Wall clock time and date at job start Wed Apr 1 2020 05:19:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.33474 * 125.49661 * 2 1 4 4 C 1.30331 * 109.73123 * 179.97438 * 3 2 1 5 5 N 1.34685 * 108.03698 * 0.07845 * 4 3 2 6 6 N 1.30974 * 125.50307 * 179.97438 * 2 1 3 7 7 C 1.46297 * 125.04174 * 179.85643 * 5 4 3 8 8 C 1.53303 * 108.77494 * 342.97175 * 7 5 4 9 9 H 1.09006 * 109.46706 * 290.15071 * 8 7 5 10 10 N 1.46495 * 109.46882 * 170.14862 * 8 7 5 11 11 C 1.34780 * 119.99843 * 85.00250 * 10 8 7 12 12 O 1.21582 * 119.99960 * 4.97781 * 11 10 8 13 13 N 1.34778 * 119.99745 * 184.98546 * 11 10 8 14 14 C 1.46932 * 120.62544 * 174.76233 * 13 11 10 15 15 C 1.53192 * 108.76730 * 126.37229 * 14 13 11 16 16 C 1.53035 * 109.31821 * 54.63392 * 15 14 13 17 17 C 1.53001 * 109.46286 * 178.61117 * 16 15 14 18 18 C 1.50700 * 109.46994 * 185.00389 * 17 16 15 19 19 H 1.07998 * 120.00084 * 359.97438 * 18 17 16 20 20 C 1.37880 * 119.99782 * 180.02562 * 18 17 16 21 21 N 1.31516 * 120.00077 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99946 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47096 * 59.99854 * 22 20 18 24 24 H 1.48500 * 109.47081 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47193 * 299.99718 * 22 20 18 26 26 C 1.53041 * 109.53742 * 298.63472 * 16 15 14 27 27 C 1.46918 * 120.63218 * 354.74599 * 13 11 10 28 28 C 1.53164 * 109.48155 * 50.14434 * 8 7 5 29 29 C 1.50920 * 127.90892 * 180.02562 * 4 3 2 30 30 H 1.08994 * 109.47120 * 89.97847 * 1 2 3 31 31 H 1.09008 * 109.46812 * 209.97999 * 1 2 3 32 32 H 1.09003 * 109.47435 * 329.97458 * 1 2 3 33 33 H 1.09001 * 109.58088 * 223.19346 * 7 5 4 34 34 H 1.08997 * 109.59175 * 102.76504 * 7 5 4 35 35 H 0.96994 * 120.00328 * 264.99214 * 10 8 7 36 36 H 1.08997 * 109.58683 * 6.58666 * 14 13 11 37 37 H 1.08995 * 109.58455 * 246.15410 * 14 13 11 38 38 H 1.09007 * 109.49687 * 174.58549 * 15 14 13 39 39 H 1.09000 * 109.50042 * 294.67820 * 15 14 13 40 40 H 1.09005 * 109.45787 * 58.65540 * 16 15 14 41 41 H 1.08997 * 109.46993 * 304.99860 * 17 16 15 42 42 H 1.08993 * 109.47270 * 64.99955 * 17 16 15 43 43 H 0.97003 * 119.99789 * 180.02562 * 21 20 18 44 44 H 1.08996 * 109.49539 * 301.40713 * 26 16 15 45 45 H 1.09008 * 109.49378 * 181.31517 * 26 16 15 46 46 H 1.09000 * 109.58750 * 353.41706 * 27 13 11 47 47 H 1.09001 * 109.58882 * 113.84423 * 27 13 11 48 48 H 1.09004 * 109.50507 * 50.74824 * 28 8 7 49 49 H 1.09002 * 109.50738 * 170.83225 * 28 8 7 50 50 H 1.09001 * 109.71794 * 44.39722 * 29 4 3 51 51 H 1.09007 * 109.71637 * 283.75112 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2820 1.0867 0.0000 4 6 3.5363 0.7326 0.0005 5 7 3.5897 -0.6132 -0.0008 6 7 2.2676 -1.0662 0.0005 7 6 4.8198 -1.4051 -0.0038 8 6 5.9851 -0.5048 -0.4300 9 1 5.8837 -0.2550 -1.4862 10 7 7.2510 -1.2097 -0.2141 11 6 7.7242 -2.0491 -1.1565 12 8 7.1487 -2.1528 -2.2225 13 7 8.8352 -2.7736 -0.9171 14 6 9.2985 -3.7758 -1.8865 15 6 10.7631 -3.4878 -2.2312 16 6 11.5854 -3.4334 -0.9417 17 6 13.0549 -3.1803 -1.2844 18 6 13.8829 -3.2488 -0.0272 19 1 13.4085 -3.4520 0.9215 20 6 15.2461 -3.0509 -0.0879 21 7 15.8238 -2.8029 -1.2430 22 14 16.2724 -3.1350 1.4707 23 1 16.1321 -4.4803 2.0837 24 1 17.6987 -2.8895 1.1380 25 1 15.8025 -2.1028 2.4292 26 6 11.0672 -2.3015 -0.0516 27 6 9.6060 -2.5760 0.3179 28 6 5.9683 0.7809 0.4023 29 6 4.7522 1.6266 0.0013 30 1 -0.3633 0.0004 -1.0276 31 1 -0.3633 -0.8902 0.5136 32 1 -0.3634 0.8898 0.5142 33 1 4.7205 -2.2317 -0.7073 34 1 5.0061 -1.7946 0.9970 35 1 7.7488 -1.0723 0.6070 36 1 8.6921 -3.7176 -2.7904 37 1 9.2146 -4.7715 -1.4511 38 1 11.1478 -4.2790 -2.8748 39 1 10.8338 -2.5309 -2.7484 40 1 11.4944 -4.3821 -0.4127 41 1 13.3996 -3.9380 -1.9881 42 1 13.1582 -2.1929 -1.7342 43 1 16.7829 -2.6640 -1.2858 44 1 11.1350 -1.3558 -0.5892 45 1 11.6682 -2.2483 0.8563 46 1 9.2025 -1.7262 0.8685 47 1 9.5472 -3.4739 0.9330 48 1 5.9038 0.5284 1.4607 49 1 6.8820 1.3459 0.2178 50 1 4.6138 2.4350 0.7193 51 1 4.9044 2.0411 -0.9953 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000514859951.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:19:09 Heat of formation + Delta-G solvation = 24.257546 kcal Electronic energy + Delta-G solvation = -30529.863771 eV Core-core repulsion = 26464.361628 eV Total energy + Delta-G solvation = -4065.502143 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -43.42627 -41.59279 -39.28891 -38.09914 -35.73047 -35.10277 -34.28805 -33.90033 -32.41716 -31.75136 -30.44458 -29.79718 -28.51212 -26.31234 -25.26750 -24.24024 -23.91882 -23.17280 -21.80994 -21.38665 -20.99947 -20.28887 -18.97754 -18.37706 -18.07125 -17.55984 -17.07588 -16.54604 -16.47024 -16.09496 -15.80891 -15.41651 -15.20327 -15.18431 -15.12794 -14.68195 -14.55778 -14.30379 -14.27023 -14.08579 -13.81032 -13.56888 -13.44956 -13.34814 -12.95184 -12.88709 -12.82570 -12.72447 -12.47066 -12.32475 -12.19334 -12.13014 -12.09106 -11.74840 -11.43603 -11.25432 -11.13583 -10.97399 -10.82555 -10.80023 -10.49320 -10.47809 -10.31679 -9.50781 -8.13907 -6.23600 0.53202 1.06623 1.43787 1.45816 1.53231 1.63990 1.78840 2.03860 2.44714 2.79683 2.91137 3.19353 3.20140 3.44744 3.68989 3.74357 3.90172 3.94433 4.02808 4.10009 4.13750 4.22795 4.27697 4.37395 4.43575 4.52072 4.56309 4.69797 4.71194 4.74542 4.82674 4.86653 4.90847 4.92280 4.93359 4.97977 5.02784 5.12208 5.26326 5.29054 5.33095 5.35512 5.41817 5.45197 5.56895 5.60653 5.77917 5.84097 5.91780 5.94700 6.31105 6.88066 6.93607 7.04043 7.45328 7.46152 8.97676 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.024933 B = 0.001868 C = 0.001802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.719934 B =14987.676762 C =15531.836132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.205 3.795 3 N -0.564 5.564 4 C 0.274 3.726 5 N -0.380 5.380 6 N -0.354 5.354 7 C 0.120 3.880 8 C 0.159 3.841 9 H 0.082 0.918 10 N -0.721 5.721 11 C 0.706 3.294 12 O -0.632 6.632 13 N -0.621 5.621 14 C 0.137 3.863 15 C -0.122 4.122 16 C -0.073 4.073 17 C 0.031 3.969 18 C -0.525 4.525 19 H 0.070 0.930 20 C -0.004 4.004 21 N -0.938 5.938 22 Si 0.960 3.040 23 H -0.268 1.268 24 H -0.292 1.292 25 H -0.263 1.263 26 C -0.114 4.114 27 C 0.117 3.883 28 C -0.125 4.125 29 C -0.033 4.033 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.098 0.902 33 H 0.075 0.925 34 H 0.106 0.894 35 H 0.417 0.583 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.069 0.931 39 H 0.044 0.956 40 H 0.064 0.936 41 H -0.017 1.017 42 H -0.016 1.016 43 H 0.260 0.740 44 H 0.045 0.955 45 H 0.078 0.922 46 H 0.105 0.895 47 H 0.086 0.914 48 H 0.098 0.902 49 H 0.122 0.878 50 H 0.134 0.866 51 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.003 7.813 7.943 27.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.076 4.076 3 N -0.293 5.293 4 C -0.002 4.002 5 N -0.170 5.170 6 N -0.183 5.183 7 C -0.004 4.004 8 C 0.051 3.949 9 H 0.100 0.900 10 N -0.380 5.380 11 C 0.407 3.593 12 O -0.514 6.514 13 N -0.357 5.357 14 C 0.013 3.987 15 C -0.161 4.161 16 C -0.092 4.092 17 C -0.006 4.006 18 C -0.563 4.563 19 H 0.088 0.912 20 C -0.201 4.201 21 N -0.579 5.579 22 Si 0.785 3.215 23 H -0.193 1.193 24 H -0.218 1.218 25 H -0.188 1.188 26 C -0.152 4.152 27 C -0.005 4.005 28 C -0.163 4.163 29 C -0.073 4.073 30 H 0.111 0.889 31 H 0.109 0.891 32 H 0.117 0.883 33 H 0.094 0.906 34 H 0.124 0.876 35 H 0.258 0.742 36 H 0.097 0.903 37 H 0.100 0.900 38 H 0.087 0.913 39 H 0.063 0.937 40 H 0.082 0.918 41 H 0.002 0.998 42 H 0.002 0.998 43 H 0.068 0.932 44 H 0.064 0.936 45 H 0.096 0.904 46 H 0.123 0.877 47 H 0.104 0.896 48 H 0.117 0.883 49 H 0.140 0.860 50 H 0.152 0.848 51 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -25.570 7.258 7.127 27.519 hybrid contribution 1.598 -0.385 0.283 1.668 sum -23.971 6.873 7.410 26.015 Atomic orbital electron populations 1.20237 0.81500 1.05013 1.04682 1.25191 0.99842 0.85196 0.97414 1.70207 1.00687 1.31279 1.27123 1.25156 0.95940 0.84103 0.94971 1.50162 1.05458 1.06388 1.55022 1.77889 0.87606 1.23886 1.28911 1.22369 0.79144 0.94649 1.04238 1.20920 0.80910 0.91292 1.01777 0.90033 1.44926 1.23738 1.47440 1.21890 1.15981 0.80719 0.79057 0.83514 1.90897 1.62564 1.71546 1.26369 1.47380 1.25613 1.39997 1.22708 1.21441 0.93827 0.90730 0.92654 1.21923 0.94761 1.01288 0.98108 1.21030 0.94364 0.98608 0.95161 1.19030 0.92081 0.94116 0.95363 1.21647 0.92555 1.47124 0.95023 0.91220 1.25978 0.99807 0.95238 0.99118 1.70115 1.10768 1.50297 1.26684 0.85572 0.77116 0.79122 0.79655 1.19303 1.21796 1.18762 1.21786 0.95189 0.97715 1.00489 1.21871 0.90456 1.03192 0.84980 1.22058 0.99957 0.93399 1.00903 1.20584 0.84490 0.95613 1.06637 0.88855 0.89141 0.88322 0.90611 0.87624 0.74235 0.90319 0.90046 0.91286 0.93718 0.91807 0.99835 0.99784 0.93163 0.93575 0.90376 0.87667 0.89556 0.88297 0.85983 0.84801 0.86753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.77 10.51 71.23 0.75 -0.02 16 2 C 0.21 4.72 8.15 138.48 1.13 5.85 16 3 N -0.56 -13.06 11.18 -179.31 -2.01 -15.07 16 4 C 0.27 5.29 7.72 138.36 1.07 6.36 16 5 N -0.38 -8.35 4.04 -338.35 -1.37 -9.71 16 6 N -0.35 -9.25 12.74 -51.08 -0.65 -9.90 16 7 C 0.12 2.15 6.87 86.52 0.59 2.74 16 8 C 0.16 2.30 2.51 45.15 0.11 2.41 16 9 H 0.08 1.62 7.49 -2.38 -0.02 1.61 16 10 N -0.72 -11.07 4.99 -457.06 -2.28 -13.35 16 11 C 0.71 17.56 8.26 179.05 1.48 19.04 16 12 O -0.63 -21.19 15.39 -3.97 -0.06 -21.25 16 13 N -0.62 -15.00 2.97 -836.92 -2.49 -17.49 16 14 C 0.14 3.67 6.44 86.36 0.56 4.23 16 15 C -0.12 -3.94 5.36 30.67 0.16 -3.77 16 16 C -0.07 -2.63 2.10 -10.77 -0.02 -2.65 16 17 C 0.03 1.54 4.45 29.85 0.13 1.68 16 18 C -0.53 -27.57 8.39 25.60 0.21 -27.35 16 19 H 0.07 3.38 7.05 -2.91 -0.02 3.36 16 20 C 0.00 -0.24 5.46 84.66 0.46 0.22 16 21 N -0.94 -55.90 13.29 21.45 0.28 -55.62 16 22 Si 0.96 42.14 29.54 68.60 2.03 44.17 16 23 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 24 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 25 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 26 C -0.11 -3.36 5.19 30.67 0.16 -3.20 16 27 C 0.12 2.32 6.39 86.36 0.55 2.87 16 28 C -0.13 -0.84 5.43 30.80 0.17 -0.67 16 29 C -0.03 -0.31 6.33 30.07 0.19 -0.12 16 30 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.09 1.05 8.14 -2.38 -0.02 1.03 16 32 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.42 3.87 6.09 -92.71 -0.56 3.30 16 36 H 0.08 2.29 6.99 -2.39 -0.02 2.27 16 37 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.07 2.22 8.14 -2.38 -0.02 2.20 16 39 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.06 2.24 8.14 -2.38 -0.02 2.22 16 41 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 42 H -0.02 -0.90 8.14 -2.39 -0.02 -0.92 16 43 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 44 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 45 H 0.08 2.44 6.91 -2.38 -0.02 2.42 16 46 H 0.11 1.29 5.65 -2.39 -0.01 1.28 16 47 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 48 H 0.10 0.39 8.12 -2.38 -0.02 0.37 16 49 H 0.12 0.40 8.14 -2.39 -0.02 0.38 16 50 H 0.13 0.68 8.14 -2.39 -0.02 0.66 16 51 H 0.11 0.89 8.14 -2.38 -0.02 0.87 16 Total: -1.00 -79.21 401.91 1.54 -77.67 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: 0.37 Total: 12.92 kcal Atomic # 6 Polarization: -0.08 SS G_CDS: 7.71 Total: 7.63 kcal Atomic # 7 Polarization: -112.64 SS G_CDS: -8.51 Total: -121.14 kcal Atomic # 8 Polarization: -21.19 SS G_CDS: -0.06 Total: -21.25 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.17 kcal Total: -79.21 1.54 -77.67 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000514859951.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.932 kcal (2) G-P(sol) polarization free energy of solvation -79.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds