Wall clock time and date at job start Wed Apr 1 2020 04:50:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35236 * 126.07213 * 2 1 4 4 C 1.40396 * 107.86738 * 180.15651 * 3 2 1 5 5 N 1.40203 * 125.97476 * 179.82666 * 4 3 2 6 6 C 1.34777 * 119.99577 * 359.97438 * 5 4 3 7 7 O 1.21593 * 120.00264 * 359.71878 * 6 5 4 8 8 N 1.34775 * 119.99585 * 179.72010 * 6 5 4 9 9 C 1.46507 * 119.99876 * 179.97438 * 8 6 5 10 10 H 1.08993 * 109.24379 * 325.54688 * 9 8 6 11 11 C 1.52828 * 109.24561 * 85.00321 * 9 8 6 12 12 C 1.53635 * 110.63874 * 174.16616 * 11 9 8 13 13 N 1.45539 * 107.85989 * 302.86243 * 12 11 9 14 14 C 1.46328 * 117.22495 * 185.56497 * 13 12 11 15 15 C 1.54801 * 105.96015 * 208.04880 * 14 13 12 16 16 C 1.55334 * 104.99182 * 3.64902 * 15 14 13 17 17 C 1.48664 * 109.71772 * 65.32312 * 13 12 11 18 18 H 1.09005 * 111.10854 * 52.55247 * 17 13 12 19 19 C 1.52370 * 107.34281 * 290.46626 * 17 13 12 20 20 N 1.31212 * 108.05415 * 359.57039 * 4 3 2 21 21 N 1.34959 * 126.06690 * 179.67984 * 2 1 3 22 22 C 1.46499 * 125.98046 * 0.02562 * 21 2 1 23 23 C 1.50705 * 109.47270 * 269.97351 * 22 21 2 24 24 H 1.08001 * 119.99426 * 0.02562 * 23 22 21 25 25 C 1.37876 * 120.00136 * 179.97438 * 23 22 21 26 26 N 1.31514 * 120.00005 * 359.97438 * 25 23 22 27 27 Si 1.86803 * 119.99620 * 179.97438 * 25 23 22 28 28 H 1.48501 * 109.46851 * 90.00172 * 27 25 23 29 29 H 1.48504 * 109.46957 * 209.99948 * 27 25 23 30 30 H 1.48492 * 109.47450 * 330.00273 * 27 25 23 31 31 H 1.09002 * 109.47194 * 270.32264 * 1 2 3 32 32 H 1.09003 * 109.46867 * 30.31656 * 1 2 3 33 33 H 1.08995 * 109.47646 * 150.31612 * 1 2 3 34 34 H 1.08002 * 126.06969 * 0.02562 * 3 2 1 35 35 H 0.97001 * 119.99877 * 179.71373 * 5 4 3 36 36 H 0.97000 * 120.00523 * 0.02562 * 8 6 5 37 37 H 1.08999 * 109.24097 * 294.46482 * 11 9 8 38 38 H 1.09001 * 109.23897 * 53.86615 * 11 9 8 39 39 H 1.08998 * 109.78859 * 62.45586 * 12 11 9 40 40 H 1.09001 * 109.78232 * 183.27660 * 12 11 9 41 41 H 1.08993 * 110.15755 * 327.17243 * 14 13 12 42 42 H 1.09007 * 110.15368 * 88.93058 * 14 13 12 43 43 H 1.08997 * 110.33488 * 122.52504 * 15 14 13 44 44 H 1.09003 * 110.33983 * 244.66495 * 15 14 13 45 45 H 1.09001 * 110.90570 * 140.38854 * 16 15 14 46 46 H 1.08993 * 110.90760 * 263.96333 * 16 15 14 47 47 H 1.08993 * 109.83387 * 303.29415 * 19 17 13 48 48 H 1.08998 * 109.82851 * 182.34683 * 19 17 13 49 49 H 1.09006 * 109.47055 * 29.97327 * 22 21 2 50 50 H 1.08997 * 109.47616 * 149.97083 * 22 21 2 51 51 H 0.97004 * 119.99448 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3033 1.0931 0.0000 4 6 3.6370 0.6545 -0.0037 5 7 4.7738 1.4750 -0.0083 6 6 4.6370 2.8158 -0.0101 7 8 3.5278 3.3138 -0.0128 8 7 5.7299 3.6046 -0.0088 9 6 5.5812 5.0621 -0.0113 10 1 4.7020 5.3325 -0.5958 11 6 5.4019 5.5526 1.4249 12 6 5.3881 7.0881 1.4750 13 7 6.6306 7.5651 0.8861 14 6 6.8887 9.0044 0.9420 15 6 7.7826 9.3243 -0.2807 16 6 7.9094 7.9799 -1.0485 17 6 6.6705 7.2100 -0.5569 18 1 5.7706 7.5494 -1.0698 19 6 6.8268 5.6971 -0.6482 20 7 3.6336 -0.6576 0.0036 21 7 2.3016 -1.0909 0.0061 22 6 1.8500 -2.4845 0.0134 23 6 1.6953 -2.9551 1.4367 24 1 1.9113 -2.2830 2.2540 25 6 1.2770 -4.2432 1.6953 26 7 1.0125 -5.0610 0.6999 27 14 1.0859 -4.8265 3.4596 28 1 -0.2964 -4.5489 3.9257 29 1 1.3480 -6.2866 3.5293 30 1 2.0542 -4.1079 4.3262 31 1 -0.3634 0.0058 1.0277 32 1 -0.3633 0.8872 -0.5188 33 1 -0.3634 -0.8927 -0.5089 34 1 1.9721 2.1211 0.0004 35 1 5.6587 1.0777 -0.0064 36 1 6.6148 3.2074 -0.0070 37 1 4.4599 5.1718 1.8196 38 1 6.2237 5.1806 2.0368 39 1 4.5401 7.4683 0.9054 40 1 5.3180 7.4229 2.5100 41 1 5.9514 9.5568 0.8766 42 1 7.4106 9.2568 1.8651 43 1 7.3080 10.0768 -0.9103 44 1 8.7634 9.6691 0.0470 45 1 7.8649 8.1415 -2.1255 46 1 8.8264 7.4594 -0.7726 47 1 7.7194 5.3842 -0.1066 48 1 6.9025 5.3956 -1.6929 49 1 0.8913 -2.5585 -0.5001 50 1 2.5846 -3.1072 -0.4973 51 1 0.7186 -5.9673 0.8820 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000375051965.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:50:20 Heat of formation + Delta-G solvation = 52.522186 kcal Electronic energy + Delta-G solvation = -30171.055147 eV Core-core repulsion = 26106.778651 eV Total energy + Delta-G solvation = -4064.276496 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.86239 -40.37338 -39.38655 -36.20675 -34.66395 -33.59584 -33.23106 -32.05295 -31.25283 -30.68919 -29.22153 -27.39158 -26.49426 -26.25818 -23.58733 -23.11101 -22.25283 -21.40638 -20.89019 -20.46740 -19.74183 -19.48253 -17.71318 -16.66665 -16.51661 -16.24422 -15.99068 -15.55753 -15.45000 -15.19821 -14.88857 -14.43424 -14.31798 -14.04260 -14.00873 -13.56774 -13.38101 -13.04713 -12.94542 -12.75290 -12.45423 -12.25026 -12.18062 -11.94177 -11.68669 -11.64161 -11.53964 -11.42910 -11.37167 -11.10053 -11.03423 -10.95414 -10.80992 -10.77743 -10.40537 -10.22575 -9.96666 -9.62318 -9.50577 -9.17124 -8.69647 -8.62309 -7.87564 -7.36615 -6.23333 -4.30700 2.41176 2.68919 3.13784 3.22564 3.28922 3.34547 3.54512 3.62567 3.87381 4.11383 4.21359 4.30294 4.38499 4.51457 4.54469 4.72053 4.82802 4.90679 4.98853 5.09569 5.10329 5.14591 5.21426 5.38641 5.39882 5.43866 5.44803 5.48495 5.58996 5.62304 5.73829 5.75625 5.78507 5.89947 5.96081 6.04972 6.14650 6.25734 6.36791 6.49528 6.58178 6.65855 6.66188 6.87597 6.98030 7.08585 7.18947 7.56837 7.69668 7.91615 8.00048 8.10714 8.64567 8.71127 8.79001 9.35433 10.83792 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.026044 B = 0.001776 C = 0.001760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.839054 B =15758.432748 C =15901.526650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.090 3.910 3 C -0.289 4.289 4 C 0.283 3.717 5 N -0.644 5.644 6 C 0.713 3.287 7 O -0.567 6.567 8 N -0.741 5.741 9 C 0.167 3.833 10 H 0.086 0.914 11 C -0.127 4.127 12 C 0.064 3.936 13 N -0.538 5.538 14 C 0.049 3.951 15 C -0.129 4.129 16 C -0.115 4.115 17 C 0.068 3.932 18 H 0.058 0.942 19 C -0.111 4.111 20 N -0.325 5.325 21 N -0.318 5.318 22 C 0.259 3.741 23 C -0.534 4.534 24 H 0.064 0.936 25 C 0.065 3.935 26 N -0.892 5.892 27 Si 0.906 3.094 28 H -0.277 1.277 29 H -0.283 1.283 30 H -0.272 1.272 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.160 0.840 35 H 0.406 0.594 36 H 0.396 0.604 37 H 0.076 0.924 38 H 0.072 0.928 39 H 0.036 0.964 40 H 0.077 0.923 41 H 0.038 0.962 42 H 0.077 0.923 43 H 0.066 0.934 44 H 0.072 0.928 45 H 0.071 0.929 46 H 0.077 0.923 47 H 0.080 0.920 48 H 0.074 0.926 49 H 0.054 0.946 50 H 0.051 0.949 51 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.443 26.834 -3.316 29.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.041 4.041 3 C -0.320 4.320 4 C 0.029 3.971 5 N -0.294 5.294 6 C 0.412 3.588 7 O -0.442 6.442 8 N -0.396 5.396 9 C 0.062 3.938 10 H 0.104 0.896 11 C -0.166 4.166 12 C -0.064 4.064 13 N -0.264 5.264 14 C -0.079 4.079 15 C -0.167 4.167 16 C -0.153 4.153 17 C -0.040 4.040 18 H 0.076 0.924 19 C -0.149 4.149 20 N -0.155 5.155 21 N -0.101 5.101 22 C 0.141 3.859 23 C -0.573 4.573 24 H 0.082 0.918 25 C -0.138 4.138 26 N -0.530 5.530 27 Si 0.733 3.267 28 H -0.203 1.203 29 H -0.209 1.209 30 H -0.197 1.197 31 H 0.095 0.905 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.177 0.823 35 H 0.240 0.760 36 H 0.230 0.770 37 H 0.095 0.905 38 H 0.091 0.909 39 H 0.055 0.945 40 H 0.095 0.905 41 H 0.057 0.943 42 H 0.095 0.905 43 H 0.085 0.915 44 H 0.091 0.909 45 H 0.090 0.910 46 H 0.096 0.904 47 H 0.099 0.901 48 H 0.093 0.907 49 H 0.072 0.928 50 H 0.070 0.930 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 12.389 25.695 -3.056 28.689 hybrid contribution -0.297 0.186 0.687 0.771 sum 12.092 25.881 -2.369 28.665 Atomic orbital electron populations 1.20324 0.87970 1.02759 1.03107 1.21052 0.94861 0.87197 1.01024 1.21224 0.89710 0.99781 1.21300 1.18664 0.86582 0.89242 1.02592 1.41416 1.07562 1.03773 1.76664 1.15657 0.84852 0.80366 0.77893 1.90864 1.23550 1.73451 1.56357 1.45124 1.07524 1.06218 1.80716 1.20857 0.98861 0.77632 0.96442 0.89628 1.22027 1.03239 0.94198 0.97106 1.21896 0.89493 0.95214 0.99823 1.62792 1.35425 1.14387 1.13798 1.22490 0.98483 0.87778 0.99114 1.22633 1.00256 0.97532 0.96252 1.22363 0.98061 0.95446 0.99413 1.22507 0.97954 0.94801 0.88738 0.92401 1.21791 0.98119 0.93857 1.01173 1.77248 0.99921 1.08362 1.29987 1.48944 1.00902 1.07710 1.52522 1.19671 0.95937 0.71419 0.98872 1.21329 1.46617 0.97941 0.91410 0.91772 1.24925 0.94727 0.96061 0.98099 1.69923 1.44994 1.06985 1.31111 0.86361 0.78651 0.77869 0.83838 1.20317 1.20895 1.19722 0.90484 0.90872 0.90912 0.82264 0.75974 0.76978 0.90546 0.90947 0.94540 0.90467 0.94338 0.90454 0.91509 0.90930 0.90982 0.90406 0.90110 0.90711 0.92832 0.93049 0.92298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.46 10.11 36.01 0.36 -1.09 16 2 C 0.09 1.94 6.92 -82.28 -0.57 1.37 16 3 C -0.29 -6.09 9.52 -39.84 -0.38 -6.47 16 4 C 0.28 5.87 8.11 -154.35 -1.25 4.61 16 5 N -0.64 -10.19 5.46 -15.50 -0.08 -10.28 16 6 C 0.71 10.59 8.49 -86.92 -0.74 9.85 16 7 O -0.57 -10.34 13.12 5.28 0.07 -10.27 16 8 N -0.74 -7.49 5.06 -58.44 -0.30 -7.79 16 9 C 0.17 1.56 2.51 -67.69 -0.17 1.39 16 10 H 0.09 0.97 7.55 -51.93 -0.39 0.58 16 11 C -0.13 -1.20 5.62 -26.49 -0.15 -1.34 16 12 C 0.06 0.53 5.85 -4.23 -0.02 0.51 16 13 N -0.54 -4.11 4.65 -225.06 -1.05 -5.16 16 14 C 0.05 0.31 6.86 -3.19 -0.02 0.29 16 15 C -0.13 -0.66 6.99 -24.54 -0.17 -0.84 16 16 C -0.11 -0.63 6.61 -25.01 -0.17 -0.79 16 17 C 0.07 0.47 2.63 -66.58 -0.18 0.29 16 18 H 0.06 0.43 8.06 -51.93 -0.42 0.01 16 19 C -0.11 -0.76 5.14 -26.73 -0.14 -0.90 16 20 N -0.32 -7.61 12.59 31.44 0.40 -7.21 16 21 N -0.32 -7.67 3.59 -58.33 -0.21 -7.88 16 22 C 0.26 6.71 5.99 -5.19 -0.03 6.68 16 23 C -0.53 -14.87 9.39 -34.44 -0.32 -15.19 16 24 H 0.06 1.85 7.81 -52.49 -0.41 1.44 16 25 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 26 N -0.89 -25.20 13.29 55.43 0.74 -24.47 16 27 Si 0.91 21.28 29.54 -169.99 -5.02 16.26 16 28 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 29 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 30 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 31 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 32 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.07 1.27 7.07 -51.93 -0.37 0.91 16 34 H 0.16 3.30 5.91 -52.49 -0.31 2.99 16 35 H 0.41 5.13 8.84 -40.82 -0.36 4.77 16 36 H 0.40 2.89 8.62 -40.82 -0.35 2.54 16 37 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.04 0.31 8.05 -51.93 -0.42 -0.11 16 40 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.04 0.24 8.04 -51.93 -0.42 -0.17 16 42 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 44 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 46 H 0.08 0.43 8.10 -51.93 -0.42 0.01 16 47 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 48 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 49 H 0.05 1.37 7.04 -51.93 -0.37 1.01 16 50 H 0.05 1.42 8.14 -51.93 -0.42 0.99 16 51 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 405.90 15.07 6.12 6.12 Total: -1.00 -32.89 405.90 -11.82 -44.71 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: -8.44 Total: 5.91 kcal Atomic # 6 Polarization: 4.09 SS G_CDS: -4.04 Total: 0.05 kcal Atomic # 7 Polarization: -62.27 SS G_CDS: -0.50 Total: -62.78 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: 0.07 Total: -10.27 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -32.89 -11.82 -44.71 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000375051965.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.227 kcal (2) G-P(sol) polarization free energy of solvation -32.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds