Wall clock time and date at job start Wed Apr 1 2020 05:03:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31953 * 120.04898 * 2 1 4 4 C 1.32252 * 120.08307 * 180.27337 * 3 2 1 5 5 C 1.38206 * 120.18738 * 359.73145 * 4 3 2 6 6 N 1.32216 * 120.10720 * 0.02562 * 5 4 3 7 7 C 1.32686 * 119.91136 * 359.97438 * 6 5 4 8 8 N 1.39004 * 120.09342 * 179.97438 * 7 6 5 9 9 C 1.46956 * 111.00291 * 301.81721 * 8 7 6 10 10 C 1.53044 * 109.36630 * 183.18846 * 9 8 7 11 11 N 1.46959 * 109.36317 * 301.59698 * 10 9 8 12 12 C 1.46900 * 110.99806 * 183.18763 * 11 10 9 13 13 C 1.53002 * 109.47175 * 169.99984 * 12 11 10 14 14 C 1.50693 * 109.47329 * 180.02562 * 13 12 11 15 15 O 1.21283 * 120.00071 * 359.97438 * 14 13 12 16 16 N 1.34778 * 119.99910 * 179.72826 * 14 13 12 17 17 C 1.46494 * 120.00421 * 0.27482 * 16 14 13 18 18 C 1.46502 * 119.99994 * 180.27685 * 16 14 13 19 19 C 1.50698 * 109.47258 * 89.99648 * 18 16 14 20 20 H 1.07997 * 120.00037 * 0.02562 * 19 18 16 21 21 C 1.37876 * 120.00053 * 180.02562 * 19 18 16 22 22 N 1.31521 * 119.99985 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00355 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.46944 * 59.99656 * 23 21 19 25 25 H 1.48497 * 109.47665 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.47035 * 299.99912 * 23 21 19 27 27 C 1.46952 * 110.88182 * 59.32227 * 11 10 9 28 28 C 1.46959 * 110.99822 * 65.61533 * 8 7 6 29 29 H 1.09001 * 109.47160 * 265.00047 * 1 2 3 30 30 H 1.08993 * 109.47112 * 25.00334 * 1 2 3 31 31 H 1.09002 * 109.46750 * 145.00101 * 1 2 3 32 32 H 1.07999 * 119.90197 * 179.75691 * 4 3 2 33 33 H 1.07996 * 119.94465 * 180.02562 * 5 4 3 34 34 H 1.09006 * 109.48830 * 63.21747 * 9 8 7 35 35 H 1.08997 * 109.48651 * 303.15748 * 9 8 7 36 36 H 1.08999 * 109.48976 * 181.63485 * 10 9 8 37 37 H 1.08996 * 109.49241 * 61.56555 * 10 9 8 38 38 H 1.08998 * 109.47404 * 50.00642 * 12 11 10 39 39 H 1.09001 * 109.47659 * 289.99899 * 12 11 10 40 40 H 1.09003 * 109.46743 * 59.99690 * 13 12 11 41 41 H 1.08994 * 109.47380 * 300.00319 * 13 12 11 42 42 H 1.08997 * 109.47751 * 89.99595 * 17 16 14 43 43 H 1.08997 * 109.47461 * 210.00302 * 17 16 14 44 44 H 1.09005 * 109.46994 * 330.00035 * 17 16 14 45 45 H 1.09002 * 109.47410 * 210.00129 * 18 16 14 46 46 H 1.09006 * 109.47224 * 329.99637 * 18 16 14 47 47 H 0.97003 * 119.99840 * 180.02562 * 22 21 19 48 48 H 1.09007 * 109.49013 * 60.64162 * 27 11 10 49 49 H 1.09001 * 109.49384 * 180.70614 * 27 11 10 50 50 H 1.08997 * 109.49233 * 296.77714 * 28 8 7 51 51 H 1.09007 * 109.48560 * 56.82534 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1678 1.1422 0.0000 4 6 3.4903 1.1430 -0.0055 5 6 4.1859 -0.0512 -0.0056 6 7 3.5315 -1.2000 -0.0008 7 6 2.2046 -1.2056 0.0047 8 7 1.5127 -2.4112 0.0093 9 6 1.8730 -3.2297 -1.1568 10 6 1.0337 -4.5095 -1.1575 11 7 1.2680 -5.2464 0.0922 12 6 0.5368 -6.5205 0.0971 13 6 0.9944 -7.3667 1.2868 14 6 0.2447 -8.6739 1.2914 15 8 -0.5753 -8.9058 0.4284 16 7 0.4890 -9.5874 2.2518 17 6 1.4789 -9.3072 3.2946 18 6 -0.2354 -10.8608 2.2528 19 6 0.5314 -11.8757 1.4448 20 1 1.4652 -11.5999 0.9776 21 6 0.0409 -13.1563 1.3019 22 7 -1.0966 -13.4920 1.8705 23 14 0.9917 -14.4145 0.3009 24 1 2.3362 -14.6101 0.9003 25 1 0.2574 -15.7052 0.3018 26 1 1.1378 -13.9286 -1.0947 27 6 0.9077 -4.4280 1.2584 28 6 1.7470 -3.1481 1.2590 29 1 -0.3633 -0.0896 1.0238 30 1 -0.3633 0.9313 -0.4343 31 1 -0.3633 -0.8419 -0.5895 32 1 4.0281 2.0795 -0.0094 33 1 5.2659 -0.0460 -0.0096 34 1 2.9307 -3.4884 -1.1067 35 1 1.6789 -2.6670 -2.0700 36 1 1.3198 -5.1316 -2.0055 37 1 -0.0225 -4.2517 -1.2350 38 1 0.7375 -7.0581 -0.8296 39 1 -0.5325 -6.3255 0.1798 40 1 0.7938 -6.8290 2.2135 41 1 2.0635 -7.5617 1.2042 42 1 0.9902 -8.8193 4.1380 43 1 1.9307 -10.2416 3.6274 44 1 2.2527 -8.6519 2.8945 45 1 -0.3420 -11.2174 3.2773 46 1 -1.2227 -10.7175 1.8135 47 1 -1.4415 -14.3931 1.7703 48 1 -0.1500 -4.1692 1.2082 49 1 1.1018 -4.9906 2.1716 50 1 2.8032 -3.4060 1.3366 51 1 1.4612 -2.5258 2.1071 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000374124484.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:05 Heat of formation + Delta-G solvation = 37.447204 kcal Electronic energy + Delta-G solvation = -30257.011237 eV Core-core repulsion = 26192.081041 eV Total energy + Delta-G solvation = -4064.930196 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.74908 -39.60581 -38.79760 -36.28086 -34.81956 -34.72639 -32.76212 -32.44490 -31.34715 -30.63592 -28.41626 -27.82374 -26.71439 -25.64564 -24.13039 -23.87116 -23.22020 -22.93886 -21.48347 -20.09138 -18.33642 -18.13967 -17.85160 -16.59336 -16.52119 -16.27439 -16.00454 -15.45137 -15.36424 -15.10511 -14.83858 -14.76784 -14.61068 -14.30418 -13.99684 -13.85078 -13.27846 -13.18861 -13.04314 -12.66121 -12.58584 -12.38645 -12.17656 -12.04965 -11.97471 -11.95781 -11.76860 -11.53694 -11.39954 -11.25355 -11.20991 -11.09179 -10.89549 -10.67403 -10.52625 -10.14502 -9.75930 -9.62897 -9.39702 -8.98211 -8.87503 -8.43852 -8.42024 -7.62250 -6.03019 -4.07766 0.30764 0.69414 3.08021 3.19304 3.32750 3.36963 3.38645 3.47304 3.59786 3.73532 3.87085 4.10955 4.15340 4.46245 4.50309 4.68681 4.76672 4.77779 4.89197 4.93935 5.05450 5.17678 5.18370 5.23603 5.27087 5.30083 5.30994 5.38242 5.43235 5.49642 5.57312 5.62271 5.67775 5.69046 5.79373 5.83446 5.92571 5.95160 6.10555 6.12639 6.24522 6.38452 6.64881 6.87359 6.92704 6.95221 7.07753 7.37606 7.45616 7.56014 7.93372 8.25023 8.44351 8.91544 9.11836 9.57222 11.04964 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.026865 B = 0.001758 C = 0.001750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.982005 B =15925.530322 C =15992.936356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.112 3.888 3 N -0.438 5.438 4 C 0.046 3.954 5 C 0.053 3.947 6 N -0.461 5.461 7 C 0.247 3.753 8 N -0.481 5.481 9 C 0.063 3.937 10 C 0.059 3.941 11 N -0.541 5.541 12 C 0.074 3.926 13 C -0.135 4.135 14 C 0.504 3.496 15 O -0.546 6.546 16 N -0.603 5.603 17 C 0.084 3.916 18 C 0.245 3.755 19 C -0.526 4.526 20 H 0.057 0.943 21 C 0.060 3.940 22 N -0.895 5.895 23 Si 0.899 3.101 24 H -0.277 1.277 25 H -0.286 1.286 26 H -0.276 1.276 27 C 0.054 3.946 28 C 0.064 3.936 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.089 0.911 32 H 0.170 0.830 33 H 0.168 0.832 34 H 0.061 0.939 35 H 0.076 0.924 36 H 0.086 0.914 37 H 0.046 0.954 38 H 0.084 0.916 39 H 0.045 0.955 40 H 0.083 0.917 41 H 0.094 0.906 42 H 0.043 0.957 43 H 0.073 0.927 44 H 0.058 0.942 45 H 0.031 0.969 46 H 0.043 0.957 47 H 0.264 0.736 48 H 0.046 0.954 49 H 0.087 0.913 50 H 0.059 0.941 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.665 29.885 -1.006 31.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.031 4.031 3 N -0.154 5.154 4 C -0.113 4.113 5 C -0.108 4.108 6 N -0.178 5.178 7 C 0.015 3.985 8 N -0.205 5.205 9 C -0.064 4.064 10 C -0.069 4.069 11 N -0.266 5.266 12 C -0.054 4.054 13 C -0.175 4.175 14 C 0.290 3.710 15 O -0.424 6.424 16 N -0.336 5.336 17 C -0.060 4.060 18 C 0.126 3.874 19 C -0.565 4.565 20 H 0.075 0.925 21 C -0.142 4.142 22 N -0.534 5.534 23 Si 0.726 3.274 24 H -0.203 1.203 25 H -0.212 1.212 26 H -0.202 1.202 27 C -0.074 4.074 28 C -0.062 4.062 29 H 0.099 0.901 30 H 0.092 0.908 31 H 0.108 0.892 32 H 0.187 0.813 33 H 0.185 0.815 34 H 0.079 0.921 35 H 0.095 0.905 36 H 0.104 0.896 37 H 0.064 0.936 38 H 0.103 0.897 39 H 0.063 0.937 40 H 0.101 0.899 41 H 0.113 0.887 42 H 0.061 0.939 43 H 0.091 0.909 44 H 0.077 0.923 45 H 0.049 0.951 46 H 0.061 0.939 47 H 0.073 0.927 48 H 0.064 0.936 49 H 0.105 0.895 50 H 0.077 0.923 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 8.096 29.555 -1.417 30.677 hybrid contribution 0.829 -0.778 -0.383 1.200 sum 8.925 28.777 -1.800 30.183 Atomic orbital electron populations 1.20606 0.86972 1.03751 1.03617 1.22156 0.98705 0.87412 0.94789 1.68361 1.08971 1.28736 1.09318 1.23731 0.90783 0.99930 0.96856 1.23601 1.01792 0.88220 0.97207 1.68526 1.09557 1.30707 1.09043 1.20714 0.87664 0.93021 0.97066 1.60403 1.52671 1.02662 1.04783 1.22216 0.99650 0.92912 0.91620 1.22125 0.98494 0.93420 0.92852 1.62138 1.57939 1.04467 1.02080 1.21792 0.95819 0.88388 0.99362 1.21641 1.01830 0.94542 0.99510 1.20297 0.83543 0.85181 0.81933 1.90666 1.35640 1.79293 1.36782 1.48160 1.40200 1.18775 1.26422 1.21632 0.91800 1.01784 0.90827 1.19276 0.92944 0.77872 0.97350 1.21400 1.07454 0.95392 1.32244 0.92525 1.24945 0.95078 0.98361 0.95790 1.69928 1.19392 1.19955 1.44155 0.86552 0.79734 0.80283 0.80805 1.20267 1.21186 1.20175 1.22219 0.97845 0.92577 0.94788 1.22217 1.00164 0.93899 0.89953 0.90096 0.90757 0.89200 0.81275 0.81514 0.92102 0.90510 0.89588 0.93615 0.89726 0.93712 0.89878 0.88724 0.93867 0.90857 0.92313 0.95089 0.93878 0.92688 0.93585 0.89462 0.92302 0.90475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.65 9.86 36.01 0.36 -0.29 16 2 C 0.11 1.02 6.81 -82.15 -0.56 0.46 16 3 N -0.44 -3.97 10.42 -9.12 -0.09 -4.07 16 4 C 0.05 0.31 11.21 -17.38 -0.19 0.11 16 5 C 0.05 0.37 11.22 -17.40 -0.20 0.18 16 6 N -0.46 -4.52 9.83 -12.24 -0.12 -4.64 16 7 C 0.25 2.39 5.32 -154.72 -0.82 1.56 16 8 N -0.48 -4.48 3.75 -172.91 -0.65 -5.13 16 9 C 0.06 0.60 5.41 -3.77 -0.02 0.58 16 10 C 0.06 0.60 5.61 -3.77 -0.02 0.58 16 11 N -0.54 -6.11 4.71 -234.47 -1.10 -7.22 16 12 C 0.07 1.02 4.25 -3.82 -0.02 1.00 16 13 C -0.13 -1.94 4.19 -27.88 -0.12 -2.06 16 14 C 0.50 10.35 7.67 -10.99 -0.08 10.26 16 15 O -0.55 -13.61 15.56 5.56 0.09 -13.52 16 16 N -0.60 -12.82 2.86 -182.96 -0.52 -13.34 16 17 C 0.08 1.32 10.25 59.84 0.61 1.93 16 18 C 0.24 6.47 5.16 -5.19 -0.03 6.44 16 19 C -0.53 -15.06 9.39 -34.44 -0.32 -15.38 16 20 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 21 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 22 N -0.90 -26.78 13.29 55.43 0.74 -26.04 16 23 Si 0.90 22.02 29.54 -169.99 -5.02 16.99 16 24 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 25 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 26 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 27 C 0.05 0.53 5.41 -3.77 -0.02 0.51 16 28 C 0.06 0.60 5.48 -3.76 -0.02 0.58 16 29 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.09 0.63 7.64 -51.93 -0.40 0.23 16 32 H 0.17 0.56 8.06 -52.49 -0.42 0.13 16 33 H 0.17 0.67 8.06 -52.49 -0.42 0.24 16 34 H 0.06 0.66 7.92 -51.93 -0.41 0.25 16 35 H 0.08 0.67 8.13 -51.93 -0.42 0.25 16 36 H 0.09 0.84 8.07 -51.93 -0.42 0.42 16 37 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.08 1.28 7.98 -51.93 -0.41 0.87 16 39 H 0.04 0.66 8.08 -51.93 -0.42 0.24 16 40 H 0.08 1.01 6.46 -51.93 -0.34 0.68 16 41 H 0.09 1.29 7.40 -51.93 -0.38 0.90 16 42 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.07 1.20 8.07 -51.93 -0.42 0.78 16 44 H 0.06 0.76 6.43 -51.93 -0.33 0.42 16 45 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 46 H 0.04 1.28 7.42 -51.93 -0.39 0.90 16 47 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 48 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 49 H 0.09 0.80 6.34 -51.93 -0.33 0.47 16 50 H 0.06 0.63 8.04 -51.93 -0.42 0.21 16 51 H 0.08 0.65 8.13 -51.93 -0.42 0.23 16 LS Contribution 411.08 15.07 6.19 6.19 Total: -1.00 -34.92 411.08 -10.48 -45.40 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: -8.43 Total: -2.73 kcal Atomic # 6 Polarization: 9.65 SS G_CDS: -1.55 Total: 8.10 kcal Atomic # 7 Polarization: -58.68 SS G_CDS: -1.75 Total: -60.43 kcal Atomic # 8 Polarization: -13.61 SS G_CDS: 0.09 Total: -13.52 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -34.92 -10.48 -45.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000374124484.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.845 kcal (2) G-P(sol) polarization free energy of solvation -34.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds