9.63154 -9.48986 -8.94282 -8.80808 -8.62925 -7.87479 -7.36487 -6.23576 -4.30870 2.25523 2.67377 3.11772 3.21126 3.28930 3.33009 3.38571 3.57415 3.86343 3.91503 4.17663 4.19175 4.26661 4.33350 4.45710 4.49514 4.65667 4.81860 4.88258 5.00902 5.05487 5.10095 5.19092 5.25562 5.33982 5.36634 5.39309 5.42020 5.52262 5.54330 5.59291 5.62855 5.71181 5.74857 5.75263 5.90228 5.97736 6.15534 6.30088 6.38128 6.49797 6.58869 6.64830 6.73690 6.94980 7.07367 7.16067 7.55647 7.69669 7.91228 7.93842 8.10544 8.60754 8.70823 8.78898 9.35301 10.83614 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.023038 B = 0.001814 C = 0.001774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.071425 B =15434.352106 C =15779.084219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.091 3.909 3 C -0.289 4.289 4 C 0.283 3.717 5 N -0.641 5.641 6 C 0.733 3.267 7 O -0.563 6.563 8 N -0.636 5.636 9 C 0.096 3.904 10 C -0.120 4.120 11 C 0.059 3.941 12 H 0.062 0.938 13 N -0.506 5.506 14 C 0.036 3.964 15 C -0.124 4.124 16 C -0.132 4.132 17 C 0.032 3.968 18 C 0.141 3.859 19 N -0.324 5.324 20 N -0.318 5.318 21 C 0.258 3.742 22 C -0.534 4.534 23 H 0.065 0.935 24 C 0.065 3.935 25 N -0.892 5.892 26 Si 0.906 3.094 27 H -0.272 1.272 28 H -0.281 1.281 29 H -0.281 1.281 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.160 0.840 34 H 0.405 0.595 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.089 0.911 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.046 0.954 41 H 0.071 0.929 42 H 0.075 0.925 43 H 0.066 0.934 44 H 0.073 0.927 45 H 0.047 0.953 46 H 0.083 0.917 47 H 0.078 0.922 48 H 0.078 0.922 49 H 0.052 0.948 50 H 0.054 0.946 51 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.503 25.433 1.264 29.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.040 4.040 3 C -0.320 4.320 4 C 0.029 3.971 5 N -0.291 5.291 6 C 0.434 3.566 7 O -0.438 6.438 8 N -0.376 5.376 9 C -0.028 4.028 10 C -0.158 4.158 11 C -0.051 4.051 12 H 0.080 0.920 13 N -0.231 5.231 14 C -0.092 4.092 15 C -0.162 4.162 16 C -0.170 4.170 17 C -0.095 4.095 18 C 0.017 3.983 19 N -0.155 5.155 20 N -0.101 5.101 21 C 0.141 3.859 22 C -0.572 4.572 23 H 0.083 0.917 24 C -0.138 4.138 25 N -0.530 5.530 26 Si 0.733 3.267 27 H -0.196 1.196 28 H -0.207 1.207 29 H -0.207 1.207 30 H 0.095 0.905 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.177 0.823 34 H 0.240 0.760 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.108 0.892 38 H 0.100 0.900 39 H 0.103 0.897 40 H 0.064 0.936 41 H 0.090 0.910 42 H 0.094 0.906 43 H 0.085 0.915 44 H 0.092 0.908 45 H 0.065 0.935 46 H 0.101 0.899 47 H 0.096 0.904 48 H 0.096 0.904 49 H 0.070 0.930 50 H 0.072 0.928 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 15.153 24.383 1.876 28.769 hybrid contribution 0.139 -0.178 -1.893 1.907 sum 15.292 24.205 -0.017 28.631 Atomic orbital electron populations 1.20328 0.87915 1.02790 1.03128 1.21051 0.94878 0.87152 1.00950 1.21232 0.89691 0.99811 1.21297 1.18650 0.86513 0.89249 1.02660 1.41371 1.07622 1.03536 1.76559 1.15050 0.83278 0.80170 0.78098 1.90877 1.22751 1.73371 1.56785 1.47431 1.04495 1.06672 1.79011 1.22044 0.81207 0.97400 1.02108 1.22668 0.97255 0.92963 1.02945 1.22997 0.95331 0.89194 0.97578 0.92042 1.64729 1.02882 1.00772 1.54718 1.23224 0.90313 0.96099 0.99560 1.22483 0.96953 0.94825 1.01965 1.22404 0.95294 0.98057 1.01239 1.22923 0.97053 0.91583 0.97990 1.21972 0.96312 0.78115 1.01851 1.77244 0.99956 1.08267 1.30000 1.48952 1.00876 1.07713 1.52513 1.19679 0.95964 0.71395 0.98895 1.21371 1.46488 0.97922 0.91454 0.91719 1.24927 0.94740 0.96097 0.98073 1.69929 1.45079 1.07083 1.30918 0.86311 0.77849 0.78773 0.83806 1.19608 1.20688 1.20654 0.90464 0.90888 0.90832 0.82265 0.75974 0.91317 0.90998 0.89245 0.90031 0.89735 0.93602 0.91025 0.90599 0.91506 0.90848 0.93466 0.89877 0.90396 0.90405 0.93035 0.92780 0.92348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.47 10.11 36.01 0.36 -1.10 16 2 C 0.09 1.98 6.92 -82.28 -0.57 1.41 16 3 C -0.29 -6.22 9.52 -39.83 -0.38 -6.60 16 4 C 0.28 6.02 8.11 -154.37 -1.25 4.76 16 5 N -0.64 -10.81 5.41 -15.51 -0.08 -10.89 16 6 C 0.73 11.93 8.46 -86.92 -0.74 11.20 16 7 O -0.56 -11.00 13.75 5.29 0.07 -10.92 16 8 N -0.64 -7.56 3.34 -175.99 -0.59 -8.14 16 9 C 0.10 0.79 6.14 -3.06 -0.02 0.77 16 10 C -0.12 -0.75 5.63 -24.90 -0.14 -0.89 16 11 C 0.06 0.44 2.45 -65.57 -0.16 0.28 16 12 H 0.06 0.49 7.90 -51.93 -0.41 0.08 16 13 N -0.51 -3.52 5.15 -219.94 -1.13 -4.66 16 14 C 0.04 0.19 5.78 -1.90 -0.01 0.18 16 15 C -0.12 -0.59 7.06 -24.87 -0.18 -0.76 16 16 C -0.13 -0.67 6.93 -25.37 -0.18 -0.84 16 17 C 0.03 0.21 6.35 -2.75 -0.02 0.19 16 18 C 0.14 1.43 6.23 -2.36 -0.01 1.42 16 19 N -0.32 -7.69 12.59 31.44 0.40 -7.29 16 20 N -0.32 -7.72 3.59 -58.33 -0.21 -7.93 16 21 C 0.26 6.73 5.99 -5.20 -0.03 6.70 16 22 C -0.53 -14.89 9.39 -34.45 -0.32 -15.21 16 23 H 0.06 1.87 7.81 -52.48 -0.41 1.46 16 24 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 25 N -0.89 -25.24 13.29 55.43 0.74 -24.50 16 26 Si 0.91 21.30 29.54 -169.99 -5.02 16.28 16 27 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 28 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 29 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 30 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 31 H 0.07 1.28 7.07 -51.93 -0.37 0.92 16 32 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.16 3.38 5.91 -52.49 -0.31 3.07 16 34 H 0.41 5.65 7.81 -40.82 -0.32 5.33 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.08 0.41 8.01 -51.92 -0.42 0.00 16 40 H 0.05 0.24 8.02 -51.93 -0.42 -0.17 16 41 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 42 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 44 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.05 0.32 7.62 -51.93 -0.40 -0.08 16 46 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 47 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 48 H 0.08 0.87 8.05 -51.93 -0.42 0.45 16 49 H 0.05 1.42 8.14 -51.93 -0.42 1.00 16 50 H 0.05 1.39 7.04 -51.92 -0.37 1.02 16 51 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 407.92 15.07 6.15 6.15 Total: -1.00 -33.23 407.92 -11.88 -45.11 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -8.46 Total: 3.64 kcal Atomic # 6 Polarization: 6.92 SS G_CDS: -3.74 Total: 3.18 kcal Atomic # 7 Polarization: -62.54 SS G_CDS: -0.88 Total: -63.42 kcal Atomic # 8 Polarization: -11.00 SS G_CDS: 0.07 Total: -10.92 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -33.23 -11.88 -45.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000371418958.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.088 kcal (2) G-P(sol) polarization free energy of solvation -33.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds