Wall clock time and date at job start Wed Apr 1 2020 05:03:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31953 * 120.04898 * 2 1 4 4 C 1.32252 * 120.08307 * 180.27337 * 3 2 1 5 5 C 1.38206 * 120.18738 * 359.73145 * 4 3 2 6 6 N 1.32216 * 120.10720 * 0.02562 * 5 4 3 7 7 C 1.32686 * 119.91136 * 359.97438 * 6 5 4 8 8 N 1.39004 * 120.09342 * 179.97438 * 7 6 5 9 9 C 1.46956 * 111.00291 * 301.81721 * 8 7 6 10 10 C 1.53044 * 109.36630 * 183.18846 * 9 8 7 11 11 N 1.46959 * 109.36317 * 301.59698 * 10 9 8 12 12 C 1.46900 * 110.99806 * 183.18763 * 11 10 9 13 13 C 1.53002 * 109.47175 * 169.99984 * 12 11 10 14 14 C 1.50693 * 109.47329 * 180.02562 * 13 12 11 15 15 O 1.21283 * 120.00071 * 359.97438 * 14 13 12 16 16 N 1.34778 * 119.99910 * 179.72826 * 14 13 12 17 17 C 1.46494 * 120.00421 * 0.27482 * 16 14 13 18 18 C 1.46502 * 119.99994 * 180.27685 * 16 14 13 19 19 C 1.50698 * 109.47258 * 89.99648 * 18 16 14 20 20 H 1.07997 * 120.00037 * 0.02562 * 19 18 16 21 21 C 1.37876 * 120.00053 * 180.02562 * 19 18 16 22 22 N 1.31521 * 119.99985 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00355 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.46944 * 59.99656 * 23 21 19 25 25 H 1.48497 * 109.47665 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.47035 * 299.99912 * 23 21 19 27 27 C 1.46952 * 110.88182 * 59.32227 * 11 10 9 28 28 C 1.46959 * 110.99822 * 65.61533 * 8 7 6 29 29 H 1.09001 * 109.47160 * 265.00047 * 1 2 3 30 30 H 1.08993 * 109.47112 * 25.00334 * 1 2 3 31 31 H 1.09002 * 109.46750 * 145.00101 * 1 2 3 32 32 H 1.07999 * 119.90197 * 179.75691 * 4 3 2 33 33 H 1.07996 * 119.94465 * 180.02562 * 5 4 3 34 34 H 1.09006 * 109.48830 * 63.21747 * 9 8 7 35 35 H 1.08997 * 109.48651 * 303.15748 * 9 8 7 36 36 H 1.08999 * 109.48976 * 181.63485 * 10 9 8 37 37 H 1.08996 * 109.49241 * 61.56555 * 10 9 8 38 38 H 1.08998 * 109.47404 * 50.00642 * 12 11 10 39 39 H 1.09001 * 109.47659 * 289.99899 * 12 11 10 40 40 H 1.09003 * 109.46743 * 59.99690 * 13 12 11 41 41 H 1.08994 * 109.47380 * 300.00319 * 13 12 11 42 42 H 1.08997 * 109.47751 * 89.99595 * 17 16 14 43 43 H 1.08997 * 109.47461 * 210.00302 * 17 16 14 44 44 H 1.09005 * 109.46994 * 330.00035 * 17 16 14 45 45 H 1.09002 * 109.47410 * 210.00129 * 18 16 14 46 46 H 1.09006 * 109.47224 * 329.99637 * 18 16 14 47 47 H 0.97003 * 119.99840 * 180.02562 * 22 21 19 48 48 H 1.09007 * 109.49013 * 60.64162 * 27 11 10 49 49 H 1.09001 * 109.49384 * 180.70614 * 27 11 10 50 50 H 1.08997 * 109.49233 * 296.77714 * 28 8 7 51 51 H 1.09007 * 109.48560 * 56.82534 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1678 1.1422 0.0000 4 6 3.4903 1.1430 -0.0055 5 6 4.1859 -0.0512 -0.0056 6 7 3.5315 -1.2000 -0.0008 7 6 2.2046 -1.2056 0.0047 8 7 1.5127 -2.4112 0.0093 9 6 1.8730 -3.2297 -1.1568 10 6 1.0337 -4.5095 -1.1575 11 7 1.2680 -5.2464 0.0922 12 6 0.5368 -6.5205 0.0971 13 6 0.9944 -7.3667 1.2868 14 6 0.2447 -8.6739 1.2914 15 8 -0.5753 -8.9058 0.4284 16 7 0.4890 -9.5874 2.2518 17 6 1.4789 -9.3072 3.2946 18 6 -0.2354 -10.8608 2.2528 19 6 0.5314 -11.8757 1.4448 20 1 1.4652 -11.5999 0.9776 21 6 0.0409 -13.1563 1.3019 22 7 -1.0966 -13.4920 1.8705 23 14 0.9917 -14.4145 0.3009 24 1 2.3362 -14.6101 0.9003 25 1 0.2574 -15.7052 0.3018 26 1 1.1378 -13.9286 -1.0947 27 6 0.9077 -4.4280 1.2584 28 6 1.7470 -3.1481 1.2590 29 1 -0.3633 -0.0896 1.0238 30 1 -0.3633 0.9313 -0.4343 31 1 -0.3633 -0.8419 -0.5895 32 1 4.0281 2.0795 -0.0094 33 1 5.2659 -0.0460 -0.0096 34 1 2.9307 -3.4884 -1.1067 35 1 1.6789 -2.6670 -2.0700 36 1 1.3198 -5.1316 -2.0055 37 1 -0.0225 -4.2517 -1.2350 38 1 0.7375 -7.0581 -0.8296 39 1 -0.5325 -6.3255 0.1798 40 1 0.7938 -6.8290 2.2135 41 1 2.0635 -7.5617 1.2042 42 1 0.9902 -8.8193 4.1380 43 1 1.9307 -10.2416 3.6274 44 1 2.2527 -8.6519 2.8945 45 1 -0.3420 -11.2174 3.2773 46 1 -1.2227 -10.7175 1.8135 47 1 -1.4415 -14.3931 1.7703 48 1 -0.1500 -4.1692 1.2082 49 1 1.1018 -4.9906 2.1716 50 1 2.8032 -3.4060 1.3366 51 1 1.4612 -2.5258 2.1071 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000374124484.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:04 Heat of formation + Delta-G solvation = 12.476317 kcal Electronic energy + Delta-G solvation = -30258.094056 eV Core-core repulsion = 26192.081041 eV Total energy + Delta-G solvation = -4066.013015 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.35857 -40.81113 -40.00997 -37.17343 -36.52363 -35.37509 -34.73878 -33.39357 -32.15232 -31.67095 -29.78082 -28.85552 -27.70257 -27.15028 -25.29206 -24.78243 -24.30616 -23.66797 -22.77404 -20.88777 -19.88515 -18.79160 -18.68948 -18.57306 -17.83879 -17.11231 -16.90934 -16.88340 -16.54594 -16.23141 -15.96400 -15.82161 -15.49850 -15.31281 -15.13693 -14.83912 -14.43664 -14.11840 -13.88835 -13.73764 -13.68016 -13.56318 -13.43485 -13.26977 -13.17849 -13.13317 -12.90024 -12.75813 -12.58132 -12.53076 -12.31563 -12.26812 -12.18807 -12.00665 -11.96548 -11.73056 -11.66445 -10.64050 -10.58763 -10.39942 -9.96761 -9.66642 -9.40294 -9.35344 -8.22095 -6.37109 -0.26431 0.09465 1.36555 1.40835 1.48187 1.86069 2.28383 2.40687 2.43962 2.61879 2.91268 3.07110 3.22547 3.30733 3.56184 3.76319 3.83116 3.91565 4.08174 4.14693 4.16286 4.25335 4.26083 4.34576 4.42267 4.43109 4.45980 4.48662 4.62911 4.73489 4.76147 4.78089 4.85173 4.89027 4.90776 4.94992 4.96211 4.98756 5.05392 5.08160 5.13912 5.23838 5.36731 5.56727 5.64863 5.85133 5.89256 6.05428 6.06721 6.07768 6.29629 6.70077 6.79615 6.81208 7.28648 7.50414 8.84577 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.026865 B = 0.001758 C = 0.001750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.982005 B =15925.530322 C =15992.936356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.100 3.900 3 N -0.459 5.459 4 C 0.052 3.948 5 C 0.051 3.949 6 N -0.485 5.485 7 C 0.230 3.770 8 N -0.479 5.479 9 C 0.073 3.927 10 C 0.060 3.940 11 N -0.540 5.540 12 C 0.084 3.916 13 C -0.115 4.115 14 C 0.495 3.505 15 O -0.601 6.601 16 N -0.612 5.612 17 C 0.078 3.922 18 C 0.258 3.742 19 C -0.543 4.543 20 H 0.053 0.947 21 C 0.006 3.994 22 N -0.928 5.928 23 Si 0.968 3.032 24 H -0.260 1.260 25 H -0.278 1.278 26 H -0.278 1.278 27 C 0.054 3.946 28 C 0.072 3.928 29 H 0.086 0.914 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.205 0.795 33 H 0.198 0.802 34 H 0.047 0.953 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.045 0.955 38 H 0.065 0.935 39 H 0.030 0.970 40 H 0.116 0.884 41 H 0.114 0.886 42 H 0.071 0.929 43 H 0.063 0.937 44 H 0.095 0.905 45 H 0.023 0.977 46 H -0.003 1.003 47 H 0.267 0.733 48 H 0.044 0.956 49 H 0.099 0.901 50 H 0.046 0.954 51 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.066 31.640 -0.573 33.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.041 4.041 3 N -0.175 5.175 4 C -0.107 4.107 5 C -0.110 4.110 6 N -0.203 5.203 7 C -0.001 4.001 8 N -0.203 5.203 9 C -0.054 4.054 10 C -0.068 4.068 11 N -0.265 5.265 12 C -0.045 4.045 13 C -0.155 4.155 14 C 0.284 3.716 15 O -0.483 6.483 16 N -0.343 5.343 17 C -0.064 4.064 18 C 0.136 3.864 19 C -0.582 4.582 20 H 0.071 0.929 21 C -0.193 4.193 22 N -0.568 5.568 23 Si 0.792 3.208 24 H -0.184 1.184 25 H -0.203 1.203 26 H -0.203 1.203 27 C -0.073 4.073 28 C -0.055 4.055 29 H 0.104 0.896 30 H 0.096 0.904 31 H 0.106 0.894 32 H 0.221 0.779 33 H 0.214 0.786 34 H 0.065 0.935 35 H 0.101 0.899 36 H 0.105 0.895 37 H 0.063 0.937 38 H 0.083 0.917 39 H 0.048 0.952 40 H 0.134 0.866 41 H 0.132 0.868 42 H 0.090 0.910 43 H 0.082 0.918 44 H 0.113 0.887 45 H 0.041 0.959 46 H 0.015 0.985 47 H 0.076 0.924 48 H 0.063 0.937 49 H 0.117 0.883 50 H 0.065 0.935 51 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 10.518 31.338 -0.948 33.070 hybrid contribution 0.123 -1.200 -0.495 1.304 sum 10.641 30.138 -1.442 31.994 Atomic orbital electron populations 1.20594 0.86134 1.03839 1.03929 1.22357 0.99447 0.87376 0.94953 1.68411 1.10222 1.28773 1.10091 1.24328 0.90180 1.01325 0.94865 1.24144 1.03193 0.87615 0.96029 1.68511 1.09781 1.32201 1.09783 1.20724 0.87905 0.93018 0.98482 1.60381 1.52760 1.02619 1.04573 1.22079 0.98483 0.92611 0.92217 1.22143 0.98587 0.93632 0.92421 1.62138 1.57252 1.03960 1.03161 1.21574 0.95209 0.89421 0.98254 1.21550 1.01552 0.91086 1.01275 1.21373 0.82998 0.86707 0.80561 1.90635 1.38160 1.80653 1.38861 1.48203 1.40830 1.17168 1.28097 1.21935 0.91609 1.02422 0.90393 1.18746 0.91424 0.80237 0.95950 1.21684 1.07529 0.96320 1.32662 0.92860 1.25883 0.96036 1.00570 0.96818 1.70051 1.20842 1.20614 1.45290 0.85463 0.78985 0.77568 0.78771 1.18448 1.20317 1.20326 1.22287 0.97877 0.92745 0.94440 1.22133 0.99185 0.93729 0.90416 0.89551 0.90367 0.89415 0.77853 0.78560 0.93480 0.89901 0.89544 0.93715 0.91653 0.95193 0.86626 0.86836 0.91042 0.91767 0.88678 0.95914 0.98485 0.92415 0.93729 0.88312 0.93522 0.89488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.16 9.86 71.24 0.70 -0.46 16 2 C 0.10 1.71 6.81 42.79 0.29 2.01 16 3 N -0.46 -7.58 10.42 -182.76 -1.90 -9.49 16 4 C 0.05 0.58 11.21 84.62 0.95 1.52 16 5 C 0.05 0.61 11.22 84.63 0.95 1.56 16 6 N -0.49 -8.82 9.83 -192.64 -1.89 -10.71 16 7 C 0.23 4.19 5.32 133.01 0.71 4.90 16 8 N -0.48 -8.48 3.75 -700.95 -2.63 -11.10 16 9 C 0.07 1.34 5.41 86.31 0.47 1.81 16 10 C 0.06 1.18 5.61 86.31 0.48 1.67 16 11 N -0.54 -11.56 4.71 -895.72 -4.22 -15.78 16 12 C 0.08 2.26 4.25 86.30 0.37 2.62 16 13 C -0.11 -3.09 4.19 29.85 0.12 -2.97 16 14 C 0.49 20.37 7.67 87.65 0.67 21.05 16 15 O -0.60 -31.22 15.56 -3.04 -0.05 -31.27 16 16 N -0.61 -25.98 2.86 -851.14 -2.43 -28.41 16 17 C 0.08 2.30 10.25 127.77 1.31 3.60 16 18 C 0.26 14.12 5.16 85.63 0.44 14.56 16 19 C -0.54 -31.74 9.39 25.60 0.24 -31.50 16 20 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 21 C 0.01 0.34 5.46 84.65 0.46 0.80 16 22 N -0.93 -56.73 13.29 21.45 0.28 -56.45 16 23 Si 0.97 45.33 29.54 68.60 2.03 47.35 16 24 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 25 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 26 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 27 C 0.05 0.97 5.41 86.31 0.47 1.44 16 28 C 0.07 1.23 5.48 86.31 0.47 1.71 16 29 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.09 1.18 7.64 -2.39 -0.02 1.16 16 32 H 0.20 0.62 8.06 -2.91 -0.02 0.60 16 33 H 0.20 0.96 8.06 -2.91 -0.02 0.93 16 34 H 0.05 1.00 7.92 -2.38 -0.02 0.98 16 35 H 0.08 1.40 8.13 -2.39 -0.02 1.38 16 36 H 0.09 1.67 8.07 -2.39 -0.02 1.65 16 37 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.06 2.01 7.98 -2.39 -0.02 1.99 16 39 H 0.03 0.89 8.08 -2.39 -0.02 0.87 16 40 H 0.12 2.41 6.46 -2.39 -0.02 2.39 16 41 H 0.11 2.72 7.40 -2.39 -0.02 2.70 16 42 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 43 H 0.06 2.01 8.07 -2.39 -0.02 1.99 16 44 H 0.09 2.09 6.43 -2.38 -0.02 2.08 16 45 H 0.02 1.26 8.07 -2.39 -0.02 1.24 16 46 H 0.00 -0.19 7.42 -2.38 -0.02 -0.21 16 47 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 48 H 0.04 0.83 8.14 -2.38 -0.02 0.81 16 49 H 0.10 1.52 6.34 -2.39 -0.02 1.50 16 50 H 0.05 0.92 8.04 -2.39 -0.02 0.90 16 51 H 0.09 1.32 8.13 -2.38 -0.02 1.30 16 Total: -1.00 -79.23 411.08 -0.79 -80.02 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: 0.91 Total: 11.52 kcal Atomic # 6 Polarization: 15.21 SS G_CDS: 9.11 Total: 24.32 kcal Atomic # 7 Polarization: -119.15 SS G_CDS: -12.79 Total: -131.94 kcal Atomic # 8 Polarization: -31.22 SS G_CDS: -0.05 Total: -31.27 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.35 kcal Total: -79.23 -0.79 -80.02 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000374124484.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.495 kcal (2) G-P(sol) polarization free energy of solvation -79.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds