Wall clock time and date at job start Wed Apr 1 2020 04:47:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46898 * 111.00076 * 2 1 4 4 H 1.08995 * 109.47475 * 324.99765 * 3 2 1 5 5 C 1.53006 * 109.47394 * 84.99798 * 3 2 1 6 6 C 1.53007 * 109.47135 * 204.99753 * 3 2 1 7 7 C 1.50705 * 109.46864 * 64.99860 * 6 3 2 8 8 N 1.29946 * 126.28339 * 270.02332 * 7 6 3 9 9 O 1.21304 * 110.24532 * 179.68665 * 8 7 6 10 10 C 1.33645 * 109.81162 * 0.47115 * 9 8 7 11 11 C 1.50695 * 126.55024 * 179.80590 * 10 9 8 12 12 C 1.52999 * 109.46918 * 269.68462 * 11 10 9 13 13 C 1.50702 * 109.47451 * 180.02562 * 12 11 10 14 14 C 1.39866 * 126.04287 * 89.96846 * 13 12 11 15 15 C 1.50705 * 125.89802 * 0.03191 * 14 13 12 16 16 N 1.30837 * 108.20458 * 180.02562 * 14 13 12 17 17 N 1.40086 * 108.20700 * 0.02562 * 16 14 13 18 18 C 1.46491 * 126.04129 * 179.97438 * 17 16 14 19 19 C 1.50702 * 109.46957 * 90.02579 * 18 17 16 20 20 H 1.08002 * 120.00299 * 0.02562 * 19 18 17 21 21 C 1.37884 * 119.99942 * 179.72213 * 19 18 17 22 22 N 1.31514 * 119.99698 * 0.28408 * 21 19 18 23 23 Si 1.86794 * 119.99837 * 180.27476 * 21 19 18 24 24 H 1.48496 * 109.47341 * 0.02562 * 23 21 19 25 25 H 1.48508 * 109.46983 * 120.00379 * 23 21 19 26 26 H 1.48503 * 109.47491 * 240.00192 * 23 21 19 27 27 C 1.34955 * 107.92007 * 0.26426 * 17 16 14 28 28 C 1.50708 * 126.12162 * 179.73553 * 27 17 16 29 29 N 1.31130 * 106.89841 * 359.53758 * 10 9 8 30 30 H 1.08992 * 109.47119 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46951 * 300.00439 * 1 2 3 32 32 H 1.09000 * 109.46938 * 59.99903 * 1 2 3 33 33 H 1.00896 * 111.00470 * 236.04084 * 2 1 3 34 34 H 1.08999 * 109.47181 * 179.97438 * 5 3 2 35 35 H 1.08996 * 109.46677 * 300.00312 * 5 3 2 36 36 H 1.09002 * 109.46663 * 60.00249 * 5 3 2 37 37 H 1.09004 * 109.46586 * 305.00067 * 6 3 2 38 38 H 1.08998 * 109.46984 * 185.00141 * 6 3 2 39 39 H 1.08997 * 109.47366 * 149.68610 * 11 10 9 40 40 H 1.09000 * 109.47755 * 29.68323 * 11 10 9 41 41 H 1.09001 * 109.47356 * 60.00206 * 12 11 10 42 42 H 1.09002 * 109.47319 * 299.99905 * 12 11 10 43 43 H 1.08999 * 109.46544 * 269.99193 * 15 14 13 44 44 H 1.09000 * 109.47294 * 29.99156 * 15 14 13 45 45 H 1.09002 * 109.46965 * 149.99799 * 15 14 13 46 46 H 1.09004 * 109.47166 * 330.02845 * 18 17 16 47 47 H 1.08994 * 109.47507 * 210.02551 * 18 17 16 48 48 H 0.97005 * 119.99651 * 179.97438 * 22 21 19 49 49 H 1.09003 * 109.47042 * 90.02700 * 28 27 17 50 50 H 1.09007 * 109.46511 * 210.02061 * 28 27 17 51 51 H 1.08991 * 109.47237 * 330.02091 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 1 1.3399 2.0123 -0.5894 5 6 2.0608 1.8927 1.4370 6 6 3.3988 1.3790 -0.6096 7 6 3.3180 0.9829 -2.0614 8 7 3.3979 -0.2247 -2.5347 9 8 3.2904 -0.2100 -3.7428 10 6 3.1370 1.0475 -4.1687 11 6 2.9740 1.4975 -5.5976 12 6 4.3495 1.7909 -6.1999 13 6 4.1867 2.2416 -7.6287 14 6 4.0202 3.5611 -8.0615 15 6 3.9731 4.7814 -7.1785 16 7 3.9125 3.5530 -9.3655 17 7 4.0067 2.2260 -9.8042 18 6 3.9353 1.7709 -11.1948 19 6 5.3200 1.7531 -11.7892 20 1 6.1684 2.0507 -11.1909 21 6 5.5045 1.3510 -13.0952 22 7 4.4715 0.9883 -13.8237 23 14 7.2218 1.3217 -13.8295 24 1 8.2037 1.7721 -12.8106 25 1 7.5532 -0.0609 -14.2585 26 1 7.2739 2.2299 -15.0033 27 6 4.1683 1.4403 -8.7189 28 6 4.3080 -0.0603 -8.7214 29 7 3.1494 1.8143 -3.1051 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8307 -0.5262 -0.7813 34 1 2.4519 2.9101 1.4370 35 1 1.0611 1.8872 1.8713 36 1 2.7166 1.2518 2.0265 37 1 4.0312 0.6706 -0.0744 38 1 3.8246 2.3791 -0.5289 39 1 2.3644 2.4006 -5.6269 40 1 2.4859 0.7108 -6.1730 41 1 4.9592 0.8878 -6.1706 42 1 4.8377 2.5776 -5.6246 43 1 2.9425 4.9749 -6.8809 44 1 4.5818 4.6112 -6.2905 45 1 4.3607 5.6409 -7.7256 46 1 3.3028 2.4495 -11.7672 47 1 3.5131 0.7665 -11.2272 48 1 4.6013 0.7057 -14.7425 49 1 5.3616 -0.3270 -8.8046 50 1 3.9031 -0.4643 -7.7934 51 1 3.7603 -0.4748 -9.5676 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000563117921.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:39 Heat of formation + Delta-G solvation = 96.060125 kcal Electronic energy + Delta-G solvation = -29907.586229 eV Core-core repulsion = 25845.197679 eV Total energy + Delta-G solvation = -4062.388549 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -46.62078 -42.12880 -38.80217 -36.98654 -36.24487 -35.54781 -34.21501 -33.53443 -32.40394 -31.31756 -30.43053 -28.92482 -28.09168 -27.59851 -26.06494 -25.58952 -24.55660 -23.84777 -22.35811 -21.48501 -20.33955 -20.18745 -19.11132 -18.81461 -18.39351 -17.31688 -17.01883 -16.67838 -16.28352 -16.14238 -15.86111 -15.75773 -15.21270 -14.71003 -14.56507 -14.43162 -14.34478 -13.97420 -13.85665 -13.74829 -13.67708 -13.54444 -13.39790 -13.27771 -13.23363 -13.02576 -12.90980 -12.84108 -12.76944 -12.63810 -12.58120 -12.46686 -12.28400 -12.24276 -12.05350 -11.91144 -11.85279 -11.68428 -11.14203 -10.90209 -10.75025 -9.82634 -9.57462 -9.04391 -8.34788 -6.52053 0.11096 1.14154 1.21690 1.34881 1.37394 1.49235 1.77008 1.95303 2.01464 2.33341 2.61419 2.95106 2.95968 3.19359 3.76229 3.80815 3.91156 3.96859 4.10490 4.13271 4.24536 4.29818 4.35874 4.41099 4.46243 4.54172 4.58686 4.65550 4.67855 4.72284 4.75926 4.81216 4.83667 4.89517 4.90528 4.91603 4.92751 4.93732 4.99730 5.03757 5.07886 5.17879 5.23646 5.37505 5.40286 5.51165 5.57731 5.80914 5.94078 6.06251 6.21108 6.33082 6.63355 7.13796 7.14422 7.19426 8.71482 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.022998 B = 0.001841 C = 0.001794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.216032 B =15206.182598 C =15604.594589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.701 5.701 3 C 0.087 3.913 4 H 0.040 0.960 5 C -0.133 4.133 6 C -0.032 4.032 7 C 0.161 3.839 8 N -0.401 5.401 9 O 0.069 5.931 10 C 0.203 3.797 11 C -0.018 4.018 12 C -0.013 4.013 13 C -0.258 4.258 14 C 0.057 3.943 15 C -0.064 4.064 16 N -0.353 5.353 17 N -0.355 5.355 18 C 0.274 3.726 19 C -0.551 4.551 20 H 0.048 0.952 21 C 0.021 3.979 22 N -0.918 5.918 23 Si 0.971 3.029 24 H -0.273 1.273 25 H -0.267 1.267 26 H -0.276 1.276 27 C 0.084 3.916 28 C -0.087 4.087 29 N -0.496 5.496 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.013 0.987 33 H 0.337 0.663 34 H 0.075 0.925 35 H 0.059 0.941 36 H 0.065 0.935 37 H 0.105 0.895 38 H 0.120 0.880 39 H 0.117 0.883 40 H 0.114 0.886 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.089 0.911 44 H 0.095 0.905 45 H 0.062 0.938 46 H 0.018 0.982 47 H 0.048 0.952 48 H 0.273 0.727 49 H 0.078 0.922 50 H 0.113 0.887 51 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.799 -0.862 27.907 28.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.333 5.333 3 C -0.023 4.023 4 H 0.058 0.942 5 C -0.191 4.191 6 C -0.071 4.071 7 C -0.111 4.111 8 N -0.112 5.112 9 O 0.013 5.987 10 C -0.017 4.017 11 C -0.057 4.057 12 C -0.053 4.053 13 C -0.270 4.270 14 C -0.107 4.107 15 C -0.122 4.122 16 N -0.176 5.176 17 N -0.135 5.135 18 C 0.155 3.845 19 C -0.589 4.589 20 H 0.067 0.933 21 C -0.180 4.180 22 N -0.557 5.557 23 Si 0.795 3.205 24 H -0.198 1.198 25 H -0.192 1.192 26 H -0.201 1.201 27 C -0.046 4.046 28 C -0.145 4.145 29 N -0.230 5.230 30 H 0.092 0.908 31 H 0.096 0.904 32 H 0.032 0.968 33 H 0.155 0.845 34 H 0.094 0.906 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.124 0.876 38 H 0.138 0.862 39 H 0.135 0.865 40 H 0.132 0.868 41 H 0.098 0.902 42 H 0.100 0.900 43 H 0.107 0.893 44 H 0.114 0.886 45 H 0.081 0.919 46 H 0.036 0.964 47 H 0.066 0.934 48 H 0.082 0.918 49 H 0.097 0.903 50 H 0.132 0.868 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.894 -0.655 27.907 28.340 hybrid contribution 0.511 -0.234 -1.763 1.851 sum -4.383 -0.889 26.144 26.523 Atomic orbital electron populations 1.22276 0.87076 1.02417 1.00523 1.60629 1.08661 1.13966 1.50095 1.21586 0.93251 0.89418 0.98088 0.94195 1.21737 1.02719 1.01213 0.93382 1.20409 0.99056 1.05165 0.82446 1.26327 0.99909 0.84829 1.00073 1.74641 1.22191 1.23128 0.91209 1.85293 1.65017 1.31971 1.16384 1.29244 0.93409 0.79446 0.99627 1.20433 1.00386 1.04189 0.80718 1.19614 0.94599 1.02095 0.88960 1.19480 1.20900 0.91343 0.95275 1.22790 0.99518 0.97143 0.91289 1.20222 1.03862 0.91258 0.96875 1.77244 1.27436 0.99271 1.13685 1.49000 1.53220 1.03654 1.07604 1.19133 0.97408 0.94703 0.73302 1.21459 0.92762 1.46580 0.98085 0.93349 1.25741 1.01673 0.93861 0.96685 1.70010 1.31791 1.44144 1.09733 0.85317 0.78647 0.78464 0.78108 1.19782 1.19166 1.20100 1.21530 0.99969 0.96108 0.87010 1.20511 1.03424 0.86186 1.04355 1.71947 1.21366 1.32066 0.97645 0.90838 0.90434 0.96817 0.84451 0.90584 0.92237 0.91550 0.87626 0.86220 0.86527 0.86756 0.90178 0.90008 0.89271 0.88644 0.91901 0.96417 0.93383 0.91786 0.90306 0.86815 0.92064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.50 127.69 1.34 1.72 16 2 N -0.70 -11.64 6.66 -514.60 -3.43 -15.07 16 3 C 0.09 1.24 2.64 44.92 0.12 1.36 16 4 H 0.04 0.66 7.80 -2.39 -0.02 0.64 16 5 C -0.13 -1.34 9.42 71.98 0.68 -0.66 16 6 C -0.03 -0.46 5.44 29.85 0.16 -0.29 16 7 C 0.16 3.24 6.80 138.46 0.94 4.19 16 8 N -0.40 -8.90 11.12 -60.32 -0.67 -9.57 16 9 O 0.07 1.48 11.31 74.81 0.85 2.32 16 10 C 0.20 3.94 7.77 88.38 0.69 4.63 16 11 C -0.02 -0.31 5.82 29.85 0.17 -0.14 16 12 C -0.01 -0.27 5.10 29.85 0.15 -0.12 16 13 C -0.26 -7.87 5.35 -20.14 -0.11 -7.98 16 14 C 0.06 1.98 7.22 43.10 0.31 2.30 16 15 C -0.06 -1.55 10.26 71.24 0.73 -0.81 16 16 N -0.35 -15.87 12.58 -47.38 -0.60 -16.47 16 17 N -0.36 -16.30 3.60 -338.41 -1.22 -17.51 16 18 C 0.27 14.31 6.00 85.64 0.51 14.82 16 19 C -0.55 -30.71 9.39 25.60 0.24 -30.47 16 20 H 0.05 2.79 7.81 -2.91 -0.02 2.77 16 21 C 0.02 1.16 5.46 84.66 0.46 1.62 16 22 N -0.92 -51.83 13.29 21.45 0.28 -51.55 16 23 Si 0.97 42.96 29.54 68.60 2.03 44.99 16 24 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 25 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 26 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 27 C 0.08 3.05 6.93 41.41 0.29 3.33 16 28 C -0.09 -2.50 9.72 71.24 0.69 -1.81 16 29 N -0.50 -10.52 11.55 -303.21 -3.50 -14.03 16 30 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.08 0.92 7.44 -2.38 -0.02 0.90 16 32 H 0.01 0.21 8.06 -2.39 -0.02 0.19 16 33 H 0.34 6.46 6.69 -89.70 -0.60 5.86 16 34 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 35 H 0.06 0.60 7.45 -2.39 -0.02 0.58 16 36 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.11 1.41 8.14 -2.38 -0.02 1.39 16 38 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.12 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.08 1.53 7.80 -2.39 -0.02 1.51 16 42 H 0.08 1.59 7.26 -2.39 -0.02 1.57 16 43 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 44 H 0.09 1.82 7.25 -2.39 -0.02 1.80 16 45 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 46 H 0.02 1.02 8.14 -2.38 -0.02 1.00 16 47 H 0.05 2.49 7.04 -2.39 -0.02 2.47 16 48 H 0.27 14.35 8.31 -92.70 -0.77 13.58 16 49 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 50 H 0.11 2.27 7.79 -2.38 -0.02 2.25 16 51 H 0.06 1.92 7.07 -2.39 -0.02 1.90 16 Total: -1.00 -68.70 422.10 1.46 -67.24 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: 0.34 Total: 17.96 kcal Atomic # 6 Polarization: -15.69 SS G_CDS: 7.38 Total: -8.31 kcal Atomic # 7 Polarization: -115.07 SS G_CDS: -9.13 Total: -124.20 kcal Atomic # 8 Polarization: 1.48 SS G_CDS: 0.85 Total: 2.32 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Total: -68.70 1.46 -67.24 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563117921.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.299 kcal (2) G-P(sol) polarization free energy of solvation -68.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.239 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds