Wall clock time and date at job start Wed Apr 1 2020 04:50:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35244 * 126.06891 * 2 1 4 4 C 1.40403 * 107.86792 * 179.75684 * 3 2 1 5 5 N 1.40193 * 125.97569 * 180.22333 * 4 3 2 6 6 C 1.34779 * 119.99651 * 359.97438 * 5 4 3 7 7 O 1.21584 * 120.00443 * 359.97438 * 6 5 4 8 8 N 1.34781 * 119.99590 * 180.02562 * 6 5 4 9 9 C 1.46501 * 119.99605 * 180.02562 * 8 6 5 10 10 H 1.08990 * 109.24602 * 324.99572 * 9 8 6 11 11 C 1.52815 * 109.24657 * 84.45725 * 9 8 6 12 12 C 1.53621 * 110.70543 * 66.54709 * 11 9 8 13 13 N 1.45670 * 107.79736 * 57.36690 * 12 11 9 14 14 C 1.47096 * 116.53923 * 177.30660 * 13 12 11 15 15 C 1.55195 * 103.52071 * 162.43045 * 14 13 12 16 16 C 1.54986 * 104.93537 * 336.00382 * 15 14 13 17 17 C 1.48720 * 109.34986 * 294.44102 * 13 12 11 18 18 H 1.08997 * 110.34452 * 308.89831 * 17 13 12 19 19 C 1.52181 * 107.47689 * 69.80618 * 17 13 12 20 20 N 1.31216 * 108.05251 * 0.24078 * 4 3 2 21 21 N 1.34961 * 126.07182 * 180.17442 * 2 1 3 22 22 C 1.46502 * 125.97641 * 359.97438 * 21 2 1 23 23 C 1.50697 * 109.47635 * 270.28652 * 22 21 2 24 24 H 1.08002 * 119.99714 * 0.02562 * 23 22 21 25 25 C 1.37872 * 120.00363 * 179.97438 * 23 22 21 26 26 N 1.31509 * 120.00433 * 179.97438 * 25 23 22 27 27 Si 1.86802 * 119.99843 * 0.02562 * 25 23 22 28 28 H 1.48505 * 109.47074 * 90.00015 * 27 25 23 29 29 H 1.48499 * 109.47145 * 209.99704 * 27 25 23 30 30 H 1.48498 * 109.47373 * 330.00326 * 27 25 23 31 31 H 1.08998 * 109.47332 * 90.02585 * 1 2 3 32 32 H 1.09000 * 109.47129 * 210.02203 * 1 2 3 33 33 H 1.09001 * 109.47359 * 330.02562 * 1 2 3 34 34 H 1.08002 * 126.07038 * 0.02562 * 3 2 1 35 35 H 0.97001 * 120.00000 * 180.02562 * 5 4 3 36 36 H 0.97001 * 120.00061 * 0.02562 * 8 6 5 37 37 H 1.09001 * 109.22918 * 186.86440 * 11 9 8 38 38 H 1.09002 * 109.23292 * 306.26889 * 11 9 8 39 39 H 1.08995 * 109.79797 * 176.94723 * 12 11 9 40 40 H 1.09009 * 109.79132 * 297.79849 * 12 11 9 41 41 H 1.09001 * 110.60784 * 280.93478 * 14 13 12 42 42 H 1.08991 * 110.61250 * 43.76234 * 14 13 12 43 43 H 1.09006 * 110.34758 * 94.86991 * 15 14 13 44 44 H 1.09006 * 110.34427 * 217.13693 * 15 14 13 45 45 H 1.08999 * 110.48782 * 116.18994 * 16 15 14 46 46 H 1.08997 * 110.48822 * 238.83495 * 16 15 14 47 47 H 1.08995 * 109.78178 * 177.56133 * 19 17 13 48 48 H 1.08996 * 109.84320 * 56.62147 * 19 17 13 49 49 H 1.09001 * 109.47003 * 30.28973 * 22 21 2 50 50 H 1.09004 * 109.46672 * 150.28303 * 22 21 2 51 51 H 0.97000 * 120.00675 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0932 0.0000 4 6 3.6370 0.6546 0.0057 5 7 4.7737 1.4752 0.0119 6 6 4.6369 2.8160 0.0124 7 8 3.5277 3.3140 0.0069 8 7 5.7297 3.6049 0.0179 9 6 5.5809 5.0623 0.0190 10 1 4.7085 5.3348 -0.5747 11 6 5.3851 5.5476 1.4547 12 6 6.6562 5.3140 2.2852 13 7 7.7538 6.0065 1.6236 14 6 9.0612 5.9592 2.2961 15 6 10.0600 6.3543 1.1758 16 6 9.3365 5.9988 -0.1479 17 6 8.0132 5.3715 0.3041 18 1 8.1251 4.2933 0.4178 19 6 6.8343 5.6998 -0.6006 20 7 3.6336 -0.6575 0.0037 21 7 2.3016 -1.0909 -0.0033 22 6 1.8501 -2.4845 -0.0070 23 6 1.6890 -2.9643 1.4124 24 1 1.9013 -2.2976 2.2351 25 6 1.2696 -4.2540 1.6609 26 7 1.1294 -4.6728 2.8996 27 14 0.9017 -5.4069 0.2379 28 1 2.1360 -6.1444 -0.1334 29 1 -0.1497 -6.3741 0.6435 30 1 0.4264 -4.6189 -0.9276 31 1 -0.3634 -0.0005 -1.0276 32 1 -0.3633 -0.8898 0.5142 33 1 -0.3634 0.8902 0.5134 34 1 1.9720 2.1212 0.0004 35 1 5.6586 1.0779 0.0152 36 1 6.6146 3.2076 0.0212 37 1 5.1532 6.6126 1.4452 38 1 4.5561 5.0039 1.9076 39 1 6.5195 5.7138 3.2899 40 1 6.8716 4.2467 2.3380 41 1 9.0981 6.6786 3.1142 42 1 9.2687 4.9535 2.6613 43 1 10.2722 7.4227 1.2167 44 1 10.9817 5.7800 1.2701 45 1 9.1515 6.8983 -0.7350 46 1 9.9224 5.2811 -0.7221 47 1 7.0062 5.2873 -1.5948 48 1 6.7066 6.7803 -0.6646 49 1 0.8937 -2.5552 -0.5252 50 1 2.5870 -3.1038 -0.5185 51 1 0.8340 -5.5800 3.0744 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000375051967.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:50:29 Heat of formation + Delta-G solvation = 37.321094 kcal Electronic energy + Delta-G solvation = -30635.166401 eV Core-core repulsion = 26570.230736 eV Total energy + Delta-G solvation = -4064.935665 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.37495 -41.55665 -40.37632 -37.09713 -36.16657 -35.26057 -34.07796 -33.26337 -32.78820 -32.27963 -30.02184 -28.96541 -27.98566 -27.84720 -24.79241 -24.09514 -23.42321 -22.48469 -21.71246 -21.38485 -21.20260 -20.17495 -19.23099 -19.14095 -17.75618 -17.25802 -16.89030 -16.79391 -16.53174 -16.22125 -16.13873 -15.76045 -15.63187 -15.36391 -14.99466 -14.82691 -14.53818 -14.25852 -13.93536 -13.85302 -13.69160 -13.63259 -13.51623 -13.37131 -13.25917 -12.86186 -12.71417 -12.57581 -12.35709 -12.26877 -12.17014 -11.94935 -11.82870 -11.59378 -11.58296 -11.44593 -11.38669 -11.29018 -11.13481 -10.90118 -10.20110 -9.57835 -9.37576 -9.04660 -8.40490 -6.51701 0.97864 1.10131 1.35774 1.37466 1.47424 1.65549 2.05908 2.26591 2.38187 2.91846 2.99039 3.12071 3.55217 3.64144 3.82834 3.97268 4.02170 4.07847 4.10342 4.18746 4.32081 4.32429 4.43235 4.44610 4.55296 4.65640 4.68055 4.74438 4.77893 4.79522 4.82299 4.85541 4.94858 4.96133 5.02384 5.03429 5.10102 5.11747 5.14665 5.16766 5.22886 5.24278 5.33336 5.36316 5.56556 5.82501 5.89449 5.98671 6.01726 6.21565 6.37870 6.52013 6.70124 7.09128 7.12371 7.42239 8.76157 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.020878 B = 0.002004 C = 0.001943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.784066 B =13966.397620 C =14410.270515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.090 3.910 3 C -0.297 4.297 4 C 0.295 3.705 5 N -0.638 5.638 6 C 0.712 3.288 7 O -0.597 6.597 8 N -0.718 5.718 9 C 0.164 3.836 10 H 0.080 0.920 11 C -0.121 4.121 12 C 0.061 3.939 13 N -0.528 5.528 14 C 0.036 3.964 15 C -0.119 4.119 16 C -0.114 4.114 17 C 0.057 3.943 18 H 0.048 0.952 19 C -0.100 4.100 20 N -0.359 5.359 21 N -0.344 5.344 22 C 0.242 3.758 23 C -0.550 4.550 24 H 0.022 0.978 25 C 0.020 3.980 26 N -0.938 5.938 27 Si 0.952 3.048 28 H -0.266 1.266 29 H -0.274 1.274 30 H -0.233 1.233 31 H 0.101 0.899 32 H 0.068 0.932 33 H 0.097 0.903 34 H 0.166 0.834 35 H 0.419 0.581 36 H 0.406 0.594 37 H 0.087 0.913 38 H 0.050 0.950 39 H 0.074 0.926 40 H 0.025 0.975 41 H 0.080 0.920 42 H 0.035 0.965 43 H 0.076 0.924 44 H 0.076 0.924 45 H 0.080 0.920 46 H 0.079 0.921 47 H 0.088 0.912 48 H 0.099 0.901 49 H 0.074 0.926 50 H 0.048 0.952 51 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.557 23.600 -9.160 29.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.040 4.040 3 C -0.328 4.328 4 C 0.039 3.961 5 N -0.290 5.290 6 C 0.412 3.588 7 O -0.475 6.475 8 N -0.375 5.375 9 C 0.060 3.940 10 H 0.098 0.902 11 C -0.160 4.160 12 C -0.068 4.068 13 N -0.253 5.253 14 C -0.092 4.092 15 C -0.157 4.157 16 C -0.152 4.152 17 C -0.052 4.052 18 H 0.066 0.934 19 C -0.138 4.138 20 N -0.189 5.189 21 N -0.126 5.126 22 C 0.122 3.878 23 C -0.588 4.588 24 H 0.041 0.959 25 C -0.179 4.179 26 N -0.576 5.576 27 Si 0.773 3.227 28 H -0.191 1.191 29 H -0.199 1.199 30 H -0.156 1.156 31 H 0.120 0.880 32 H 0.087 0.913 33 H 0.116 0.884 34 H 0.183 0.817 35 H 0.256 0.744 36 H 0.243 0.757 37 H 0.106 0.894 38 H 0.068 0.932 39 H 0.092 0.908 40 H 0.044 0.956 41 H 0.099 0.901 42 H 0.054 0.946 43 H 0.094 0.906 44 H 0.094 0.906 45 H 0.098 0.902 46 H 0.098 0.902 47 H 0.107 0.893 48 H 0.117 0.883 49 H 0.092 0.908 50 H 0.066 0.934 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 15.034 23.320 -9.053 29.185 hybrid contribution 0.428 -1.532 0.691 1.734 sum 15.462 21.788 -8.362 27.994 Atomic orbital electron populations 1.20535 0.85216 1.04373 1.04460 1.21746 0.96709 0.86354 0.99182 1.21423 0.89988 0.99965 1.21424 1.18949 0.88101 0.88902 1.00110 1.41432 1.06993 1.03946 1.76589 1.15810 0.85427 0.79983 0.77590 1.90837 1.25148 1.73803 1.57671 1.45159 1.06771 1.06642 1.78936 1.21035 0.99991 0.76561 0.96416 0.90187 1.21919 0.96563 1.02397 0.95086 1.21901 0.91222 0.95725 0.97944 1.63952 1.04982 1.52136 1.04209 1.22911 0.88608 0.99913 0.97721 1.22533 0.97485 1.02299 0.93363 1.22172 0.94103 1.01495 0.97432 1.22502 0.95626 0.96599 0.90431 0.93393 1.21761 0.91157 1.02476 0.98413 1.77158 0.99812 1.09762 1.32187 1.48411 1.01762 1.07013 1.55412 1.19779 0.96407 0.74661 0.96963 1.21255 1.47669 0.98686 0.91202 0.95932 1.25851 0.93742 0.99233 0.99121 1.70034 1.46902 1.18948 1.21722 0.85663 0.79024 0.78758 0.79262 1.19054 1.19939 1.15615 0.88034 0.91337 0.88395 0.81651 0.74373 0.75677 0.89420 0.93162 0.90790 0.95635 0.90141 0.94644 0.90560 0.90572 0.90163 0.90191 0.89330 0.88275 0.90807 0.93362 0.91744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.86 9.89 71.23 0.70 -2.16 16 2 C 0.09 3.76 6.92 41.39 0.29 4.05 16 3 C -0.30 -12.29 9.52 22.11 0.21 -12.08 16 4 C 0.29 12.06 8.11 133.31 1.08 13.14 16 5 N -0.64 -19.61 5.46 -321.23 -1.75 -21.36 16 6 C 0.71 20.39 8.48 179.05 1.52 21.90 16 7 O -0.60 -21.31 13.12 -3.98 -0.05 -21.37 16 8 N -0.72 -13.50 4.64 -457.04 -2.12 -15.62 16 9 C 0.16 2.77 2.74 45.15 0.12 2.89 16 10 H 0.08 1.62 7.56 -2.39 -0.02 1.61 16 11 C -0.12 -2.19 5.66 30.74 0.17 -2.01 16 12 C 0.06 1.00 5.74 86.74 0.50 1.50 16 13 N -0.53 -7.30 4.84 -864.30 -4.18 -11.48 16 14 C 0.04 0.43 6.71 87.02 0.58 1.02 16 15 C -0.12 -1.03 7.05 32.03 0.23 -0.80 16 16 C -0.11 -0.94 6.65 31.36 0.21 -0.73 16 17 C 0.06 0.62 2.37 44.38 0.11 0.73 16 18 H 0.05 0.55 6.42 -2.39 -0.02 0.53 16 19 C -0.10 -1.09 5.29 30.55 0.16 -0.93 16 20 N -0.36 -16.65 12.59 -54.43 -0.69 -17.34 16 21 N -0.34 -16.19 3.59 -338.45 -1.22 -17.41 16 22 C 0.24 11.62 4.87 85.63 0.42 12.04 16 23 C -0.55 -31.84 9.94 25.60 0.25 -31.58 16 24 H 0.02 1.52 8.06 -2.91 -0.02 1.49 16 25 C 0.02 1.14 5.47 84.65 0.46 1.60 16 26 N -0.94 -57.41 13.96 21.44 0.30 -57.11 16 27 Si 0.95 41.00 27.47 68.60 1.88 42.89 16 28 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 29 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 30 H -0.23 -8.85 6.54 99.48 0.65 -8.20 16 31 H 0.10 2.68 8.14 -2.39 -0.02 2.66 16 32 H 0.07 2.44 7.73 -2.39 -0.02 2.42 16 33 H 0.10 2.77 8.14 -2.39 -0.02 2.75 16 34 H 0.17 6.71 5.91 -2.91 -0.02 6.70 16 35 H 0.42 10.19 8.84 -92.71 -0.82 9.37 16 36 H 0.41 5.58 7.00 -92.71 -0.65 4.93 16 37 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.03 0.47 7.80 -2.38 -0.02 0.45 16 41 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.04 0.46 8.14 -2.39 -0.02 0.44 16 43 H 0.08 0.62 8.14 -2.38 -0.02 0.60 16 44 H 0.08 0.54 8.14 -2.38 -0.02 0.52 16 45 H 0.08 0.61 8.00 -2.39 -0.02 0.59 16 46 H 0.08 0.51 8.14 -2.39 -0.02 0.50 16 47 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 48 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 49 H 0.07 3.17 6.72 -2.39 -0.02 3.15 16 50 H 0.05 2.27 7.57 -2.38 -0.02 2.25 16 51 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 Total: -1.00 -76.22 399.42 -1.38 -77.60 By element: Atomic # 1 Polarization: 33.19 SS G_CDS: -0.57 Total: 32.62 kcal Atomic # 6 Polarization: 1.56 SS G_CDS: 7.02 Total: 8.57 kcal Atomic # 7 Polarization: -130.66 SS G_CDS: -9.66 Total: -140.31 kcal Atomic # 8 Polarization: -21.31 SS G_CDS: -0.05 Total: -21.37 kcal Atomic # 14 Polarization: 41.00 SS G_CDS: 1.88 Total: 42.89 kcal Total: -76.22 -1.38 -77.60 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000375051967.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.920 kcal (2) G-P(sol) polarization free energy of solvation -76.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.599 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds