Wall clock time and date at job start Wed Apr 1 2020 04:50:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.35241 * 126.07248 * 2 1 4 4 C 1.40401 * 107.86876 * 180.16117 * 3 2 1 5 5 N 1.40196 * 125.97444 * 179.82880 * 4 3 2 6 6 C 1.34774 * 119.99707 * 359.70912 * 5 4 3 7 7 O 1.21589 * 120.00242 * 0.02562 * 6 5 4 8 8 N 1.34783 * 119.99548 * 179.97438 * 6 5 4 9 9 C 1.46505 * 119.99731 * 179.97438 * 8 6 5 10 10 H 1.09000 * 109.24265 * 34.46597 * 9 8 6 11 11 C 1.52823 * 109.25053 * 275.00643 * 9 8 6 12 12 C 1.53627 * 110.64516 * 293.61201 * 11 9 8 13 13 N 1.45528 * 107.86736 * 302.86939 * 12 11 9 14 14 C 1.46333 * 117.22186 * 185.54253 * 13 12 11 15 15 C 1.54808 * 105.96377 * 208.06588 * 14 13 12 16 16 C 1.55331 * 104.99018 * 3.64853 * 15 14 13 17 17 C 1.48664 * 109.71004 * 65.31736 * 13 12 11 18 18 H 1.09002 * 111.11114 * 52.54612 * 17 13 12 19 19 C 1.52281 * 108.89728 * 153.92775 * 9 8 6 20 20 N 1.31213 * 108.05543 * 359.55834 * 4 3 2 21 21 N 1.34966 * 126.06658 * 179.67909 * 2 1 3 22 22 C 1.46496 * 125.97931 * 359.97438 * 21 2 1 23 23 C 1.50701 * 109.47251 * 269.99774 * 22 21 2 24 24 H 1.08004 * 119.99545 * 0.02562 * 23 22 21 25 25 C 1.37875 * 119.99777 * 179.97438 * 23 22 21 26 26 N 1.31508 * 120.00510 * 0.02562 * 25 23 22 27 27 Si 1.86804 * 119.99647 * 180.02562 * 25 23 22 28 28 H 1.48502 * 109.47048 * 90.00093 * 27 25 23 29 29 H 1.48499 * 109.47203 * 209.99938 * 27 25 23 30 30 H 1.48496 * 109.47060 * 330.00273 * 27 25 23 31 31 H 1.09004 * 109.47104 * 270.32157 * 1 2 3 32 32 H 1.08997 * 109.47368 * 30.31936 * 1 2 3 33 33 H 1.09002 * 109.47757 * 150.32196 * 1 2 3 34 34 H 1.07999 * 126.06479 * 359.97438 * 3 2 1 35 35 H 0.96994 * 119.99962 * 179.71352 * 5 4 3 36 36 H 0.96994 * 120.00121 * 0.02562 * 8 6 5 37 37 H 1.09003 * 109.23609 * 173.31197 * 11 9 8 38 38 H 1.09000 * 109.21080 * 53.90175 * 11 9 8 39 39 H 1.09006 * 109.77988 * 183.27694 * 12 11 9 40 40 H 1.09003 * 109.82864 * 62.49118 * 12 11 9 41 41 H 1.08998 * 110.15653 * 327.18648 * 14 13 12 42 42 H 1.08997 * 110.15634 * 88.87384 * 14 13 12 43 43 H 1.09004 * 110.33527 * 122.52469 * 15 14 13 44 44 H 1.09000 * 110.33797 * 244.76851 * 15 14 13 45 45 H 1.08998 * 110.90515 * 264.00260 * 16 15 14 46 46 H 1.08993 * 110.90816 * 140.39663 * 16 15 14 47 47 H 1.09004 * 109.96059 * 304.22492 * 19 9 8 48 48 H 1.08997 * 109.02223 * 183.70504 * 19 9 8 49 49 H 1.08999 * 109.47099 * 30.00245 * 22 21 2 50 50 H 1.09003 * 109.46980 * 150.00328 * 22 21 2 51 51 H 0.96999 * 120.00712 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3033 1.0931 0.0000 4 6 3.6370 0.6545 -0.0038 5 7 4.7738 1.4750 -0.0084 6 6 4.6370 2.8158 -0.0154 7 8 3.5277 3.3138 -0.0174 8 7 5.7298 3.6046 -0.0194 9 6 5.5812 5.0621 -0.0276 10 1 4.7004 5.3366 0.5528 11 6 5.4055 5.5425 -1.4677 12 6 6.6875 5.3017 -2.2792 13 7 7.7788 5.9879 -1.6041 14 6 9.0800 5.9968 -2.2735 15 6 10.1376 6.0966 -1.1474 16 6 9.3232 6.0454 0.1743 17 6 8.0194 5.3628 -0.2769 18 1 8.1544 4.2851 -0.3692 19 6 6.8183 5.6876 0.6027 20 7 3.6336 -0.6576 0.0037 21 7 2.3015 -1.0910 0.0061 22 6 1.8499 -2.4846 0.0144 23 6 1.6957 -2.9541 1.4381 24 1 1.9119 -2.2815 2.2550 25 6 1.2774 -4.2420 1.6977 26 7 1.0136 -5.0608 0.7030 27 14 1.0855 -4.8238 3.4624 28 1 -0.2972 -4.5460 3.9276 29 1 1.3477 -6.2838 3.5336 30 1 2.0532 -4.1042 4.3288 31 1 -0.3633 0.0058 1.0277 32 1 -0.3634 0.8871 -0.5188 33 1 -0.3635 -0.8928 -0.5088 34 1 1.9720 2.1210 -0.0004 35 1 5.6586 1.0778 -0.0065 36 1 6.6147 3.2074 -0.0175 37 1 5.1766 6.6082 -1.4654 38 1 4.5808 4.9991 -1.9289 39 1 6.5672 5.7014 -3.2862 40 1 6.8982 4.2334 -2.3293 41 1 9.2184 5.0746 -2.8379 42 1 9.1548 6.8578 -2.9377 43 1 10.8276 5.2545 -1.2001 44 1 10.6815 7.0383 -1.2210 45 1 9.1267 7.0498 0.5493 46 1 9.8371 5.4450 0.9248 47 1 6.9719 5.2820 1.6027 48 1 6.6815 6.7675 0.6577 49 1 0.8911 -2.5589 -0.4986 50 1 2.5845 -3.1075 -0.4960 51 1 0.7197 -5.9670 0.8856 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000375051966.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:50:24 Heat of formation + Delta-G solvation = 34.170822 kcal Electronic energy + Delta-G solvation = -30585.185519 eV Core-core repulsion = 26520.113248 eV Total energy + Delta-G solvation = -4065.072271 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.34513 -41.54672 -40.35108 -37.12042 -36.15743 -35.31583 -34.04312 -33.15121 -32.67407 -32.15855 -29.99110 -28.60929 -27.99905 -27.82843 -25.11835 -24.12482 -23.46655 -22.41320 -21.78029 -21.33882 -21.19797 -20.15794 -19.14074 -18.76930 -17.72822 -17.23209 -16.89606 -16.78195 -16.56720 -16.34122 -15.99040 -15.88884 -15.58195 -15.38237 -14.90042 -14.66214 -14.33534 -14.29731 -14.01458 -13.79285 -13.68713 -13.51452 -13.46554 -13.32671 -13.13705 -12.86595 -12.72128 -12.65798 -12.32634 -12.25076 -12.12726 -12.11713 -11.99624 -11.57727 -11.55830 -11.42385 -11.37369 -11.30636 -11.11033 -10.72996 -10.18517 -9.55876 -9.25877 -9.06944 -8.32185 -6.50009 1.02635 1.13155 1.37882 1.38592 1.50244 1.67941 2.09125 2.35445 2.40326 2.96985 2.98194 3.13807 3.57056 3.65851 3.86575 3.97802 4.02439 4.10602 4.16986 4.17925 4.30446 4.33809 4.44313 4.45809 4.66342 4.69888 4.72561 4.78648 4.79890 4.87626 4.90004 4.93046 4.97040 5.01034 5.03424 5.03921 5.08407 5.13175 5.17861 5.18956 5.25623 5.34414 5.37445 5.54109 5.57969 5.81516 5.85852 5.98336 6.04161 6.27883 6.29042 6.61863 6.74391 7.13133 7.20811 7.44012 8.73437 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.020999 B = 0.001967 C = 0.001904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.100144 B =14228.394799 C =14700.192421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.087 3.913 3 C -0.297 4.297 4 C 0.293 3.707 5 N -0.638 5.638 6 C 0.712 3.288 7 O -0.597 6.597 8 N -0.719 5.719 9 C 0.165 3.835 10 H 0.078 0.922 11 C -0.120 4.120 12 C 0.067 3.933 13 N -0.541 5.541 14 C 0.045 3.955 15 C -0.126 4.126 16 C -0.112 4.112 17 C 0.062 3.938 18 H 0.051 0.949 19 C -0.103 4.103 20 N -0.361 5.361 21 N -0.344 5.344 22 C 0.275 3.725 23 C -0.552 4.552 24 H 0.049 0.951 25 C 0.022 3.978 26 N -0.918 5.918 27 Si 0.972 3.028 28 H -0.264 1.264 29 H -0.274 1.274 30 H -0.276 1.276 31 H 0.083 0.917 32 H 0.105 0.895 33 H 0.068 0.932 34 H 0.166 0.834 35 H 0.419 0.581 36 H 0.406 0.594 37 H 0.087 0.913 38 H 0.052 0.948 39 H 0.074 0.926 40 H 0.026 0.974 41 H 0.033 0.967 42 H 0.078 0.922 43 H 0.071 0.929 44 H 0.080 0.920 45 H 0.079 0.921 46 H 0.082 0.918 47 H 0.086 0.914 48 H 0.097 0.903 49 H 0.052 0.948 50 H 0.024 0.976 51 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.934 24.732 -3.197 29.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.044 4.044 3 C -0.328 4.328 4 C 0.038 3.962 5 N -0.289 5.289 6 C 0.412 3.588 7 O -0.475 6.475 8 N -0.376 5.376 9 C 0.061 3.939 10 H 0.097 0.903 11 C -0.159 4.159 12 C -0.061 4.061 13 N -0.267 5.267 14 C -0.082 4.082 15 C -0.164 4.164 16 C -0.150 4.150 17 C -0.046 4.046 18 H 0.069 0.931 19 C -0.141 4.141 20 N -0.192 5.192 21 N -0.126 5.126 22 C 0.157 3.843 23 C -0.590 4.590 24 H 0.067 0.933 25 C -0.179 4.179 26 N -0.556 5.556 27 Si 0.795 3.205 28 H -0.189 1.189 29 H -0.199 1.199 30 H -0.201 1.201 31 H 0.102 0.898 32 H 0.124 0.876 33 H 0.087 0.913 34 H 0.184 0.816 35 H 0.256 0.744 36 H 0.243 0.757 37 H 0.105 0.895 38 H 0.071 0.929 39 H 0.093 0.907 40 H 0.044 0.956 41 H 0.052 0.948 42 H 0.097 0.903 43 H 0.090 0.910 44 H 0.098 0.902 45 H 0.098 0.902 46 H 0.101 0.899 47 H 0.104 0.896 48 H 0.116 0.884 49 H 0.070 0.930 50 H 0.042 0.958 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 15.410 24.376 -3.262 29.022 hybrid contribution 0.440 -1.433 0.280 1.525 sum 15.850 22.943 -2.982 28.044 Atomic orbital electron populations 1.20460 0.85387 1.04156 1.03931 1.21737 0.96636 0.86469 0.99538 1.21395 0.89933 0.99853 1.21624 1.18946 0.88083 0.88880 1.00305 1.41428 1.06950 1.03948 1.76611 1.15821 0.85450 0.79973 0.77590 1.90836 1.25150 1.73801 1.57709 1.45203 1.06741 1.06656 1.78968 1.20804 0.99934 0.76574 0.96597 0.90337 1.21923 0.96613 1.02381 0.94939 1.21821 0.90889 0.95668 0.97742 1.62795 1.05905 1.53539 1.04414 1.22560 0.88112 1.00638 0.96930 1.22632 0.97097 1.03007 0.93650 1.22360 0.93869 1.01617 0.97108 1.22625 0.95478 0.96600 0.89875 0.93088 1.21544 0.91461 1.02577 0.98546 1.77168 1.00064 1.09782 1.32206 1.48752 1.01667 1.07460 1.54728 1.19236 0.94889 0.72452 0.97767 1.21429 1.47457 0.98360 0.91751 0.93294 1.25736 0.93988 0.95893 1.02284 1.69997 1.45088 1.07410 1.33124 0.85353 0.78970 0.77546 0.78596 1.18924 1.19890 1.20120 0.89823 0.87634 0.91290 0.81634 0.74428 0.75694 0.89473 0.92908 0.90731 0.95615 0.94839 0.90323 0.90983 0.90162 0.90183 0.89922 0.89556 0.88426 0.93018 0.95813 0.91743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.78 10.11 71.23 0.72 -2.06 16 2 C 0.09 3.73 6.92 41.38 0.29 4.02 16 3 C -0.30 -12.49 9.52 22.11 0.21 -12.28 16 4 C 0.29 12.19 8.11 133.31 1.08 13.27 16 5 N -0.64 -19.83 5.46 -321.23 -1.75 -21.58 16 6 C 0.71 20.49 8.49 179.05 1.52 22.01 16 7 O -0.60 -21.40 13.12 -4.00 -0.05 -21.45 16 8 N -0.72 -13.56 4.62 -459.22 -2.12 -15.68 16 9 C 0.17 2.78 2.73 44.69 0.12 2.90 16 10 H 0.08 1.63 7.54 -2.39 -0.02 1.61 16 11 C -0.12 -2.06 5.68 30.75 0.17 -1.89 16 12 C 0.07 1.04 5.71 86.77 0.50 1.53 16 13 N -0.54 -7.16 4.66 -865.95 -4.03 -11.19 16 14 C 0.05 0.51 6.86 87.03 0.60 1.11 16 15 C -0.13 -1.05 6.99 32.01 0.22 -0.83 16 16 C -0.11 -0.93 6.63 31.71 0.21 -0.72 16 17 C 0.06 0.68 2.46 44.68 0.11 0.79 16 18 H 0.05 0.57 6.55 -2.39 -0.02 0.55 16 19 C -0.10 -1.16 5.25 30.15 0.16 -1.01 16 20 N -0.36 -17.28 12.59 -54.43 -0.69 -17.97 16 21 N -0.34 -16.94 3.59 -338.46 -1.22 -18.16 16 22 C 0.28 14.76 5.99 85.63 0.51 15.28 16 23 C -0.55 -31.25 9.39 25.60 0.24 -31.01 16 24 H 0.05 2.87 7.81 -2.91 -0.02 2.84 16 25 C 0.02 1.21 5.46 84.66 0.46 1.67 16 26 N -0.92 -52.13 13.29 21.45 0.28 -51.85 16 27 Si 0.97 43.34 29.54 68.60 2.03 45.36 16 28 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 29 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 30 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 31 H 0.08 2.76 8.14 -2.38 -0.02 2.74 16 32 H 0.11 2.88 8.14 -2.39 -0.02 2.86 16 33 H 0.07 2.40 7.07 -2.39 -0.02 2.38 16 34 H 0.17 6.78 5.91 -2.91 -0.02 6.77 16 35 H 0.42 10.34 8.84 -92.71 -0.82 9.53 16 36 H 0.41 5.62 7.01 -92.71 -0.65 4.97 16 37 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 40 H 0.03 0.44 7.86 -2.39 -0.02 0.42 16 41 H 0.03 0.41 8.04 -2.39 -0.02 0.39 16 42 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.07 0.54 8.14 -2.38 -0.02 0.52 16 44 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 45 H 0.08 0.66 8.12 -2.39 -0.02 0.64 16 46 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 47 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 48 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 49 H 0.05 2.74 7.04 -2.39 -0.02 2.72 16 50 H 0.02 1.38 8.14 -2.39 -0.02 1.36 16 51 H 0.27 14.48 8.31 -92.71 -0.77 13.71 16 Total: -1.00 -70.63 402.27 -0.94 -71.57 By element: Atomic # 1 Polarization: 28.66 SS G_CDS: -0.52 Total: 28.15 kcal Atomic # 6 Polarization: 5.67 SS G_CDS: 7.13 Total: 12.79 kcal Atomic # 7 Polarization: -126.90 SS G_CDS: -9.52 Total: -136.42 kcal Atomic # 8 Polarization: -21.40 SS G_CDS: -0.05 Total: -21.45 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.36 kcal Total: -70.63 -0.94 -71.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000375051966.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.739 kcal (2) G-P(sol) polarization free energy of solvation -70.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.569 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds