Wall clock time and date at job start Wed Apr 1 2020 04:54:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35243 * 126.06937 * 2 1 4 4 C 1.40429 * 107.86058 * 180.02562 * 3 2 1 5 5 N 1.39991 * 125.97337 * 179.97438 * 4 3 2 6 6 C 1.46846 * 110.99767 * 180.02562 * 5 4 3 7 7 C 1.53036 * 109.52387 * 185.83900 * 6 5 4 8 8 C 1.53119 * 109.28230 * 300.82481 * 7 6 5 9 9 N 1.46497 * 109.52620 * 177.55730 * 8 7 6 10 10 C 1.34780 * 119.99719 * 154.99552 * 9 8 7 11 11 O 1.21578 * 120.00108 * 359.97438 * 10 9 8 12 12 N 1.34777 * 119.99704 * 179.97438 * 10 9 8 13 13 C 1.46498 * 119.99966 * 180.02562 * 12 10 9 14 14 C 1.53006 * 109.46847 * 184.79711 * 13 12 10 15 15 C 1.50694 * 115.55031 * 294.81434 * 14 13 12 16 16 H 1.08008 * 119.99906 * 95.20931 * 15 14 13 17 17 C 1.37882 * 120.00284 * 274.93190 * 15 14 13 18 18 N 1.31518 * 119.99808 * 355.41947 * 17 15 14 19 19 Si 1.86800 * 120.00242 * 175.41794 * 17 15 14 20 20 H 1.48502 * 109.47002 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.47091 * 119.99801 * 19 17 15 22 22 H 1.48497 * 109.47138 * 240.00628 * 19 17 15 23 23 C 1.53003 * 117.49932 * 80.48760 * 14 13 12 24 24 C 1.52998 * 117.49502 * 149.14904 * 14 13 12 25 25 C 1.53114 * 109.16068 * 57.64762 * 8 7 6 26 26 C 1.46851 * 111.00199 * 304.21022 * 5 4 3 27 27 N 1.31221 * 108.04981 * 0.24233 * 4 3 2 28 28 N 1.34963 * 126.06649 * 180.02562 * 2 1 3 29 29 H 0.97000 * 125.97273 * 0.02562 * 28 2 1 30 30 H 1.09004 * 109.47203 * 89.99622 * 1 2 3 31 31 H 1.08993 * 109.47255 * 209.99749 * 1 2 3 32 32 H 1.09000 * 109.46784 * 330.00121 * 1 2 3 33 33 H 1.07999 * 126.06876 * 0.04278 * 3 2 1 34 34 H 1.09005 * 109.46727 * 65.82497 * 6 5 4 35 35 H 1.09005 * 109.46429 * 305.85506 * 6 5 4 36 36 H 1.09005 * 109.50717 * 180.87846 * 7 6 5 37 37 H 1.09002 * 109.50194 * 60.76246 * 7 6 5 38 38 H 1.09004 * 109.51769 * 297.68319 * 8 7 6 39 39 H 0.96996 * 119.99936 * 334.99838 * 9 8 7 40 40 H 0.97009 * 119.99753 * 0.02562 * 12 10 9 41 41 H 1.08993 * 109.47219 * 64.80231 * 13 12 10 42 42 H 1.09000 * 109.47241 * 304.79395 * 13 12 10 43 43 H 0.97001 * 119.99858 * 184.99726 * 18 17 15 44 44 H 1.08997 * 117.49622 * 214.99831 * 23 14 13 45 45 H 1.09000 * 117.49928 * 0.02562 * 23 14 13 46 46 H 1.08996 * 117.50254 * 359.97148 * 24 14 13 47 47 H 1.09005 * 117.49689 * 144.97447 * 24 14 13 48 48 H 1.08997 * 109.50499 * 62.29254 * 25 8 7 49 49 H 1.09003 * 109.50569 * 182.40832 * 25 8 7 50 50 H 1.08996 * 109.45792 * 294.17520 * 26 5 4 51 51 H 1.08997 * 109.46150 * 54.14426 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3033 1.0932 0.0000 4 6 3.6372 0.6544 -0.0006 5 7 4.7724 1.4736 -0.0013 6 6 6.0014 0.6699 -0.0024 7 6 7.2149 1.5908 0.1436 8 6 7.2346 2.5891 -1.0172 9 7 8.3612 3.5107 -0.8514 10 6 8.8937 4.1244 -1.9268 11 8 8.4393 3.9128 -3.0344 12 7 9.9299 4.9726 -1.7741 13 6 10.5083 5.6401 -2.9429 14 6 11.7353 6.4474 -2.5138 15 6 11.4611 7.6032 -1.5866 16 1 11.5588 7.4738 -0.5187 17 6 11.0910 8.8275 -2.1017 18 7 11.0646 9.0124 -3.4035 19 14 10.6271 10.2236 -0.9504 20 1 10.7379 9.7623 0.4568 21 1 11.5447 11.3706 -1.1685 22 1 9.2306 10.6476 -1.2242 23 6 13.0504 5.6881 -2.3267 24 6 12.8644 6.6119 -3.5331 25 6 5.9233 3.3796 -1.0226 26 6 4.7475 2.4064 -1.1352 27 7 3.6336 -0.6578 -0.0062 28 7 2.3015 -1.0910 -0.0005 29 1 2.0024 -2.0137 -0.0013 30 1 -0.3634 0.0001 -1.0277 31 1 -0.3633 -0.8899 0.5138 32 1 -0.3633 0.8900 0.5138 33 1 1.9720 2.1211 0.0007 34 1 6.0743 0.1190 -0.9402 35 1 5.9765 -0.0329 0.8305 36 1 8.1278 0.9953 0.1271 37 1 7.1497 2.1318 1.0876 38 1 7.3401 2.0504 -1.9590 39 1 8.7240 3.6791 0.0323 40 1 10.2926 5.1411 -0.8903 41 1 9.7687 6.3094 -3.3822 42 1 10.8045 4.8925 -3.6788 43 1 10.8751 9.8925 -3.7646 44 1 13.7172 6.0247 -1.5329 45 1 13.0416 4.6136 -2.5096 46 1 12.7334 6.1446 -4.5091 47 1 13.4087 7.5563 -3.5332 48 1 5.8377 3.9487 -0.0969 49 1 5.9133 4.0622 -1.8723 50 1 4.8266 1.8471 -2.0673 51 1 3.8117 2.9652 -1.1253 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000572793256.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:55 Heat of formation + Delta-G solvation = 68.899530 kcal Electronic energy + Delta-G solvation = -30067.014789 eV Core-core repulsion = 26003.448468 eV Total energy + Delta-G solvation = -4063.566321 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.62897 -39.82871 -38.58769 -36.73454 -35.04892 -33.25904 -32.63703 -31.94571 -31.63122 -31.04967 -29.66943 -27.35467 -26.29079 -25.20946 -23.83228 -23.37696 -21.17806 -20.95929 -20.54854 -20.20792 -19.79509 -19.34857 -17.70418 -17.52610 -16.69057 -16.10236 -15.63055 -15.55052 -14.97984 -14.90455 -14.62566 -14.40409 -14.10117 -14.04771 -13.86062 -13.78736 -13.49835 -13.24143 -13.10300 -12.99693 -12.68055 -12.59091 -12.30188 -11.85321 -11.67201 -11.55183 -11.39437 -11.05216 -10.98899 -10.93266 -10.85954 -10.56073 -10.50203 -10.23744 -10.21046 -9.68054 -9.42225 -9.00678 -8.96762 -8.80085 -8.46447 -8.38797 -8.20854 -7.95692 -6.05357 -4.14767 1.55965 2.37218 2.58167 3.21396 3.26169 3.35359 3.36984 3.53338 3.81687 4.34120 4.36582 4.52129 4.59041 4.71559 4.80047 4.87753 4.98946 5.00250 5.12308 5.18211 5.22698 5.30613 5.36884 5.38688 5.42539 5.49994 5.55562 5.63230 5.68210 5.78853 5.90489 6.01304 6.05776 6.11474 6.27510 6.37872 6.51155 6.55257 6.62585 6.73686 6.84292 6.89150 6.95711 7.09480 7.14867 7.36354 7.44807 7.49279 7.49686 7.65844 7.83450 8.36644 8.70172 8.86725 9.24036 9.52112 11.01878 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.018792 B = 0.001908 C = 0.001809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.662150 B =14670.363673 C =15477.287045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.097 3.903 3 C -0.272 4.272 4 C 0.262 3.738 5 N -0.451 5.451 6 C 0.065 3.935 7 C -0.125 4.125 8 C 0.165 3.835 9 N -0.749 5.749 10 C 0.698 3.302 11 O -0.604 6.604 12 N -0.721 5.721 13 C 0.183 3.817 14 C 0.023 3.977 15 C -0.497 4.497 16 H 0.060 0.940 17 C 0.072 3.928 18 N -0.874 5.874 19 Si 0.890 3.110 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.284 1.284 23 C -0.211 4.211 24 C -0.142 4.142 25 C -0.129 4.129 26 C 0.067 3.933 27 N -0.328 5.328 28 N -0.476 5.476 29 H 0.437 0.563 30 H 0.081 0.919 31 H 0.071 0.929 32 H 0.087 0.913 33 H 0.148 0.852 34 H 0.049 0.951 35 H 0.086 0.914 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.085 0.915 39 H 0.394 0.606 40 H 0.396 0.604 41 H 0.064 0.936 42 H 0.037 0.963 43 H 0.261 0.739 44 H 0.077 0.923 45 H 0.064 0.936 46 H 0.063 0.937 47 H 0.086 0.914 48 H 0.076 0.924 49 H 0.083 0.917 50 H 0.046 0.954 51 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.935 -18.333 8.549 27.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.032 4.032 3 C -0.303 4.303 4 C 0.005 3.995 5 N -0.173 5.173 6 C -0.062 4.062 7 C -0.164 4.164 8 C 0.059 3.941 9 N -0.405 5.405 10 C 0.398 3.602 11 O -0.484 6.484 12 N -0.373 5.373 13 C 0.059 3.941 14 C 0.022 3.978 15 C -0.535 4.535 16 H 0.078 0.922 17 C -0.132 4.132 18 N -0.511 5.511 19 Si 0.718 3.282 20 H -0.197 1.197 21 H -0.211 1.211 22 H -0.210 1.210 23 C -0.248 4.248 24 C -0.180 4.180 25 C -0.168 4.168 26 C -0.060 4.060 27 N -0.157 5.157 28 N -0.185 5.185 29 H 0.281 0.719 30 H 0.100 0.900 31 H 0.089 0.911 32 H 0.106 0.894 33 H 0.166 0.834 34 H 0.067 0.933 35 H 0.105 0.895 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.103 0.897 39 H 0.227 0.773 40 H 0.230 0.770 41 H 0.082 0.918 42 H 0.055 0.945 43 H 0.070 0.930 44 H 0.095 0.905 45 H 0.083 0.917 46 H 0.082 0.918 47 H 0.105 0.895 48 H 0.094 0.906 49 H 0.101 0.899 50 H 0.064 0.936 51 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -17.668 -19.072 7.754 27.130 hybrid contribution -0.499 0.915 0.758 1.289 sum -18.167 -18.157 8.512 27.059 Atomic orbital electron populations 1.20475 0.87171 1.04030 1.03524 1.21030 0.94577 0.87470 1.00159 1.20898 0.90513 0.99402 1.19489 1.20805 0.91821 0.89503 0.97402 1.59397 0.99611 1.16010 1.42273 1.22004 0.87289 0.94596 1.02340 1.21922 0.97635 0.97581 0.99246 1.20724 0.84968 0.89371 0.99040 1.45142 1.36736 1.49540 1.09033 1.16061 0.80445 0.79437 0.84245 1.90861 1.65041 1.68434 1.24076 1.45169 1.33949 1.46031 1.12199 1.20832 0.95664 0.92901 0.84683 1.19079 0.84810 0.95081 0.98826 1.20370 1.47222 0.93830 0.92034 0.92208 1.24999 0.94685 0.98543 0.94967 1.70004 1.47766 1.22530 1.10760 0.86574 0.78271 0.82205 0.81145 1.19749 1.21101 1.20957 1.23009 1.04466 0.95522 1.01802 1.22464 1.04711 0.99202 0.91641 1.22073 0.92937 0.98009 1.03823 1.22180 1.00269 0.93637 0.89906 1.77478 0.96495 1.11489 1.30287 1.45930 1.03500 1.07966 1.61144 0.71947 0.90033 0.91055 0.89407 0.83384 0.93312 0.89537 0.90278 0.90281 0.89740 0.77267 0.76998 0.91770 0.94478 0.92956 0.90457 0.91741 0.91816 0.89538 0.90571 0.89882 0.93564 0.89574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.34 10.43 36.01 0.38 0.04 16 2 C 0.10 0.73 7.20 -82.28 -0.59 0.14 16 3 C -0.27 -2.62 10.00 -39.82 -0.40 -3.02 16 4 C 0.26 3.01 6.59 -154.55 -1.02 1.99 16 5 N -0.45 -5.00 4.75 -172.80 -0.82 -5.83 16 6 C 0.07 0.68 4.89 -3.83 -0.02 0.67 16 7 C -0.13 -1.23 5.57 -26.65 -0.15 -1.38 16 8 C 0.17 2.07 2.52 -67.81 -0.17 1.90 16 9 N -0.75 -10.48 5.09 -58.56 -0.30 -10.78 16 10 C 0.70 13.20 8.54 -86.91 -0.74 12.46 16 11 O -0.60 -13.73 16.00 5.30 0.08 -13.64 16 12 N -0.72 -14.06 5.48 -65.23 -0.36 -14.42 16 13 C 0.18 4.19 5.50 -4.04 -0.02 4.17 16 14 C 0.02 0.54 1.47 -155.66 -0.23 0.31 16 15 C -0.50 -12.74 8.59 -34.44 -0.30 -13.04 16 16 H 0.06 1.51 7.82 -52.48 -0.41 1.10 16 17 C 0.07 1.91 5.43 -17.82 -0.10 1.81 16 18 N -0.87 -24.31 12.65 55.43 0.70 -23.61 16 19 Si 0.89 20.59 29.54 -169.99 -5.02 15.57 16 20 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 C -0.21 -4.42 9.96 -26.69 -0.27 -4.69 16 24 C -0.14 -3.28 9.14 -26.69 -0.24 -3.52 16 25 C -0.13 -1.57 5.67 -26.65 -0.15 -1.72 16 26 C 0.07 0.73 5.34 -3.83 -0.02 0.71 16 27 N -0.33 -3.79 11.73 31.41 0.37 -3.43 16 28 N -0.48 -3.92 7.35 33.47 0.25 -3.68 16 29 H 0.44 2.19 8.96 -182.62 -1.64 0.55 16 30 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.07 0.15 8.14 -51.93 -0.42 -0.27 16 32 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.15 1.23 7.91 -52.49 -0.41 0.82 16 34 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.09 0.90 7.93 -51.93 -0.41 0.49 16 36 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.08 1.24 7.57 -51.93 -0.39 0.85 16 39 H 0.39 4.50 8.62 -40.82 -0.35 4.15 16 40 H 0.40 7.03 8.35 -40.82 -0.34 6.69 16 41 H 0.06 1.68 8.14 -51.93 -0.42 1.26 16 42 H 0.04 0.85 8.09 -51.93 -0.42 0.43 16 43 H 0.26 6.95 8.32 -40.82 -0.34 6.61 16 44 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 45 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 46 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 47 H 0.09 2.13 8.14 -51.93 -0.42 1.71 16 48 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 49 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 50 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 51 H 0.09 0.84 7.44 -51.93 -0.39 0.46 16 LS Contribution 415.73 15.07 6.27 6.27 Total: -1.00 -32.68 415.73 -12.69 -45.37 By element: Atomic # 1 Polarization: 21.15 SS G_CDS: -9.82 Total: 11.33 kcal Atomic # 6 Polarization: 0.87 SS G_CDS: -4.04 Total: -3.16 kcal Atomic # 7 Polarization: -61.57 SS G_CDS: -0.16 Total: -61.73 kcal Atomic # 8 Polarization: -13.73 SS G_CDS: 0.08 Total: -13.64 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -32.68 -12.69 -45.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572793256.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.268 kcal (2) G-P(sol) polarization free energy of solvation -32.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds