Wall clock time and date at job start Wed Apr 1 2020 04:50:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.35241 * 126.07248 * 2 1 4 4 C 1.40401 * 107.86876 * 180.16117 * 3 2 1 5 5 N 1.40196 * 125.97444 * 179.82880 * 4 3 2 6 6 C 1.34774 * 119.99707 * 359.70912 * 5 4 3 7 7 O 1.21589 * 120.00242 * 0.02562 * 6 5 4 8 8 N 1.34783 * 119.99548 * 179.97438 * 6 5 4 9 9 C 1.46505 * 119.99731 * 179.97438 * 8 6 5 10 10 H 1.09000 * 109.24265 * 34.46597 * 9 8 6 11 11 C 1.52823 * 109.25053 * 275.00643 * 9 8 6 12 12 C 1.53627 * 110.64516 * 293.61201 * 11 9 8 13 13 N 1.45528 * 107.86736 * 302.86939 * 12 11 9 14 14 C 1.46333 * 117.22186 * 185.54253 * 13 12 11 15 15 C 1.54808 * 105.96377 * 208.06588 * 14 13 12 16 16 C 1.55331 * 104.99018 * 3.64853 * 15 14 13 17 17 C 1.48664 * 109.71004 * 65.31736 * 13 12 11 18 18 H 1.09002 * 111.11114 * 52.54612 * 17 13 12 19 19 C 1.52281 * 108.89728 * 153.92775 * 9 8 6 20 20 N 1.31213 * 108.05543 * 359.55834 * 4 3 2 21 21 N 1.34966 * 126.06658 * 179.67909 * 2 1 3 22 22 C 1.46496 * 125.97931 * 359.97438 * 21 2 1 23 23 C 1.50701 * 109.47251 * 269.99774 * 22 21 2 24 24 H 1.08004 * 119.99545 * 0.02562 * 23 22 21 25 25 C 1.37875 * 119.99777 * 179.97438 * 23 22 21 26 26 N 1.31508 * 120.00510 * 0.02562 * 25 23 22 27 27 Si 1.86804 * 119.99647 * 180.02562 * 25 23 22 28 28 H 1.48502 * 109.47048 * 90.00093 * 27 25 23 29 29 H 1.48499 * 109.47203 * 209.99938 * 27 25 23 30 30 H 1.48496 * 109.47060 * 330.00273 * 27 25 23 31 31 H 1.09004 * 109.47104 * 270.32157 * 1 2 3 32 32 H 1.08997 * 109.47368 * 30.31936 * 1 2 3 33 33 H 1.09002 * 109.47757 * 150.32196 * 1 2 3 34 34 H 1.07999 * 126.06479 * 359.97438 * 3 2 1 35 35 H 0.96994 * 119.99962 * 179.71352 * 5 4 3 36 36 H 0.96994 * 120.00121 * 0.02562 * 8 6 5 37 37 H 1.09003 * 109.23609 * 173.31197 * 11 9 8 38 38 H 1.09000 * 109.21080 * 53.90175 * 11 9 8 39 39 H 1.09006 * 109.77988 * 183.27694 * 12 11 9 40 40 H 1.09003 * 109.82864 * 62.49118 * 12 11 9 41 41 H 1.08998 * 110.15653 * 327.18648 * 14 13 12 42 42 H 1.08997 * 110.15634 * 88.87384 * 14 13 12 43 43 H 1.09004 * 110.33527 * 122.52469 * 15 14 13 44 44 H 1.09000 * 110.33797 * 244.76851 * 15 14 13 45 45 H 1.08998 * 110.90515 * 264.00260 * 16 15 14 46 46 H 1.08993 * 110.90816 * 140.39663 * 16 15 14 47 47 H 1.09004 * 109.96059 * 304.22492 * 19 9 8 48 48 H 1.08997 * 109.02223 * 183.70504 * 19 9 8 49 49 H 1.08999 * 109.47099 * 30.00245 * 22 21 2 50 50 H 1.09003 * 109.46980 * 150.00328 * 22 21 2 51 51 H 0.96999 * 120.00712 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3033 1.0931 0.0000 4 6 3.6370 0.6545 -0.0038 5 7 4.7738 1.4750 -0.0084 6 6 4.6370 2.8158 -0.0154 7 8 3.5277 3.3138 -0.0174 8 7 5.7298 3.6046 -0.0194 9 6 5.5812 5.0621 -0.0276 10 1 4.7004 5.3366 0.5528 11 6 5.4055 5.5425 -1.4677 12 6 6.6875 5.3017 -2.2792 13 7 7.7788 5.9879 -1.6041 14 6 9.0800 5.9968 -2.2735 15 6 10.1376 6.0966 -1.1474 16 6 9.3232 6.0454 0.1743 17 6 8.0194 5.3628 -0.2769 18 1 8.1544 4.2851 -0.3692 19 6 6.8183 5.6876 0.6027 20 7 3.6336 -0.6576 0.0037 21 7 2.3015 -1.0910 0.0061 22 6 1.8499 -2.4846 0.0144 23 6 1.6957 -2.9541 1.4381 24 1 1.9119 -2.2815 2.2550 25 6 1.2774 -4.2420 1.6977 26 7 1.0136 -5.0608 0.7030 27 14 1.0855 -4.8238 3.4624 28 1 -0.2972 -4.5460 3.9276 29 1 1.3477 -6.2838 3.5336 30 1 2.0532 -4.1042 4.3288 31 1 -0.3633 0.0058 1.0277 32 1 -0.3634 0.8871 -0.5188 33 1 -0.3635 -0.8928 -0.5088 34 1 1.9720 2.1210 -0.0004 35 1 5.6586 1.0778 -0.0065 36 1 6.6147 3.2074 -0.0175 37 1 5.1766 6.6082 -1.4654 38 1 4.5808 4.9991 -1.9289 39 1 6.5672 5.7014 -3.2862 40 1 6.8982 4.2334 -2.3293 41 1 9.2184 5.0746 -2.8379 42 1 9.1548 6.8578 -2.9377 43 1 10.8276 5.2545 -1.2001 44 1 10.6815 7.0383 -1.2210 45 1 9.1267 7.0498 0.5493 46 1 9.8371 5.4450 0.9248 47 1 6.9719 5.2820 1.6027 48 1 6.6815 6.7675 0.6577 49 1 0.8911 -2.5589 -0.4986 50 1 2.5845 -3.1075 -0.4960 51 1 0.7197 -5.9670 0.8856 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000375051966.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:50:25 Heat of formation + Delta-G solvation = 55.046450 kcal Electronic energy + Delta-G solvation = -30584.280283 eV Core-core repulsion = 26520.113248 eV Total energy + Delta-G solvation = -4064.167036 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.01883 -40.44256 -39.28550 -36.24978 -34.67939 -33.49768 -33.16317 -32.00403 -31.21701 -30.65463 -29.34665 -27.52987 -26.54678 -26.27461 -23.55762 -23.21419 -22.21380 -21.65982 -21.28826 -19.89851 -19.78966 -19.24290 -17.81093 -16.67449 -16.52882 -16.20248 -16.06287 -15.57876 -15.52110 -15.06729 -14.75521 -14.51173 -14.38458 -14.14042 -13.98027 -13.57154 -13.34983 -13.00000 -12.89158 -12.77163 -12.46052 -12.26041 -12.17786 -12.14001 -11.74494 -11.63872 -11.54785 -11.46527 -11.37766 -11.09261 -11.01789 -10.88937 -10.81777 -10.70404 -10.41077 -10.23313 -9.97446 -9.63049 -9.51584 -9.20299 -8.66518 -8.63160 -7.88473 -7.37492 -6.24066 -4.31519 2.42134 2.68274 3.13149 3.21901 3.28251 3.33799 3.54339 3.64564 3.86515 4.10459 4.22082 4.27345 4.36491 4.51569 4.60751 4.71408 4.72427 4.86730 4.93645 5.09512 5.13394 5.19224 5.24873 5.36893 5.43029 5.44543 5.46573 5.57425 5.60866 5.62463 5.72049 5.74842 5.80234 5.86299 5.95493 5.98099 6.14283 6.24966 6.37525 6.48969 6.58709 6.64122 6.65388 6.88228 6.97306 7.07625 7.16935 7.55901 7.68833 7.90784 7.98011 8.09866 8.63599 8.70144 8.78072 9.34620 10.83063 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.020999 B = 0.001967 C = 0.001904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.100144 B =14228.394799 C =14700.192421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.090 3.910 3 C -0.289 4.289 4 C 0.283 3.717 5 N -0.645 5.645 6 C 0.713 3.287 7 O -0.565 6.565 8 N -0.742 5.742 9 C 0.166 3.834 10 H 0.094 0.906 11 C -0.125 4.125 12 C 0.062 3.938 13 N -0.536 5.536 14 C 0.049 3.951 15 C -0.129 4.129 16 C -0.115 4.115 17 C 0.064 3.936 18 H 0.052 0.948 19 C -0.113 4.113 20 N -0.325 5.325 21 N -0.319 5.319 22 C 0.259 3.741 23 C -0.534 4.534 24 H 0.064 0.936 25 C 0.065 3.935 26 N -0.892 5.892 27 Si 0.906 3.094 28 H -0.277 1.277 29 H -0.283 1.283 30 H -0.273 1.273 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.160 0.840 35 H 0.404 0.596 36 H 0.392 0.608 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.034 0.966 41 H 0.037 0.963 42 H 0.077 0.923 43 H 0.066 0.934 44 H 0.072 0.928 45 H 0.078 0.922 46 H 0.071 0.929 47 H 0.076 0.924 48 H 0.090 0.910 49 H 0.054 0.946 50 H 0.051 0.949 51 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.908 23.351 -4.260 28.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.041 4.041 3 C -0.320 4.320 4 C 0.029 3.971 5 N -0.295 5.295 6 C 0.412 3.588 7 O -0.440 6.440 8 N -0.399 5.399 9 C 0.061 3.939 10 H 0.112 0.888 11 C -0.164 4.164 12 C -0.066 4.066 13 N -0.261 5.261 14 C -0.079 4.079 15 C -0.167 4.167 16 C -0.153 4.153 17 C -0.044 4.044 18 H 0.069 0.931 19 C -0.151 4.151 20 N -0.156 5.156 21 N -0.101 5.101 22 C 0.141 3.859 23 C -0.573 4.573 24 H 0.082 0.918 25 C -0.138 4.138 26 N -0.530 5.530 27 Si 0.733 3.267 28 H -0.203 1.203 29 H -0.209 1.209 30 H -0.197 1.197 31 H 0.095 0.905 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.178 0.822 35 H 0.239 0.761 36 H 0.226 0.774 37 H 0.098 0.902 38 H 0.095 0.905 39 H 0.092 0.908 40 H 0.052 0.948 41 H 0.056 0.944 42 H 0.095 0.905 43 H 0.085 0.915 44 H 0.091 0.909 45 H 0.096 0.904 46 H 0.090 0.910 47 H 0.094 0.906 48 H 0.108 0.892 49 H 0.072 0.928 50 H 0.069 0.931 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 14.325 22.958 -4.313 27.402 hybrid contribution 0.693 -1.144 0.677 1.499 sum 15.017 21.814 -3.636 26.732 Atomic orbital electron populations 1.20324 0.87952 1.02768 1.03120 1.21058 0.94872 0.87190 1.00997 1.21228 0.89677 0.99798 1.21271 1.18665 0.86583 0.89240 1.02599 1.41427 1.07496 1.03834 1.76731 1.15666 0.84889 0.80334 0.77906 1.90866 1.23493 1.73413 1.56269 1.45316 1.07296 1.06510 1.80780 1.20675 0.99136 0.77569 0.96512 0.88798 1.22012 0.96953 1.02320 0.95153 1.21920 0.90885 0.96068 0.97714 1.62785 1.05667 1.53673 1.04008 1.22497 0.88237 1.00747 0.96431 1.22633 0.97410 1.02309 0.94332 1.22358 0.94623 1.01473 0.96836 1.22563 0.94964 0.96483 0.90370 0.93062 1.21596 0.92792 1.02408 0.98321 1.77248 0.99942 1.08373 1.30019 1.48949 1.00896 1.07716 1.52539 1.19667 0.95924 0.71414 0.98870 1.21326 1.46619 0.97936 0.91399 0.91776 1.24927 0.94734 0.96062 0.98116 1.69915 1.44996 1.06966 1.31148 0.86359 0.78665 0.77859 0.83824 1.20294 1.20900 1.19730 0.90471 0.90846 0.90922 0.82224 0.76134 0.77383 0.90236 0.90533 0.90814 0.94808 0.94428 0.90487 0.91509 0.90944 0.90376 0.91006 0.90556 0.89159 0.92831 0.93083 0.92285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.45 10.11 36.00 0.36 -1.09 16 2 C 0.09 1.93 6.92 -82.28 -0.57 1.36 16 3 C -0.29 -6.06 9.52 -39.84 -0.38 -6.44 16 4 C 0.28 5.85 8.11 -154.36 -1.25 4.59 16 5 N -0.65 -10.18 5.46 -15.50 -0.08 -10.27 16 6 C 0.71 10.48 8.49 -86.91 -0.74 9.74 16 7 O -0.57 -10.18 13.12 5.29 0.07 -10.11 16 8 N -0.74 -7.44 4.62 -59.12 -0.27 -7.72 16 9 C 0.17 1.49 2.73 -68.39 -0.19 1.31 16 10 H 0.09 1.00 7.54 -51.93 -0.39 0.61 16 11 C -0.13 -1.12 5.68 -26.50 -0.15 -1.27 16 12 C 0.06 0.51 5.71 -4.24 -0.02 0.49 16 13 N -0.54 -4.00 4.66 -225.06 -1.05 -5.05 16 14 C 0.05 0.32 6.86 -3.18 -0.02 0.30 16 15 C -0.13 -0.69 6.99 -24.54 -0.17 -0.86 16 16 C -0.11 -0.63 6.63 -25.01 -0.17 -0.80 16 17 C 0.06 0.42 2.46 -66.57 -0.16 0.26 16 18 H 0.05 0.35 6.55 -51.93 -0.34 0.01 16 19 C -0.11 -0.76 5.25 -27.42 -0.14 -0.90 16 20 N -0.33 -7.61 12.59 31.44 0.40 -7.21 16 21 N -0.32 -7.66 3.59 -58.33 -0.21 -7.87 16 22 C 0.26 6.71 5.99 -5.20 -0.03 6.68 16 23 C -0.53 -14.84 9.39 -34.44 -0.32 -15.17 16 24 H 0.06 1.84 7.81 -52.48 -0.41 1.43 16 25 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 26 N -0.89 -25.20 13.29 55.43 0.74 -24.46 16 27 Si 0.91 21.24 29.54 -169.99 -5.02 16.22 16 28 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 29 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 30 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 31 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 32 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.07 1.27 7.07 -51.93 -0.37 0.90 16 34 H 0.16 3.29 5.91 -52.49 -0.31 2.98 16 35 H 0.40 5.16 8.84 -40.82 -0.36 4.80 16 36 H 0.39 3.07 7.01 -40.82 -0.29 2.79 16 37 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.03 0.30 7.86 -51.93 -0.41 -0.11 16 41 H 0.04 0.25 8.04 -51.93 -0.42 -0.16 16 42 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.08 0.43 8.12 -51.93 -0.42 0.01 16 46 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 47 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 49 H 0.05 1.37 7.04 -51.93 -0.37 1.01 16 50 H 0.05 1.41 8.14 -51.93 -0.42 0.98 16 51 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 402.27 15.07 6.06 6.06 Total: -1.00 -32.52 402.27 -11.71 -44.23 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: -8.29 Total: 6.29 kcal Atomic # 6 Polarization: 3.93 SS G_CDS: -4.05 Total: -0.12 kcal Atomic # 7 Polarization: -62.09 SS G_CDS: -0.48 Total: -62.58 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: 0.07 Total: -10.11 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -32.52 -11.71 -44.23 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000375051966.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.281 kcal (2) G-P(sol) polarization free energy of solvation -32.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.234 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds