Wall clock time and date at job start Wed Apr 1 2020 04:50:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35244 * 126.06891 * 2 1 4 4 C 1.40403 * 107.86792 * 179.75684 * 3 2 1 5 5 N 1.40193 * 125.97569 * 180.22333 * 4 3 2 6 6 C 1.34779 * 119.99651 * 359.97438 * 5 4 3 7 7 O 1.21584 * 120.00443 * 359.97438 * 6 5 4 8 8 N 1.34781 * 119.99590 * 180.02562 * 6 5 4 9 9 C 1.46501 * 119.99605 * 180.02562 * 8 6 5 10 10 H 1.08990 * 109.24602 * 324.99572 * 9 8 6 11 11 C 1.52815 * 109.24657 * 84.45725 * 9 8 6 12 12 C 1.53621 * 110.70543 * 66.54709 * 11 9 8 13 13 N 1.45670 * 107.79736 * 57.36690 * 12 11 9 14 14 C 1.47096 * 116.53923 * 177.30660 * 13 12 11 15 15 C 1.55195 * 103.52071 * 162.43045 * 14 13 12 16 16 C 1.54986 * 104.93537 * 336.00382 * 15 14 13 17 17 C 1.48720 * 109.34986 * 294.44102 * 13 12 11 18 18 H 1.08997 * 110.34452 * 308.89831 * 17 13 12 19 19 C 1.52181 * 107.47689 * 69.80618 * 17 13 12 20 20 N 1.31216 * 108.05251 * 0.24078 * 4 3 2 21 21 N 1.34961 * 126.07182 * 180.17442 * 2 1 3 22 22 C 1.46502 * 125.97641 * 359.97438 * 21 2 1 23 23 C 1.50697 * 109.47635 * 270.28652 * 22 21 2 24 24 H 1.08002 * 119.99714 * 0.02562 * 23 22 21 25 25 C 1.37872 * 120.00363 * 179.97438 * 23 22 21 26 26 N 1.31509 * 120.00433 * 179.97438 * 25 23 22 27 27 Si 1.86802 * 119.99843 * 0.02562 * 25 23 22 28 28 H 1.48505 * 109.47074 * 90.00015 * 27 25 23 29 29 H 1.48499 * 109.47145 * 209.99704 * 27 25 23 30 30 H 1.48498 * 109.47373 * 330.00326 * 27 25 23 31 31 H 1.08998 * 109.47332 * 90.02585 * 1 2 3 32 32 H 1.09000 * 109.47129 * 210.02203 * 1 2 3 33 33 H 1.09001 * 109.47359 * 330.02562 * 1 2 3 34 34 H 1.08002 * 126.07038 * 0.02562 * 3 2 1 35 35 H 0.97001 * 120.00000 * 180.02562 * 5 4 3 36 36 H 0.97001 * 120.00061 * 0.02562 * 8 6 5 37 37 H 1.09001 * 109.22918 * 186.86440 * 11 9 8 38 38 H 1.09002 * 109.23292 * 306.26889 * 11 9 8 39 39 H 1.08995 * 109.79797 * 176.94723 * 12 11 9 40 40 H 1.09009 * 109.79132 * 297.79849 * 12 11 9 41 41 H 1.09001 * 110.60784 * 280.93478 * 14 13 12 42 42 H 1.08991 * 110.61250 * 43.76234 * 14 13 12 43 43 H 1.09006 * 110.34758 * 94.86991 * 15 14 13 44 44 H 1.09006 * 110.34427 * 217.13693 * 15 14 13 45 45 H 1.08999 * 110.48782 * 116.18994 * 16 15 14 46 46 H 1.08997 * 110.48822 * 238.83495 * 16 15 14 47 47 H 1.08995 * 109.78178 * 177.56133 * 19 17 13 48 48 H 1.08996 * 109.84320 * 56.62147 * 19 17 13 49 49 H 1.09001 * 109.47003 * 30.28973 * 22 21 2 50 50 H 1.09004 * 109.46672 * 150.28303 * 22 21 2 51 51 H 0.97000 * 120.00675 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0932 0.0000 4 6 3.6370 0.6546 0.0057 5 7 4.7737 1.4752 0.0119 6 6 4.6369 2.8160 0.0124 7 8 3.5277 3.3140 0.0069 8 7 5.7297 3.6049 0.0179 9 6 5.5809 5.0623 0.0190 10 1 4.7085 5.3348 -0.5747 11 6 5.3851 5.5476 1.4547 12 6 6.6562 5.3140 2.2852 13 7 7.7538 6.0065 1.6236 14 6 9.0612 5.9592 2.2961 15 6 10.0600 6.3543 1.1758 16 6 9.3365 5.9988 -0.1479 17 6 8.0132 5.3715 0.3041 18 1 8.1251 4.2933 0.4178 19 6 6.8343 5.6998 -0.6006 20 7 3.6336 -0.6575 0.0037 21 7 2.3016 -1.0909 -0.0033 22 6 1.8501 -2.4845 -0.0070 23 6 1.6890 -2.9643 1.4124 24 1 1.9013 -2.2976 2.2351 25 6 1.2696 -4.2540 1.6609 26 7 1.1294 -4.6728 2.8996 27 14 0.9017 -5.4069 0.2379 28 1 2.1360 -6.1444 -0.1334 29 1 -0.1497 -6.3741 0.6435 30 1 0.4264 -4.6189 -0.9276 31 1 -0.3634 -0.0005 -1.0276 32 1 -0.3633 -0.8898 0.5142 33 1 -0.3634 0.8902 0.5134 34 1 1.9720 2.1212 0.0004 35 1 5.6586 1.0779 0.0152 36 1 6.6146 3.2076 0.0212 37 1 5.1532 6.6126 1.4452 38 1 4.5561 5.0039 1.9076 39 1 6.5195 5.7138 3.2899 40 1 6.8716 4.2467 2.3380 41 1 9.0981 6.6786 3.1142 42 1 9.2687 4.9535 2.6613 43 1 10.2722 7.4227 1.2167 44 1 10.9817 5.7800 1.2701 45 1 9.1515 6.8983 -0.7350 46 1 9.9224 5.2811 -0.7221 47 1 7.0062 5.2873 -1.5948 48 1 6.7066 6.7803 -0.6646 49 1 0.8937 -2.5552 -0.5252 50 1 2.5870 -3.1038 -0.5185 51 1 0.8340 -5.5800 3.0744 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000375051967.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:50:31 Heat of formation + Delta-G solvation = 60.620514 kcal Electronic energy + Delta-G solvation = -30634.156062 eV Core-core repulsion = 26570.230736 eV Total energy + Delta-G solvation = -4063.925326 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.04388 -40.49999 -39.33058 -36.21900 -34.73545 -33.48666 -33.13255 -32.02617 -31.27725 -30.97284 -29.36299 -27.54727 -26.92247 -26.35783 -23.51938 -23.02301 -22.11516 -21.70618 -21.19935 -19.99313 -19.81333 -19.24678 -17.86239 -17.10623 -16.55827 -16.20801 -15.95420 -15.66915 -15.46788 -15.19276 -14.80830 -14.51061 -14.45506 -14.26955 -13.81173 -13.54247 -13.27051 -13.16035 -12.90956 -12.78564 -12.60292 -12.38288 -12.27973 -12.15272 -11.89526 -11.76248 -11.58444 -11.55081 -11.40581 -11.19898 -10.93640 -10.90818 -10.79396 -10.70440 -10.55506 -10.04509 -9.93937 -9.70704 -9.56575 -9.23161 -8.78243 -8.75826 -7.95864 -7.41848 -6.26015 -4.29086 2.36604 2.60009 3.07751 3.15622 3.21719 3.23226 3.51387 3.60557 3.80863 4.10238 4.21449 4.22140 4.26563 4.53269 4.60710 4.69778 4.76248 4.88687 4.91526 5.02323 5.13451 5.20092 5.22496 5.34542 5.38952 5.45558 5.48648 5.55348 5.60746 5.62630 5.64770 5.73698 5.77546 5.85926 5.90249 5.98606 6.05485 6.19032 6.34897 6.40975 6.49515 6.50556 6.54246 6.63163 6.80947 6.83575 7.06426 7.29596 7.48545 7.88576 7.92128 8.32266 8.59782 8.62353 8.79880 9.29265 10.86470 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.020878 B = 0.002004 C = 0.001943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.784066 B =13966.397620 C =14410.270515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.095 3.905 3 C -0.285 4.285 4 C 0.287 3.713 5 N -0.645 5.645 6 C 0.713 3.287 7 O -0.565 6.565 8 N -0.741 5.741 9 C 0.165 3.835 10 H 0.093 0.907 11 C -0.126 4.126 12 C 0.056 3.944 13 N -0.523 5.523 14 C 0.040 3.960 15 C -0.122 4.122 16 C -0.117 4.117 17 C 0.059 3.941 18 H 0.049 0.951 19 C -0.111 4.111 20 N -0.323 5.323 21 N -0.319 5.319 22 C 0.232 3.768 23 C -0.540 4.540 24 H 0.081 0.919 25 C 0.078 3.922 26 N -0.887 5.887 27 Si 0.874 3.126 28 H -0.271 1.271 29 H -0.280 1.280 30 H -0.264 1.264 31 H 0.070 0.930 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.162 0.838 35 H 0.405 0.595 36 H 0.392 0.608 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.075 0.925 40 H 0.035 0.965 41 H 0.079 0.921 42 H 0.040 0.960 43 H 0.072 0.928 44 H 0.067 0.933 45 H 0.075 0.925 46 H 0.068 0.932 47 H 0.075 0.925 48 H 0.091 0.909 49 H 0.050 0.950 50 H 0.045 0.955 51 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.698 22.791 -6.671 27.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.036 4.036 3 C -0.316 4.316 4 C 0.033 3.967 5 N -0.295 5.295 6 C 0.413 3.587 7 O -0.440 6.440 8 N -0.398 5.398 9 C 0.060 3.940 10 H 0.111 0.889 11 C -0.165 4.165 12 C -0.072 4.072 13 N -0.248 5.248 14 C -0.088 4.088 15 C -0.160 4.160 16 C -0.155 4.155 17 C -0.049 4.049 18 H 0.067 0.933 19 C -0.149 4.149 20 N -0.153 5.153 21 N -0.101 5.101 22 C 0.113 3.887 23 C -0.579 4.579 24 H 0.099 0.901 25 C -0.126 4.126 26 N -0.524 5.524 27 Si 0.700 3.300 28 H -0.197 1.197 29 H -0.206 1.206 30 H -0.188 1.188 31 H 0.089 0.911 32 H 0.101 0.899 33 H 0.096 0.904 34 H 0.180 0.820 35 H 0.239 0.761 36 H 0.226 0.774 37 H 0.098 0.902 38 H 0.095 0.905 39 H 0.094 0.906 40 H 0.053 0.947 41 H 0.098 0.902 42 H 0.058 0.942 43 H 0.091 0.909 44 H 0.085 0.915 45 H 0.093 0.907 46 H 0.087 0.913 47 H 0.093 0.907 48 H 0.110 0.890 49 H 0.068 0.932 50 H 0.063 0.937 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 14.108 22.457 -6.559 27.320 hybrid contribution 0.617 -1.465 -0.212 1.603 sum 14.725 20.992 -6.771 26.521 Atomic orbital electron populations 1.20397 0.87887 1.04149 1.02416 1.21049 0.94893 0.86950 1.00731 1.21260 0.89652 0.99868 1.20843 1.18655 0.86659 0.89173 1.02199 1.41429 1.07483 1.03845 1.76737 1.15648 0.84884 0.80298 0.77890 1.90866 1.23491 1.73398 1.56219 1.45278 1.07309 1.06505 1.80718 1.20909 0.98967 0.77501 0.96596 0.88855 1.22005 0.97104 1.02349 0.95028 1.22007 0.91041 0.96222 0.97977 1.63938 1.04828 1.52302 1.03707 1.22843 0.88751 1.00057 0.97121 1.22533 0.97571 1.01894 0.93997 1.22164 0.94897 1.01090 0.97348 1.22427 0.94947 0.96556 0.91009 0.93292 1.21811 0.92746 1.02278 0.98090 1.77246 0.99465 1.08491 1.30103 1.48482 1.01165 1.06943 1.53494 1.19982 0.95268 0.73822 0.99631 1.21191 1.47249 0.98970 0.90463 0.90123 1.24815 0.94507 0.97460 0.95803 1.69872 1.45680 1.18066 1.18750 0.86888 0.78948 0.81448 0.82714 1.19670 1.20558 1.18846 0.91130 0.89880 0.90378 0.82024 0.76055 0.77357 0.90210 0.90468 0.90644 0.94661 0.90213 0.94199 0.90948 0.91451 0.90671 0.91282 0.90654 0.89044 0.93232 0.93714 0.92137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.53 9.89 36.00 0.36 -1.17 16 2 C 0.09 1.98 6.92 -82.28 -0.57 1.41 16 3 C -0.29 -5.88 9.52 -39.83 -0.38 -6.26 16 4 C 0.29 5.83 8.11 -154.36 -1.25 4.58 16 5 N -0.65 -10.00 5.46 -15.50 -0.08 -10.09 16 6 C 0.71 10.34 8.48 -86.91 -0.74 9.60 16 7 O -0.56 -10.04 13.12 5.29 0.07 -9.97 16 8 N -0.74 -7.33 4.64 -58.43 -0.27 -7.60 16 9 C 0.17 1.47 2.74 -67.68 -0.19 1.29 16 10 H 0.09 0.97 7.56 -51.93 -0.39 0.58 16 11 C -0.13 -1.16 5.66 -26.50 -0.15 -1.31 16 12 C 0.06 0.48 5.74 -4.17 -0.02 0.45 16 13 N -0.52 -3.99 4.84 -224.54 -1.09 -5.08 16 14 C 0.04 0.27 6.71 -2.55 -0.02 0.25 16 15 C -0.12 -0.66 7.05 -24.52 -0.17 -0.84 16 16 C -0.12 -0.64 6.65 -25.55 -0.17 -0.81 16 17 C 0.06 0.39 2.37 -66.99 -0.16 0.23 16 18 H 0.05 0.33 6.42 -51.93 -0.33 0.00 16 19 C -0.11 -0.73 5.29 -26.80 -0.14 -0.87 16 20 N -0.32 -7.39 12.59 31.44 0.40 -6.99 16 21 N -0.32 -7.45 3.59 -58.33 -0.21 -7.66 16 22 C 0.23 5.62 4.87 -5.19 -0.03 5.59 16 23 C -0.54 -15.19 9.94 -34.44 -0.34 -15.53 16 24 H 0.08 2.57 8.06 -52.49 -0.42 2.15 16 25 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 26 N -0.89 -26.39 13.96 55.43 0.77 -25.62 16 27 Si 0.87 20.20 27.47 -169.99 -4.67 15.53 16 28 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 29 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 30 H -0.26 -5.70 6.54 56.52 0.37 -5.33 16 31 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.08 1.50 7.73 -51.93 -0.40 1.10 16 33 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 34 H 0.16 3.27 5.91 -52.49 -0.31 2.96 16 35 H 0.41 5.05 8.84 -40.82 -0.36 4.69 16 36 H 0.39 3.02 7.00 -40.82 -0.29 2.73 16 37 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 39 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.04 0.33 7.80 -51.92 -0.40 -0.08 16 41 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 43 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 44 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.07 0.40 8.00 -51.93 -0.42 -0.02 16 46 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 47 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 48 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 49 H 0.05 1.12 6.72 -51.93 -0.35 0.77 16 50 H 0.04 1.08 7.57 -51.93 -0.39 0.68 16 51 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 399.42 15.07 6.02 6.02 Total: -1.00 -33.67 399.42 -11.44 -45.11 By element: Atomic # 1 Polarization: 15.95 SS G_CDS: -8.31 Total: 7.64 kcal Atomic # 6 Polarization: 2.78 SS G_CDS: -4.07 Total: -1.29 kcal Atomic # 7 Polarization: -62.55 SS G_CDS: -0.48 Total: -63.04 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: 0.07 Total: -9.97 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -4.67 Total: 15.53 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -33.67 -11.44 -45.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000375051967.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.728 kcal (2) G-P(sol) polarization free energy of solvation -33.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds