Wall clock time and date at job start Wed Apr 1 2020 04:49:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35247 * 126.06918 * 2 1 4 4 C 1.40398 * 107.86446 * 179.97438 * 3 2 1 5 5 N 1.40193 * 125.96833 * 179.97438 * 4 3 2 6 6 C 1.34779 * 120.00546 * 0.02562 * 5 4 3 7 7 O 1.21591 * 119.99371 * 359.97438 * 6 5 4 8 8 N 1.34775 * 120.00198 * 179.97438 * 6 5 4 9 9 C 1.47020 * 125.64878 * 0.02562 * 8 6 5 10 10 C 1.54324 * 107.39983 * 178.98301 * 9 8 6 11 11 C 1.55154 * 102.94319 * 337.73017 * 10 9 8 12 12 H 1.09001 * 111.00246 * 277.42869 * 11 10 9 13 13 N 1.46901 * 111.00350 * 153.61277 * 11 10 9 14 14 C 1.48529 * 110.99941 * 57.60913 * 13 11 10 15 15 C 1.54938 * 103.23066 * 159.71794 * 14 13 11 16 16 C 1.54597 * 102.91962 * 322.58386 * 15 14 13 17 17 C 1.47906 * 110.99697 * 175.00048 * 13 11 10 18 18 C 1.47739 * 125.81566 * 179.91749 * 8 6 5 19 19 N 1.31204 * 108.05720 * 0.27011 * 4 3 2 20 20 N 1.34960 * 126.06912 * 179.97438 * 2 1 3 21 21 C 1.46497 * 125.98084 * 0.02562 * 20 2 1 22 22 C 1.50692 * 109.47393 * 90.00164 * 21 20 2 23 23 H 1.08009 * 119.99972 * 0.02562 * 22 21 20 24 24 C 1.37873 * 120.00493 * 180.02562 * 22 21 20 25 25 N 1.31518 * 119.99974 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00308 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.47043 * 359.97438 * 26 24 22 28 28 H 1.48504 * 109.47335 * 120.00140 * 26 24 22 29 29 H 1.48501 * 109.47331 * 240.00155 * 26 24 22 30 30 H 1.09000 * 109.47374 * 90.01987 * 1 2 3 31 31 H 1.09005 * 109.47211 * 210.02347 * 1 2 3 32 32 H 1.09002 * 109.47064 * 330.01664 * 1 2 3 33 33 H 1.07999 * 126.06530 * 359.97438 * 3 2 1 34 34 H 0.97006 * 119.99600 * 180.02562 * 5 4 3 35 35 H 1.09002 * 109.88367 * 59.48800 * 9 8 6 36 36 H 1.09000 * 109.88319 * 298.47418 * 9 8 6 37 37 H 1.09003 * 110.72146 * 96.09473 * 10 9 8 38 38 H 1.08999 * 110.72099 * 219.36676 * 10 9 8 39 39 H 1.09008 * 110.66322 * 278.15195 * 14 13 11 40 40 H 1.08997 * 110.67381 * 41.27878 * 14 13 11 41 41 H 1.08998 * 110.72265 * 204.22194 * 15 14 13 42 42 H 1.09001 * 110.72195 * 80.94167 * 15 14 13 43 43 H 1.08994 * 110.30314 * 263.03862 * 16 15 14 44 44 H 1.08993 * 110.30750 * 140.87281 * 16 15 14 45 45 H 1.09000 * 109.92013 * 333.50625 * 17 13 11 46 46 H 1.08998 * 109.91718 * 94.60992 * 17 13 11 47 47 H 1.09001 * 110.28478 * 85.25799 * 18 8 6 48 48 H 1.08995 * 110.47424 * 323.03179 * 18 8 6 49 49 H 1.09001 * 109.47495 * 210.00759 * 21 20 2 50 50 H 1.09008 * 109.47090 * 330.00327 * 21 20 2 51 51 H 0.96993 * 120.00014 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3033 1.0932 0.0000 4 6 3.6370 0.6546 0.0006 5 7 4.7737 1.4752 0.0003 6 6 4.6370 2.8160 -0.0001 7 8 3.5277 3.3139 -0.0007 8 7 5.7298 3.6049 0.0001 9 6 7.1238 3.1377 0.0002 10 6 8.0292 4.3871 -0.0257 11 6 7.0968 5.4799 -0.6120 12 1 7.0692 5.4271 -1.7004 13 7 7.5057 6.8174 -0.1627 14 6 8.9131 7.0999 -0.5442 15 6 8.9928 8.6461 -0.4858 16 6 7.6124 9.0840 -1.0266 17 6 6.6929 7.8670 -0.8148 18 6 5.7296 5.0822 -0.0021 19 7 3.6336 -0.6574 -0.0049 20 7 2.3016 -1.0909 0.0005 21 6 1.8501 -2.4846 0.0006 22 6 1.6959 -2.9627 -1.4201 23 1 1.9129 -2.2954 -2.2411 24 6 1.2777 -4.2522 -1.6720 25 7 1.0129 -5.0647 -0.6723 26 14 1.0872 -4.8451 -3.4331 27 1 1.4440 -3.7466 -4.3666 28 1 1.9860 -6.0042 -3.6652 29 1 -0.3206 -5.2556 -3.6677 30 1 -0.3634 -0.0004 -1.0276 31 1 -0.3634 -0.8898 0.5142 32 1 -0.3633 0.8902 0.5136 33 1 1.9720 2.1211 -0.0004 34 1 5.6587 1.0779 0.0004 35 1 7.3100 2.5265 -0.8829 36 1 7.3199 2.5564 0.9012 37 1 8.3487 4.6528 0.9820 38 1 8.8902 4.2261 -0.6744 39 1 9.6029 6.6518 0.1712 40 1 9.1176 6.7419 -1.5532 41 1 9.7932 9.0155 -1.1269 42 1 9.1309 8.9867 0.5404 43 1 7.6811 9.3262 -2.0871 44 1 7.2408 9.9412 -0.4653 45 1 6.3247 7.5081 -1.7759 46 1 5.8541 8.1388 -0.1739 47 1 5.6437 5.4616 1.0162 48 1 4.9145 5.4625 -0.6177 49 1 2.5845 -3.1044 0.5149 50 1 0.8912 -2.5558 0.5141 51 1 0.7184 -5.9717 -0.8495 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000371418958.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:49:05 Heat of formation + Delta-G solvation = 44.014943 kcal Electronic energy + Delta-G solvation = -30100.144349 eV Core-core repulsion = 26035.498952 eV Total energy + Delta-G solvation = -4064.645398 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.36379 -41.34255 -40.05285 -38.02763 -36.34981 -35.32682 -33.71667 -32.83610 -32.54753 -31.09186 -29.78196 -29.02314 -28.31823 -27.86210 -25.33630 -24.46753 -23.02553 -22.41231 -21.52586 -21.27831 -21.11342 -20.44999 -18.98157 -18.75602 -17.97905 -17.60643 -17.13992 -16.86008 -16.64592 -16.27864 -16.10188 -15.70133 -15.51336 -14.93854 -14.79304 -14.65395 -14.40383 -14.24654 -14.10694 -13.81323 -13.71156 -13.57445 -13.42631 -13.29859 -13.23137 -13.12072 -12.84939 -12.67712 -12.30531 -12.26830 -12.19402 -12.10806 -12.01882 -11.90328 -11.74797 -11.59459 -11.38815 -11.37095 -11.17626 -10.73388 -9.88564 -9.56671 -9.44530 -9.08279 -8.32488 -6.50048 0.95964 1.02504 1.36668 1.38194 1.50865 1.61557 1.95111 2.32518 2.34696 2.78467 2.96959 2.98913 3.34587 3.60046 3.76587 3.83918 3.99197 4.02184 4.12159 4.15551 4.21910 4.36500 4.41421 4.42266 4.56358 4.65444 4.68627 4.69777 4.72017 4.77153 4.86574 4.89388 4.89888 4.96250 4.97551 4.99330 5.01337 5.06436 5.11511 5.13802 5.15421 5.25230 5.34286 5.37174 5.54284 5.79067 5.81686 5.91573 5.94088 6.04823 6.26500 6.58080 6.64025 7.05723 7.20790 7.31726 8.73521 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.023038 B = 0.001814 C = 0.001774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.071425 B =15434.352106 C =15779.084219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.089 3.911 3 C -0.299 4.299 4 C 0.292 3.708 5 N -0.633 5.633 6 C 0.728 3.272 7 O -0.600 6.600 8 N -0.629 5.629 9 C 0.087 3.913 10 C -0.108 4.108 11 C 0.068 3.932 12 H 0.060 0.940 13 N -0.515 5.515 14 C 0.035 3.965 15 C -0.122 4.122 16 C -0.130 4.130 17 C 0.028 3.972 18 C 0.139 3.861 19 N -0.358 5.358 20 N -0.342 5.342 21 C 0.274 3.726 22 C -0.552 4.552 23 H 0.048 0.952 24 C 0.023 3.977 25 N -0.917 5.917 26 Si 0.972 3.028 27 H -0.275 1.275 28 H -0.274 1.274 29 H -0.267 1.267 30 H 0.084 0.916 31 H 0.070 0.930 32 H 0.105 0.895 33 H 0.164 0.836 34 H 0.419 0.581 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.095 0.905 38 H 0.106 0.894 39 H 0.093 0.907 40 H 0.050 0.950 41 H 0.084 0.916 42 H 0.074 0.926 43 H 0.072 0.928 44 H 0.076 0.924 45 H 0.042 0.958 46 H 0.075 0.925 47 H 0.074 0.926 48 H 0.062 0.938 49 H 0.025 0.975 50 H 0.053 0.947 51 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.940 26.529 0.397 31.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.041 4.041 3 C -0.330 4.330 4 C 0.037 3.963 5 N -0.284 5.284 6 C 0.430 3.570 7 O -0.478 6.478 8 N -0.367 5.367 9 C -0.035 4.035 10 C -0.146 4.146 11 C -0.041 4.041 12 H 0.078 0.922 13 N -0.240 5.240 14 C -0.092 4.092 15 C -0.160 4.160 16 C -0.168 4.168 17 C -0.099 4.099 18 C 0.016 3.984 19 N -0.189 5.189 20 N -0.124 5.124 21 C 0.156 3.844 22 C -0.590 4.590 23 H 0.067 0.933 24 C -0.178 4.178 25 N -0.556 5.556 26 Si 0.796 3.204 27 H -0.200 1.200 28 H -0.199 1.199 29 H -0.192 1.192 30 H 0.102 0.898 31 H 0.089 0.911 32 H 0.123 0.877 33 H 0.181 0.819 34 H 0.256 0.744 35 H 0.097 0.903 36 H 0.101 0.899 37 H 0.113 0.887 38 H 0.124 0.876 39 H 0.112 0.888 40 H 0.068 0.932 41 H 0.103 0.897 42 H 0.093 0.907 43 H 0.091 0.909 44 H 0.095 0.905 45 H 0.060 0.940 46 H 0.093 0.907 47 H 0.093 0.907 48 H 0.080 0.920 49 H 0.044 0.956 50 H 0.071 0.929 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 16.656 25.516 1.022 30.488 hybrid contribution -0.242 -0.380 -1.573 1.636 sum 16.413 25.136 -0.551 30.025 Atomic orbital electron populations 1.20471 0.85252 1.04241 1.03970 1.21726 0.96672 0.86372 0.99379 1.21386 0.89990 0.99863 1.21797 1.18918 0.87919 0.88932 1.00535 1.41331 1.07112 1.03555 1.76448 1.15211 0.83898 0.79955 0.77983 1.90836 1.24655 1.73872 1.58450 1.47462 1.05005 1.07113 1.77096 1.22372 0.79163 0.98780 1.03206 1.22660 0.97090 0.91044 1.03764 1.22861 0.93890 0.90128 0.97263 0.92187 1.64723 1.03910 1.00359 1.54963 1.23301 0.89244 0.96665 1.00028 1.22492 0.96979 0.94352 1.02162 1.22403 0.95269 0.97435 1.01725 1.22948 0.97269 0.92233 0.97485 1.22074 0.97759 0.76960 1.01643 1.77164 1.00124 1.09514 1.32089 1.48771 1.01592 1.07497 1.54559 1.19269 0.95000 0.72339 0.97822 1.21460 1.47426 0.98370 0.91755 0.93331 1.25723 0.93965 0.95919 1.02199 1.70006 1.45113 1.07564 1.32888 0.85305 0.78487 0.78056 0.78590 1.19955 1.19922 1.19180 0.89775 0.91111 0.87657 0.81867 0.74361 0.90251 0.89905 0.88686 0.87605 0.88833 0.93178 0.89733 0.90748 0.90947 0.90548 0.93996 0.90679 0.90733 0.91979 0.95648 0.92878 0.91735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.82 10.11 71.24 0.72 -2.10 16 2 C 0.09 3.90 6.92 41.39 0.29 4.19 16 3 C -0.30 -12.99 9.52 22.11 0.21 -12.78 16 4 C 0.29 12.56 8.11 133.31 1.08 13.64 16 5 N -0.63 -21.22 5.41 -321.24 -1.74 -22.96 16 6 C 0.73 23.61 8.46 179.05 1.52 25.12 16 7 O -0.60 -23.73 13.75 -4.00 -0.06 -23.79 16 8 N -0.63 -14.41 3.34 -828.96 -2.77 -17.18 16 9 C 0.09 1.24 6.14 86.73 0.53 1.78 16 10 C -0.11 -1.05 5.63 31.78 0.18 -0.87 16 11 C 0.07 0.92 2.45 46.30 0.11 1.03 16 12 H 0.06 0.85 7.90 -2.39 -0.02 0.83 16 13 N -0.51 -6.34 5.15 -849.77 -4.38 -10.72 16 14 C 0.03 0.29 5.78 86.65 0.50 0.79 16 15 C -0.12 -0.89 7.06 31.80 0.22 -0.66 16 16 C -0.13 -1.13 6.93 31.47 0.22 -0.91 16 17 C 0.03 0.35 6.35 86.45 0.55 0.90 16 18 C 0.14 2.75 6.23 86.79 0.54 3.29 16 19 N -0.36 -17.39 12.59 -54.44 -0.69 -18.07 16 20 N -0.34 -17.01 3.59 -338.45 -1.22 -18.22 16 21 C 0.27 14.75 5.99 85.63 0.51 15.26 16 22 C -0.55 -31.35 9.39 25.60 0.24 -31.11 16 23 H 0.05 2.86 7.81 -2.91 -0.02 2.84 16 24 C 0.02 1.26 5.46 84.65 0.46 1.72 16 25 N -0.92 -52.07 13.29 21.45 0.28 -51.79 16 26 Si 0.97 43.46 29.54 68.60 2.03 45.49 16 27 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 28 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 29 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 30 H 0.08 2.81 8.14 -2.39 -0.02 2.79 16 31 H 0.07 2.47 7.07 -2.38 -0.02 2.46 16 32 H 0.10 2.94 8.14 -2.39 -0.02 2.92 16 33 H 0.16 6.98 5.91 -2.91 -0.02 6.96 16 34 H 0.42 11.40 7.81 -92.70 -0.72 10.67 16 35 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.09 0.88 8.14 -2.39 -0.02 0.87 16 38 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 39 H 0.09 0.63 8.01 -2.38 -0.02 0.61 16 40 H 0.05 0.40 8.02 -2.39 -0.02 0.38 16 41 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 42 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 43 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 44 H 0.08 0.61 8.14 -2.39 -0.02 0.60 16 45 H 0.04 0.54 7.62 -2.39 -0.02 0.53 16 46 H 0.07 1.00 8.14 -2.39 -0.02 0.99 16 47 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 48 H 0.06 1.43 8.05 -2.39 -0.02 1.41 16 49 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 50 H 0.05 2.82 7.04 -2.38 -0.02 2.80 16 51 H 0.27 14.43 8.31 -92.71 -0.77 13.66 16 Total: -1.00 -72.56 407.92 -0.43 -72.99 By element: Atomic # 1 Polarization: 24.74 SS G_CDS: 0.21 Total: 24.95 kcal Atomic # 6 Polarization: 11.41 SS G_CDS: 7.89 Total: 19.30 kcal Atomic # 7 Polarization: -128.44 SS G_CDS: -10.50 Total: -138.94 kcal Atomic # 8 Polarization: -23.73 SS G_CDS: -0.06 Total: -23.79 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -72.56 -0.43 -72.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000371418958.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.006 kcal (2) G-P(sol) polarization free energy of solvation -72.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds