Wall clock time and date at job start Wed Apr 1 2020 04:50:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35236 * 126.07213 * 2 1 4 4 C 1.40396 * 107.86738 * 180.15651 * 3 2 1 5 5 N 1.40203 * 125.97476 * 179.82666 * 4 3 2 6 6 C 1.34777 * 119.99577 * 359.97438 * 5 4 3 7 7 O 1.21593 * 120.00264 * 359.71878 * 6 5 4 8 8 N 1.34775 * 119.99585 * 179.72010 * 6 5 4 9 9 C 1.46507 * 119.99876 * 179.97438 * 8 6 5 10 10 H 1.08993 * 109.24379 * 325.54688 * 9 8 6 11 11 C 1.52828 * 109.24561 * 85.00321 * 9 8 6 12 12 C 1.53635 * 110.63874 * 174.16616 * 11 9 8 13 13 N 1.45539 * 107.85989 * 302.86243 * 12 11 9 14 14 C 1.46328 * 117.22495 * 185.56497 * 13 12 11 15 15 C 1.54801 * 105.96015 * 208.04880 * 14 13 12 16 16 C 1.55334 * 104.99182 * 3.64902 * 15 14 13 17 17 C 1.48664 * 109.71772 * 65.32312 * 13 12 11 18 18 H 1.09005 * 111.10854 * 52.55247 * 17 13 12 19 19 C 1.52370 * 107.34281 * 290.46626 * 17 13 12 20 20 N 1.31212 * 108.05415 * 359.57039 * 4 3 2 21 21 N 1.34959 * 126.06690 * 179.67984 * 2 1 3 22 22 C 1.46499 * 125.98046 * 0.02562 * 21 2 1 23 23 C 1.50705 * 109.47270 * 269.97351 * 22 21 2 24 24 H 1.08001 * 119.99426 * 0.02562 * 23 22 21 25 25 C 1.37876 * 120.00136 * 179.97438 * 23 22 21 26 26 N 1.31514 * 120.00005 * 359.97438 * 25 23 22 27 27 Si 1.86803 * 119.99620 * 179.97438 * 25 23 22 28 28 H 1.48501 * 109.46851 * 90.00172 * 27 25 23 29 29 H 1.48504 * 109.46957 * 209.99948 * 27 25 23 30 30 H 1.48492 * 109.47450 * 330.00273 * 27 25 23 31 31 H 1.09002 * 109.47194 * 270.32264 * 1 2 3 32 32 H 1.09003 * 109.46867 * 30.31656 * 1 2 3 33 33 H 1.08995 * 109.47646 * 150.31612 * 1 2 3 34 34 H 1.08002 * 126.06969 * 0.02562 * 3 2 1 35 35 H 0.97001 * 119.99877 * 179.71373 * 5 4 3 36 36 H 0.97000 * 120.00523 * 0.02562 * 8 6 5 37 37 H 1.08999 * 109.24097 * 294.46482 * 11 9 8 38 38 H 1.09001 * 109.23897 * 53.86615 * 11 9 8 39 39 H 1.08998 * 109.78859 * 62.45586 * 12 11 9 40 40 H 1.09001 * 109.78232 * 183.27660 * 12 11 9 41 41 H 1.08993 * 110.15755 * 327.17243 * 14 13 12 42 42 H 1.09007 * 110.15368 * 88.93058 * 14 13 12 43 43 H 1.08997 * 110.33488 * 122.52504 * 15 14 13 44 44 H 1.09003 * 110.33983 * 244.66495 * 15 14 13 45 45 H 1.09001 * 110.90570 * 140.38854 * 16 15 14 46 46 H 1.08993 * 110.90760 * 263.96333 * 16 15 14 47 47 H 1.08993 * 109.83387 * 303.29415 * 19 17 13 48 48 H 1.08998 * 109.82851 * 182.34683 * 19 17 13 49 49 H 1.09006 * 109.47055 * 29.97327 * 22 21 2 50 50 H 1.08997 * 109.47616 * 149.97083 * 22 21 2 51 51 H 0.97004 * 119.99448 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3033 1.0931 0.0000 4 6 3.6370 0.6545 -0.0037 5 7 4.7738 1.4750 -0.0083 6 6 4.6370 2.8158 -0.0101 7 8 3.5278 3.3138 -0.0128 8 7 5.7299 3.6046 -0.0088 9 6 5.5812 5.0621 -0.0113 10 1 4.7020 5.3325 -0.5958 11 6 5.4019 5.5526 1.4249 12 6 5.3881 7.0881 1.4750 13 7 6.6306 7.5651 0.8861 14 6 6.8887 9.0044 0.9420 15 6 7.7826 9.3243 -0.2807 16 6 7.9094 7.9799 -1.0485 17 6 6.6705 7.2100 -0.5569 18 1 5.7706 7.5494 -1.0698 19 6 6.8268 5.6971 -0.6482 20 7 3.6336 -0.6576 0.0036 21 7 2.3016 -1.0909 0.0061 22 6 1.8500 -2.4845 0.0134 23 6 1.6953 -2.9551 1.4367 24 1 1.9113 -2.2830 2.2540 25 6 1.2770 -4.2432 1.6953 26 7 1.0125 -5.0610 0.6999 27 14 1.0859 -4.8265 3.4596 28 1 -0.2964 -4.5489 3.9257 29 1 1.3480 -6.2866 3.5293 30 1 2.0542 -4.1079 4.3262 31 1 -0.3634 0.0058 1.0277 32 1 -0.3633 0.8872 -0.5188 33 1 -0.3634 -0.8927 -0.5089 34 1 1.9721 2.1211 0.0004 35 1 5.6587 1.0777 -0.0064 36 1 6.6148 3.2074 -0.0070 37 1 4.4599 5.1718 1.8196 38 1 6.2237 5.1806 2.0368 39 1 4.5401 7.4683 0.9054 40 1 5.3180 7.4229 2.5100 41 1 5.9514 9.5568 0.8766 42 1 7.4106 9.2568 1.8651 43 1 7.3080 10.0768 -0.9103 44 1 8.7634 9.6691 0.0470 45 1 7.8649 8.1415 -2.1255 46 1 8.8264 7.4594 -0.7726 47 1 7.7194 5.3842 -0.1066 48 1 6.9025 5.3956 -1.6929 49 1 0.8913 -2.5585 -0.5001 50 1 2.5846 -3.1072 -0.4973 51 1 0.7186 -5.9673 0.8820 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000375051965.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:50:19 Heat of formation + Delta-G solvation = 31.010396 kcal Electronic energy + Delta-G solvation = -30171.987968 eV Core-core repulsion = 26106.778651 eV Total energy + Delta-G solvation = -4065.209317 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.31880 -41.35684 -40.44574 -37.11853 -36.14789 -35.31388 -34.22252 -33.13477 -32.67627 -32.26360 -29.88590 -28.62940 -27.90193 -27.73790 -25.10156 -24.11508 -23.41467 -22.11325 -21.64805 -21.46961 -21.12041 -20.75511 -19.02828 -18.75325 -17.79243 -17.23975 -16.88839 -16.63463 -16.60905 -16.34913 -15.92163 -15.89665 -15.77247 -15.40063 -14.81669 -14.66368 -14.41037 -14.24841 -14.00689 -13.79155 -13.68798 -13.58015 -13.51098 -13.30516 -13.13550 -12.85887 -12.65590 -12.52071 -12.26535 -12.21813 -12.16172 -12.09828 -11.99179 -11.66256 -11.57016 -11.50502 -11.39987 -11.33928 -11.09984 -10.72473 -10.16650 -9.55287 -9.29026 -9.06618 -8.31799 -6.49499 1.03185 1.12405 1.37977 1.38827 1.50437 1.67883 2.08517 2.35625 2.40551 2.97472 2.98264 3.11994 3.55264 3.70728 3.86647 3.93298 4.01611 4.12243 4.17999 4.24157 4.31721 4.35859 4.43728 4.45426 4.49139 4.70137 4.72604 4.77490 4.80832 4.85328 4.90059 4.90385 4.97622 5.00342 5.02594 5.04030 5.08387 5.13887 5.15722 5.21830 5.25406 5.35001 5.37187 5.54506 5.55484 5.82087 5.89243 5.98920 6.02685 6.28212 6.28237 6.62428 6.77371 7.14956 7.21313 7.44972 8.73804 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.026044 B = 0.001776 C = 0.001760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.839054 B =15758.432748 C =15901.526650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.087 3.913 3 C -0.298 4.298 4 C 0.293 3.707 5 N -0.636 5.636 6 C 0.712 3.288 7 O -0.601 6.601 8 N -0.717 5.717 9 C 0.168 3.832 10 H 0.065 0.935 11 C -0.120 4.120 12 C 0.069 3.931 13 N -0.545 5.545 14 C 0.045 3.955 15 C -0.126 4.126 16 C -0.111 4.111 17 C 0.065 3.935 18 H 0.051 0.949 19 C -0.100 4.100 20 N -0.360 5.360 21 N -0.343 5.343 22 C 0.275 3.725 23 C -0.552 4.552 24 H 0.048 0.952 25 C 0.023 3.977 26 N -0.917 5.917 27 Si 0.971 3.029 28 H -0.265 1.265 29 H -0.274 1.274 30 H -0.277 1.277 31 H 0.083 0.917 32 H 0.105 0.895 33 H 0.069 0.931 34 H 0.165 0.835 35 H 0.421 0.579 36 H 0.414 0.586 37 H 0.050 0.950 38 H 0.075 0.925 39 H 0.030 0.970 40 H 0.081 0.919 41 H 0.036 0.964 42 H 0.080 0.920 43 H 0.073 0.927 44 H 0.081 0.919 45 H 0.083 0.917 46 H 0.080 0.920 47 H 0.090 0.910 48 H 0.086 0.914 49 H 0.052 0.948 50 H 0.025 0.975 51 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.550 28.305 -2.925 31.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.044 4.044 3 C -0.329 4.329 4 C 0.038 3.962 5 N -0.288 5.288 6 C 0.411 3.589 7 O -0.478 6.478 8 N -0.373 5.373 9 C 0.063 3.937 10 H 0.084 0.916 11 C -0.160 4.160 12 C -0.060 4.060 13 N -0.270 5.270 14 C -0.083 4.083 15 C -0.164 4.164 16 C -0.149 4.149 17 C -0.043 4.043 18 H 0.069 0.931 19 C -0.139 4.139 20 N -0.191 5.191 21 N -0.126 5.126 22 C 0.156 3.844 23 C -0.591 4.591 24 H 0.067 0.933 25 C -0.178 4.178 26 N -0.556 5.556 27 Si 0.795 3.205 28 H -0.190 1.190 29 H -0.199 1.199 30 H -0.202 1.202 31 H 0.101 0.899 32 H 0.123 0.877 33 H 0.088 0.912 34 H 0.183 0.817 35 H 0.258 0.742 36 H 0.251 0.749 37 H 0.069 0.931 38 H 0.093 0.907 39 H 0.048 0.952 40 H 0.099 0.901 41 H 0.055 0.945 42 H 0.098 0.902 43 H 0.092 0.908 44 H 0.099 0.901 45 H 0.101 0.899 46 H 0.099 0.901 47 H 0.109 0.891 48 H 0.104 0.896 49 H 0.070 0.930 50 H 0.043 0.957 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 13.557 27.203 -2.677 30.512 hybrid contribution -0.587 -0.132 0.537 0.806 sum 12.970 27.071 -2.140 30.094 Atomic orbital electron populations 1.20460 0.85408 1.04163 1.03906 1.21727 0.96624 0.86477 0.99557 1.21388 0.90010 0.99819 1.21691 1.18948 0.88087 0.88889 1.00304 1.41404 1.07042 1.03836 1.76512 1.15828 0.85424 0.80047 0.77589 1.90835 1.25299 1.73875 1.57827 1.44994 1.07139 1.06256 1.78880 1.20958 0.99599 0.76799 0.96340 0.91642 1.21927 1.01898 0.95161 0.96966 1.21801 0.89845 0.94233 1.00127 1.62813 1.34632 1.15323 1.14246 1.22567 0.98762 0.86930 0.99992 1.22638 1.00467 0.97592 0.95673 1.22363 0.97187 0.95213 1.00112 1.22564 0.98551 0.94812 0.88370 0.93135 1.21737 0.96790 0.93671 1.01653 1.77168 1.00037 1.09747 1.32158 1.48746 1.01670 1.07451 1.54693 1.19245 0.94935 0.72453 0.97757 1.21434 1.47487 0.98374 0.91774 0.93322 1.25721 0.93972 0.95884 1.02225 1.70003 1.45066 1.07428 1.33066 0.85363 0.78938 0.77569 0.78652 1.18964 1.19854 1.20161 0.89867 0.87665 0.91239 0.81741 0.74160 0.74884 0.93074 0.90678 0.95172 0.90091 0.94535 0.90201 0.90841 0.90051 0.89858 0.90120 0.89127 0.89582 0.92990 0.95721 0.91751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.79 10.11 71.24 0.72 -2.07 16 2 C 0.09 3.74 6.92 41.39 0.29 4.03 16 3 C -0.30 -12.60 9.52 22.10 0.21 -12.39 16 4 C 0.29 12.21 8.11 133.31 1.08 13.30 16 5 N -0.64 -19.76 5.46 -321.22 -1.75 -21.51 16 6 C 0.71 20.67 8.49 179.05 1.52 22.19 16 7 O -0.60 -21.88 13.12 -4.01 -0.05 -21.94 16 8 N -0.72 -13.53 5.06 -457.06 -2.31 -15.84 16 9 C 0.17 2.95 2.51 45.15 0.11 3.07 16 10 H 0.07 1.47 7.55 -2.39 -0.02 1.45 16 11 C -0.12 -2.22 5.62 30.75 0.17 -2.04 16 12 C 0.07 1.09 5.85 86.77 0.51 1.60 16 13 N -0.54 -7.51 4.65 -865.94 -4.03 -11.54 16 14 C 0.05 0.50 6.86 87.03 0.60 1.10 16 15 C -0.13 -1.01 6.99 32.01 0.22 -0.79 16 16 C -0.11 -0.93 6.61 31.71 0.21 -0.72 16 17 C 0.07 0.78 2.63 44.68 0.12 0.90 16 18 H 0.05 0.69 8.06 -2.38 -0.02 0.67 16 19 C -0.10 -1.16 5.14 30.60 0.16 -1.00 16 20 N -0.36 -17.25 12.59 -54.43 -0.69 -17.93 16 21 N -0.34 -16.94 3.59 -338.44 -1.22 -18.16 16 22 C 0.27 14.75 5.99 85.63 0.51 15.26 16 23 C -0.55 -31.35 9.39 25.60 0.24 -31.11 16 24 H 0.05 2.86 7.81 -2.91 -0.02 2.83 16 25 C 0.02 1.27 5.46 84.65 0.46 1.73 16 26 N -0.92 -52.10 13.29 21.45 0.28 -51.81 16 27 Si 0.97 43.45 29.54 68.60 2.03 45.47 16 28 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 29 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 30 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 31 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 32 H 0.10 2.89 8.14 -2.39 -0.02 2.87 16 33 H 0.07 2.42 7.07 -2.39 -0.02 2.40 16 34 H 0.17 6.80 5.91 -2.91 -0.02 6.79 16 35 H 0.42 10.21 8.84 -92.71 -0.82 9.39 16 36 H 0.41 5.10 8.62 -92.71 -0.80 4.30 16 37 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.03 0.51 8.05 -2.39 -0.02 0.49 16 40 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.04 0.42 8.04 -2.39 -0.02 0.40 16 42 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 43 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 44 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 45 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 46 H 0.08 0.66 8.10 -2.39 -0.02 0.64 16 47 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 48 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 49 H 0.05 2.75 7.04 -2.38 -0.02 2.74 16 50 H 0.02 1.43 8.14 -2.39 -0.02 1.41 16 51 H 0.27 14.48 8.31 -92.71 -0.77 13.71 16 Total: -1.00 -71.70 405.90 -1.27 -72.97 By element: Atomic # 1 Polarization: 27.91 SS G_CDS: -0.67 Total: 27.24 kcal Atomic # 6 Polarization: 5.91 SS G_CDS: 7.13 Total: 13.04 kcal Atomic # 7 Polarization: -127.08 SS G_CDS: -9.71 Total: -136.79 kcal Atomic # 8 Polarization: -21.88 SS G_CDS: -0.05 Total: -21.94 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.47 kcal Total: -71.70 -1.27 -72.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000375051965.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.982 kcal (2) G-P(sol) polarization free energy of solvation -71.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.972 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds