Wall clock time and date at job start Wed Apr 1 2020 05:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.33474 * 125.49661 * 2 1 4 4 C 1.30331 * 109.73123 * 179.97438 * 3 2 1 5 5 N 1.34685 * 108.03698 * 0.07845 * 4 3 2 6 6 N 1.30974 * 125.50307 * 179.97438 * 2 1 3 7 7 C 1.46297 * 125.04174 * 179.85643 * 5 4 3 8 8 C 1.53303 * 108.77494 * 342.97175 * 7 5 4 9 9 H 1.09006 * 109.46706 * 290.15071 * 8 7 5 10 10 N 1.46495 * 109.46882 * 170.14862 * 8 7 5 11 11 C 1.34780 * 119.99843 * 85.00250 * 10 8 7 12 12 O 1.21582 * 119.99960 * 4.97781 * 11 10 8 13 13 N 1.34778 * 119.99745 * 184.98546 * 11 10 8 14 14 C 1.46932 * 120.62544 * 174.76233 * 13 11 10 15 15 C 1.53192 * 108.76730 * 126.37229 * 14 13 11 16 16 C 1.53035 * 109.31821 * 54.63392 * 15 14 13 17 17 C 1.53001 * 109.46286 * 178.61117 * 16 15 14 18 18 C 1.50700 * 109.46994 * 185.00389 * 17 16 15 19 19 H 1.07998 * 120.00084 * 359.97438 * 18 17 16 20 20 C 1.37880 * 119.99782 * 180.02562 * 18 17 16 21 21 N 1.31516 * 120.00077 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99946 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47096 * 59.99854 * 22 20 18 24 24 H 1.48500 * 109.47081 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47193 * 299.99718 * 22 20 18 26 26 C 1.53041 * 109.53742 * 298.63472 * 16 15 14 27 27 C 1.46918 * 120.63218 * 354.74599 * 13 11 10 28 28 C 1.53164 * 109.48155 * 50.14434 * 8 7 5 29 29 C 1.50920 * 127.90892 * 180.02562 * 4 3 2 30 30 H 1.08994 * 109.47120 * 89.97847 * 1 2 3 31 31 H 1.09008 * 109.46812 * 209.97999 * 1 2 3 32 32 H 1.09003 * 109.47435 * 329.97458 * 1 2 3 33 33 H 1.09001 * 109.58088 * 223.19346 * 7 5 4 34 34 H 1.08997 * 109.59175 * 102.76504 * 7 5 4 35 35 H 0.96994 * 120.00328 * 264.99214 * 10 8 7 36 36 H 1.08997 * 109.58683 * 6.58666 * 14 13 11 37 37 H 1.08995 * 109.58455 * 246.15410 * 14 13 11 38 38 H 1.09007 * 109.49687 * 174.58549 * 15 14 13 39 39 H 1.09000 * 109.50042 * 294.67820 * 15 14 13 40 40 H 1.09005 * 109.45787 * 58.65540 * 16 15 14 41 41 H 1.08997 * 109.46993 * 304.99860 * 17 16 15 42 42 H 1.08993 * 109.47270 * 64.99955 * 17 16 15 43 43 H 0.97003 * 119.99789 * 180.02562 * 21 20 18 44 44 H 1.08996 * 109.49539 * 301.40713 * 26 16 15 45 45 H 1.09008 * 109.49378 * 181.31517 * 26 16 15 46 46 H 1.09000 * 109.58750 * 353.41706 * 27 13 11 47 47 H 1.09001 * 109.58882 * 113.84423 * 27 13 11 48 48 H 1.09004 * 109.50507 * 50.74824 * 28 8 7 49 49 H 1.09002 * 109.50738 * 170.83225 * 28 8 7 50 50 H 1.09001 * 109.71794 * 44.39722 * 29 4 3 51 51 H 1.09007 * 109.71637 * 283.75112 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2820 1.0867 0.0000 4 6 3.5363 0.7326 0.0005 5 7 3.5897 -0.6132 -0.0008 6 7 2.2676 -1.0662 0.0005 7 6 4.8198 -1.4051 -0.0038 8 6 5.9851 -0.5048 -0.4300 9 1 5.8837 -0.2550 -1.4862 10 7 7.2510 -1.2097 -0.2141 11 6 7.7242 -2.0491 -1.1565 12 8 7.1487 -2.1528 -2.2225 13 7 8.8352 -2.7736 -0.9171 14 6 9.2985 -3.7758 -1.8865 15 6 10.7631 -3.4878 -2.2312 16 6 11.5854 -3.4334 -0.9417 17 6 13.0549 -3.1803 -1.2844 18 6 13.8829 -3.2488 -0.0272 19 1 13.4085 -3.4520 0.9215 20 6 15.2461 -3.0509 -0.0879 21 7 15.8238 -2.8029 -1.2430 22 14 16.2724 -3.1350 1.4707 23 1 16.1321 -4.4803 2.0837 24 1 17.6987 -2.8895 1.1380 25 1 15.8025 -2.1028 2.4292 26 6 11.0672 -2.3015 -0.0516 27 6 9.6060 -2.5760 0.3179 28 6 5.9683 0.7809 0.4023 29 6 4.7522 1.6266 0.0013 30 1 -0.3633 0.0004 -1.0276 31 1 -0.3633 -0.8902 0.5136 32 1 -0.3634 0.8898 0.5142 33 1 4.7205 -2.2317 -0.7073 34 1 5.0061 -1.7946 0.9970 35 1 7.7488 -1.0723 0.6070 36 1 8.6921 -3.7176 -2.7904 37 1 9.2146 -4.7715 -1.4511 38 1 11.1478 -4.2790 -2.8748 39 1 10.8338 -2.5309 -2.7484 40 1 11.4944 -4.3821 -0.4127 41 1 13.3996 -3.9380 -1.9881 42 1 13.1582 -2.1929 -1.7342 43 1 16.7829 -2.6640 -1.2858 44 1 11.1350 -1.3558 -0.5892 45 1 11.6682 -2.2483 0.8563 46 1 9.2025 -1.7262 0.8685 47 1 9.5472 -3.4739 0.9330 48 1 5.9038 0.5284 1.4607 49 1 6.8820 1.3459 0.2178 50 1 4.6138 2.4350 0.7193 51 1 4.9044 2.0411 -0.9953 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000514859951.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:19:10 Heat of formation + Delta-G solvation = 45.584727 kcal Electronic energy + Delta-G solvation = -30528.938955 eV Core-core repulsion = 26464.361628 eV Total energy + Delta-G solvation = -4064.577327 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.64868 -40.57773 -38.29073 -37.07716 -34.40799 -33.92663 -33.59352 -32.25272 -31.53299 -30.70078 -29.67095 -28.37858 -27.55154 -24.88742 -24.46058 -23.18961 -22.83425 -21.88084 -20.96136 -20.29262 -20.08764 -19.21323 -17.95685 -17.28023 -16.72988 -16.36210 -16.17425 -15.60205 -15.30033 -14.93074 -14.68322 -14.59923 -14.49169 -14.13647 -13.81436 -13.58464 -13.57532 -13.34663 -13.12735 -12.94874 -12.90679 -12.79651 -12.35439 -12.30419 -12.12515 -11.87356 -11.62870 -11.50120 -11.24884 -11.06417 -10.91258 -10.74292 -10.55016 -10.30756 -10.22898 -10.13039 -9.98529 -9.72510 -9.61727 -9.50496 -9.33254 -9.03936 -8.42133 -8.39063 -6.05140 -4.07706 1.31811 1.83253 2.52245 2.59107 3.05464 3.27094 3.33142 3.33888 3.52123 3.66332 3.89362 4.02849 4.29065 4.37999 4.39846 4.51875 4.71478 4.82954 4.94657 5.02915 5.10129 5.19965 5.23452 5.25551 5.28806 5.34084 5.37626 5.42999 5.44497 5.50394 5.51752 5.58305 5.65189 5.91168 5.99687 6.05452 6.06991 6.18543 6.23145 6.30933 6.41322 6.48956 6.53133 6.85478 6.90373 6.91798 7.03871 7.60798 7.74975 7.79675 7.84487 7.94080 8.35844 8.45443 8.98573 9.56261 11.05903 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.024933 B = 0.001868 C = 0.001802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.719934 B =14987.676762 C =15531.836132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.214 3.786 3 N -0.538 5.538 4 C 0.275 3.725 5 N -0.370 5.370 6 N -0.313 5.313 7 C 0.116 3.884 8 C 0.154 3.846 9 H 0.105 0.895 10 N -0.741 5.741 11 C 0.708 3.292 12 O -0.593 6.593 13 N -0.618 5.618 14 C 0.129 3.871 15 C -0.130 4.130 16 C -0.080 4.080 17 C 0.027 3.973 18 C -0.519 4.519 19 H 0.055 0.945 20 C 0.057 3.943 21 N -0.894 5.894 22 Si 0.890 3.110 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.278 1.278 26 C -0.119 4.119 27 C 0.109 3.891 28 C -0.137 4.137 29 C -0.035 4.035 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.102 0.898 34 H 0.090 0.910 35 H 0.402 0.598 36 H 0.087 0.913 37 H 0.063 0.937 38 H 0.071 0.929 39 H 0.061 0.939 40 H 0.058 0.942 41 H 0.016 0.984 42 H 0.015 0.985 43 H 0.261 0.739 44 H 0.059 0.941 45 H 0.085 0.915 46 H 0.067 0.933 47 H 0.068 0.932 48 H 0.080 0.920 49 H 0.100 0.900 50 H 0.111 0.889 51 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.084 6.896 4.973 25.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.067 4.067 3 N -0.267 5.267 4 C -0.001 4.001 5 N -0.161 5.161 6 N -0.142 5.142 7 C -0.008 4.008 8 C 0.046 3.954 9 H 0.123 0.877 10 N -0.400 5.400 11 C 0.410 3.590 12 O -0.471 6.471 13 N -0.355 5.355 14 C 0.006 3.994 15 C -0.169 4.169 16 C -0.099 4.099 17 C -0.009 4.009 18 C -0.557 4.557 19 H 0.073 0.927 20 C -0.144 4.144 21 N -0.533 5.533 22 Si 0.718 3.282 23 H -0.203 1.203 24 H -0.214 1.214 25 H -0.203 1.203 26 C -0.157 4.157 27 C -0.014 4.014 28 C -0.176 4.176 29 C -0.076 4.076 30 H 0.101 0.899 31 H 0.099 0.901 32 H 0.104 0.896 33 H 0.120 0.880 34 H 0.108 0.892 35 H 0.240 0.760 36 H 0.105 0.895 37 H 0.081 0.919 38 H 0.090 0.910 39 H 0.080 0.920 40 H 0.077 0.923 41 H 0.035 0.965 42 H 0.034 0.966 43 H 0.070 0.930 44 H 0.078 0.922 45 H 0.103 0.897 46 H 0.085 0.915 47 H 0.086 0.914 48 H 0.099 0.901 49 H 0.118 0.882 50 H 0.129 0.871 51 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -24.641 6.331 4.107 25.770 hybrid contribution 1.319 -0.107 1.291 1.849 sum -23.322 6.224 5.398 24.734 Atomic orbital electron populations 1.20074 0.83846 1.03940 1.03716 1.24433 0.98271 0.85501 0.98531 1.70167 0.99805 1.30862 1.25852 1.24305 0.95089 0.83996 0.96737 1.50076 1.05632 1.05777 1.54580 1.77962 0.86547 1.22567 1.27151 1.22370 0.79155 0.95143 1.04103 1.20922 0.81961 0.90253 1.02306 0.87732 1.45138 1.23705 1.48803 1.22316 1.15823 0.80919 0.78846 0.83445 1.90914 1.61438 1.70344 1.24408 1.47369 1.25392 1.40249 1.22454 1.21599 0.96012 0.89521 0.92244 1.22048 0.93297 1.02201 0.99319 1.21180 0.97910 0.97241 0.93538 1.19120 0.88031 0.97032 0.96766 1.21185 0.92143 1.48421 0.93933 0.92683 1.25025 0.98143 0.95411 0.95851 1.69952 1.10599 1.48635 1.24142 0.86705 0.79367 0.78498 0.83676 1.20310 1.21356 1.20317 1.21904 0.92343 0.99626 1.01810 1.21838 0.93518 1.00637 0.85420 1.22067 0.99486 0.95322 1.00686 1.20324 0.86159 0.95750 1.05322 0.89880 0.90069 0.89595 0.87994 0.89207 0.76023 0.89492 0.91860 0.91032 0.92020 0.92321 0.96550 0.96646 0.92955 0.92229 0.89661 0.91524 0.91356 0.90105 0.88152 0.87115 0.87665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.41 10.51 36.00 0.38 -0.04 16 2 C 0.21 2.51 8.15 -156.43 -1.27 1.23 16 3 N -0.54 -6.47 11.18 -8.03 -0.09 -6.56 16 4 C 0.28 2.84 7.72 -155.77 -1.20 1.64 16 5 N -0.37 -4.18 4.04 -58.30 -0.24 -4.41 16 6 N -0.31 -4.08 12.74 32.50 0.41 -3.67 16 7 C 0.12 1.10 6.87 -4.00 -0.03 1.07 16 8 C 0.15 1.26 2.51 -67.69 -0.17 1.09 16 9 H 0.10 1.08 7.49 -51.93 -0.39 0.69 16 10 N -0.74 -6.72 4.99 -58.44 -0.29 -7.01 16 11 C 0.71 9.39 8.26 -86.91 -0.72 8.67 16 12 O -0.59 -9.98 15.39 5.29 0.08 -9.90 16 13 N -0.62 -8.10 2.97 -178.50 -0.53 -8.63 16 14 C 0.13 1.80 6.44 -3.71 -0.02 1.77 16 15 C -0.13 -2.07 5.36 -26.61 -0.14 -2.22 16 16 C -0.08 -1.45 2.10 -90.58 -0.19 -1.64 16 17 C 0.03 0.66 4.45 -27.88 -0.12 0.53 16 18 C -0.52 -13.56 8.39 -34.44 -0.29 -13.85 16 19 H 0.05 1.37 7.05 -52.49 -0.37 1.00 16 20 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 21 N -0.89 -25.95 13.29 55.43 0.74 -25.22 16 22 Si 0.89 20.68 29.54 -169.99 -5.02 15.66 16 23 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 24 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 25 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 26 C -0.12 -1.85 5.19 -26.61 -0.14 -1.99 16 27 C 0.11 1.26 6.39 -3.71 -0.02 1.24 16 28 C -0.14 -0.71 5.43 -26.41 -0.14 -0.85 16 29 C -0.04 -0.21 6.33 -27.54 -0.17 -0.39 16 30 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.08 0.50 8.14 -51.92 -0.42 0.08 16 32 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.40 2.75 6.09 -40.82 -0.25 2.50 16 36 H 0.09 1.27 6.99 -51.93 -0.36 0.91 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.07 1.11 8.14 -51.92 -0.42 0.69 16 39 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 40 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 43 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 44 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 45 H 0.08 1.42 6.91 -51.92 -0.36 1.06 16 46 H 0.07 0.57 5.65 -51.93 -0.29 0.28 16 47 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 48 H 0.08 0.35 8.12 -51.93 -0.42 -0.07 16 49 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 50 H 0.11 0.49 8.14 -51.93 -0.42 0.07 16 51 H 0.11 0.55 8.14 -51.93 -0.42 0.12 16 LS Contribution 401.91 15.07 6.06 6.06 Total: -1.00 -34.59 401.91 -11.58 -46.17 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: -8.34 Total: -0.23 kcal Atomic # 6 Polarization: 2.10 SS G_CDS: -4.36 Total: -2.26 kcal Atomic # 7 Polarization: -55.50 SS G_CDS: 0.00 Total: -55.50 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: 0.08 Total: -9.90 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.59 -11.58 -46.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000514859951.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.755 kcal (2) G-P(sol) polarization free energy of solvation -34.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds