Wall clock time and date at job start Wed Apr 1 2020 04:54:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35243 * 126.06937 * 2 1 4 4 C 1.40429 * 107.86058 * 180.02562 * 3 2 1 5 5 N 1.39991 * 125.97337 * 179.97438 * 4 3 2 6 6 C 1.46846 * 110.99767 * 180.02562 * 5 4 3 7 7 C 1.53036 * 109.52387 * 185.83900 * 6 5 4 8 8 C 1.53119 * 109.28230 * 300.82481 * 7 6 5 9 9 N 1.46497 * 109.52620 * 177.55730 * 8 7 6 10 10 C 1.34780 * 119.99719 * 154.99552 * 9 8 7 11 11 O 1.21578 * 120.00108 * 359.97438 * 10 9 8 12 12 N 1.34777 * 119.99704 * 179.97438 * 10 9 8 13 13 C 1.46498 * 119.99966 * 180.02562 * 12 10 9 14 14 C 1.53006 * 109.46847 * 184.79711 * 13 12 10 15 15 C 1.50694 * 115.55031 * 294.81434 * 14 13 12 16 16 H 1.08008 * 119.99906 * 95.20931 * 15 14 13 17 17 C 1.37882 * 120.00284 * 274.93190 * 15 14 13 18 18 N 1.31518 * 119.99808 * 355.41947 * 17 15 14 19 19 Si 1.86800 * 120.00242 * 175.41794 * 17 15 14 20 20 H 1.48502 * 109.47002 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.47091 * 119.99801 * 19 17 15 22 22 H 1.48497 * 109.47138 * 240.00628 * 19 17 15 23 23 C 1.53003 * 117.49932 * 80.48760 * 14 13 12 24 24 C 1.52998 * 117.49502 * 149.14904 * 14 13 12 25 25 C 1.53114 * 109.16068 * 57.64762 * 8 7 6 26 26 C 1.46851 * 111.00199 * 304.21022 * 5 4 3 27 27 N 1.31221 * 108.04981 * 0.24233 * 4 3 2 28 28 N 1.34963 * 126.06649 * 180.02562 * 2 1 3 29 29 H 0.97000 * 125.97273 * 0.02562 * 28 2 1 30 30 H 1.09004 * 109.47203 * 89.99622 * 1 2 3 31 31 H 1.08993 * 109.47255 * 209.99749 * 1 2 3 32 32 H 1.09000 * 109.46784 * 330.00121 * 1 2 3 33 33 H 1.07999 * 126.06876 * 0.04278 * 3 2 1 34 34 H 1.09005 * 109.46727 * 65.82497 * 6 5 4 35 35 H 1.09005 * 109.46429 * 305.85506 * 6 5 4 36 36 H 1.09005 * 109.50717 * 180.87846 * 7 6 5 37 37 H 1.09002 * 109.50194 * 60.76246 * 7 6 5 38 38 H 1.09004 * 109.51769 * 297.68319 * 8 7 6 39 39 H 0.96996 * 119.99936 * 334.99838 * 9 8 7 40 40 H 0.97009 * 119.99753 * 0.02562 * 12 10 9 41 41 H 1.08993 * 109.47219 * 64.80231 * 13 12 10 42 42 H 1.09000 * 109.47241 * 304.79395 * 13 12 10 43 43 H 0.97001 * 119.99858 * 184.99726 * 18 17 15 44 44 H 1.08997 * 117.49622 * 214.99831 * 23 14 13 45 45 H 1.09000 * 117.49928 * 0.02562 * 23 14 13 46 46 H 1.08996 * 117.50254 * 359.97148 * 24 14 13 47 47 H 1.09005 * 117.49689 * 144.97447 * 24 14 13 48 48 H 1.08997 * 109.50499 * 62.29254 * 25 8 7 49 49 H 1.09003 * 109.50569 * 182.40832 * 25 8 7 50 50 H 1.08996 * 109.45792 * 294.17520 * 26 5 4 51 51 H 1.08997 * 109.46150 * 54.14426 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3033 1.0932 0.0000 4 6 3.6372 0.6544 -0.0006 5 7 4.7724 1.4736 -0.0013 6 6 6.0014 0.6699 -0.0024 7 6 7.2149 1.5908 0.1436 8 6 7.2346 2.5891 -1.0172 9 7 8.3612 3.5107 -0.8514 10 6 8.8937 4.1244 -1.9268 11 8 8.4393 3.9128 -3.0344 12 7 9.9299 4.9726 -1.7741 13 6 10.5083 5.6401 -2.9429 14 6 11.7353 6.4474 -2.5138 15 6 11.4611 7.6032 -1.5866 16 1 11.5588 7.4738 -0.5187 17 6 11.0910 8.8275 -2.1017 18 7 11.0646 9.0124 -3.4035 19 14 10.6271 10.2236 -0.9504 20 1 10.7379 9.7623 0.4568 21 1 11.5447 11.3706 -1.1685 22 1 9.2306 10.6476 -1.2242 23 6 13.0504 5.6881 -2.3267 24 6 12.8644 6.6119 -3.5331 25 6 5.9233 3.3796 -1.0226 26 6 4.7475 2.4064 -1.1352 27 7 3.6336 -0.6578 -0.0062 28 7 2.3015 -1.0910 -0.0005 29 1 2.0024 -2.0137 -0.0013 30 1 -0.3634 0.0001 -1.0277 31 1 -0.3633 -0.8899 0.5138 32 1 -0.3633 0.8900 0.5138 33 1 1.9720 2.1211 0.0007 34 1 6.0743 0.1190 -0.9402 35 1 5.9765 -0.0329 0.8305 36 1 8.1278 0.9953 0.1271 37 1 7.1497 2.1318 1.0876 38 1 7.3401 2.0504 -1.9590 39 1 8.7240 3.6791 0.0323 40 1 10.2926 5.1411 -0.8903 41 1 9.7687 6.3094 -3.3822 42 1 10.8045 4.8925 -3.6788 43 1 10.8751 9.8925 -3.7646 44 1 13.7172 6.0247 -1.5329 45 1 13.0416 4.6136 -2.5096 46 1 12.7334 6.1446 -4.5091 47 1 13.4087 7.5563 -3.5332 48 1 5.8377 3.9487 -0.0969 49 1 5.9133 4.0622 -1.8723 50 1 4.8266 1.8471 -2.0673 51 1 3.8117 2.9652 -1.1253 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000572793256.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:54 Heat of formation + Delta-G solvation = 46.701795 kcal Electronic energy + Delta-G solvation = -30067.977355 eV Core-core repulsion = 26003.448468 eV Total energy + Delta-G solvation = -4064.528887 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.34239 -41.14979 -39.72421 -38.47862 -36.19305 -34.93188 -33.93878 -33.39638 -32.50306 -31.91405 -30.56369 -28.06533 -27.87814 -27.03416 -24.94818 -24.26371 -22.92535 -21.88309 -21.62228 -21.27106 -21.20200 -20.73941 -19.12184 -18.24588 -18.13709 -17.46502 -16.88828 -16.66381 -16.40641 -16.18055 -15.79186 -15.77217 -15.52276 -15.09573 -14.88850 -14.80985 -14.58913 -14.42712 -14.20474 -13.81307 -13.69389 -13.53129 -13.42826 -13.26229 -13.00067 -12.89872 -12.84656 -12.59224 -12.31026 -12.28775 -12.00427 -11.99699 -11.75593 -11.47404 -11.42537 -11.20056 -10.99094 -10.91566 -10.42533 -10.22443 -10.00575 -9.65609 -9.56748 -9.18180 -8.06750 -6.20536 0.89457 1.42690 1.46620 1.55530 1.65504 1.82980 1.94233 2.28369 2.44354 2.78250 3.21312 3.33929 3.61887 3.67987 3.73046 3.86996 3.96969 4.08859 4.20233 4.27346 4.30190 4.36506 4.45485 4.52027 4.58635 4.61315 4.68780 4.74545 4.77184 4.77903 4.81475 4.84021 4.96607 5.01352 5.04731 5.10954 5.13055 5.18552 5.24283 5.31336 5.34268 5.58338 5.62682 5.66137 5.73331 5.76507 5.81764 6.18471 6.22326 6.39659 6.50303 6.76859 6.87124 7.29023 7.48851 7.73226 9.00500 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.018792 B = 0.001908 C = 0.001809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.662150 B =14670.363673 C =15477.287045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.111 3.889 3 C -0.299 4.299 4 C 0.243 3.757 5 N -0.452 5.452 6 C 0.070 3.930 7 C -0.111 4.111 8 C 0.164 3.836 9 N -0.727 5.727 10 C 0.697 3.303 11 O -0.645 6.645 12 N -0.716 5.716 13 C 0.201 3.799 14 C 0.001 3.999 15 C -0.499 4.499 16 H 0.065 0.935 17 C 0.021 3.979 18 N -0.909 5.909 19 Si 0.950 3.050 20 H -0.260 1.260 21 H -0.285 1.285 22 H -0.290 1.290 23 C -0.176 4.176 24 C -0.154 4.154 25 C -0.122 4.122 26 C 0.076 3.924 27 N -0.361 5.361 28 N -0.469 5.469 29 H 0.449 0.551 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.097 0.903 33 H 0.156 0.844 34 H 0.036 0.964 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.061 0.939 39 H 0.411 0.589 40 H 0.407 0.593 41 H 0.022 0.978 42 H 0.033 0.967 43 H 0.258 0.742 44 H 0.086 0.914 45 H 0.087 0.913 46 H 0.068 0.932 47 H 0.065 0.935 48 H 0.085 0.915 49 H 0.056 0.944 50 H 0.033 0.967 51 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.028 -19.545 11.005 29.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.019 4.019 3 C -0.329 4.329 4 C -0.014 4.014 5 N -0.174 5.174 6 C -0.058 4.058 7 C -0.149 4.149 8 C 0.059 3.941 9 N -0.383 5.383 10 C 0.397 3.603 11 O -0.528 6.528 12 N -0.369 5.369 13 C 0.076 3.924 14 C 0.000 4.000 15 C -0.536 4.536 16 H 0.083 0.917 17 C -0.179 4.179 18 N -0.546 5.546 19 Si 0.777 3.223 20 H -0.184 1.184 21 H -0.211 1.211 22 H -0.216 1.216 23 C -0.213 4.213 24 C -0.192 4.192 25 C -0.161 4.161 26 C -0.052 4.052 27 N -0.191 5.191 28 N -0.181 5.181 29 H 0.296 0.704 30 H 0.112 0.888 31 H 0.109 0.891 32 H 0.116 0.884 33 H 0.174 0.826 34 H 0.055 0.945 35 H 0.108 0.892 36 H 0.111 0.889 37 H 0.112 0.888 38 H 0.079 0.921 39 H 0.247 0.753 40 H 0.243 0.757 41 H 0.040 0.960 42 H 0.051 0.949 43 H 0.067 0.933 44 H 0.104 0.896 45 H 0.105 0.895 46 H 0.086 0.914 47 H 0.084 0.916 48 H 0.103 0.897 49 H 0.075 0.925 50 H 0.052 0.948 51 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -18.760 -20.323 10.286 29.509 hybrid contribution -0.242 1.191 -0.014 1.215 sum -19.002 -19.132 10.272 28.855 Atomic orbital electron populations 1.20626 0.84062 1.05493 1.04718 1.21605 0.96269 0.86498 0.97545 1.21154 0.90156 1.00576 1.21027 1.21020 0.92471 0.89753 0.98125 1.59419 0.99893 1.16191 1.41901 1.21961 0.87403 0.94615 1.01820 1.21832 0.97989 0.96814 0.98286 1.20826 0.84466 0.89468 0.99366 1.44961 1.36364 1.48440 1.08555 1.16198 0.80124 0.79339 0.84647 1.90837 1.66117 1.69689 1.26161 1.44927 1.34275 1.46006 1.11738 1.20369 0.94395 0.92010 0.85631 1.19116 0.85807 0.95749 0.99336 1.20676 1.46099 0.94324 0.92546 0.91694 1.25732 0.94998 1.01046 0.96150 1.70129 1.49304 1.22819 1.12377 0.85625 0.77312 0.79436 0.79956 1.18381 1.21121 1.21602 1.22988 1.01873 0.96248 1.00181 1.22388 1.04895 0.99207 0.92731 1.21952 0.93265 0.97847 1.03022 1.22062 1.00151 0.93382 0.89562 1.77379 0.98510 1.11740 1.31443 1.45989 1.02691 1.09010 1.60400 0.70400 0.88798 0.89106 0.88437 0.82597 0.94536 0.89216 0.88949 0.88832 0.92107 0.75260 0.75726 0.95988 0.94856 0.93293 0.89583 0.89502 0.91363 0.91648 0.89670 0.92490 0.94820 0.88441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.39 10.43 71.24 0.74 0.35 16 2 C 0.11 1.48 7.20 41.39 0.30 1.78 16 3 C -0.30 -5.43 10.00 22.11 0.22 -5.21 16 4 C 0.24 5.45 6.59 133.39 0.88 6.33 16 5 N -0.45 -9.78 4.75 -700.63 -3.33 -13.11 16 6 C 0.07 1.41 4.89 86.33 0.42 1.83 16 7 C -0.11 -2.00 5.57 30.65 0.17 -1.83 16 8 C 0.16 4.04 2.52 45.07 0.11 4.16 16 9 N -0.73 -19.59 5.09 -457.44 -2.33 -21.92 16 10 C 0.70 26.32 8.54 179.05 1.53 27.85 16 11 O -0.65 -30.07 16.00 -3.96 -0.06 -30.14 16 12 N -0.72 -27.61 5.48 -478.54 -2.62 -30.24 16 13 C 0.20 9.35 5.50 86.38 0.48 9.82 16 14 C 0.00 0.03 1.47 -52.93 -0.08 -0.04 16 15 C -0.50 -25.33 8.59 25.60 0.22 -25.11 16 16 H 0.06 3.17 7.82 -2.91 -0.02 3.14 16 17 C 0.02 1.12 5.43 84.66 0.46 1.58 16 18 N -0.91 -51.60 12.65 21.45 0.27 -51.33 16 19 Si 0.95 42.27 29.54 68.60 2.03 44.30 16 20 H -0.26 -10.90 7.11 99.48 0.71 -10.20 16 21 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 22 H -0.29 -13.07 7.11 99.48 0.71 -12.37 16 23 C -0.18 -7.04 9.96 30.62 0.30 -6.74 16 24 C -0.15 -7.12 9.14 30.62 0.28 -6.84 16 25 C -0.12 -2.94 5.67 30.65 0.17 -2.77 16 26 C 0.08 1.65 5.34 86.33 0.46 2.11 16 27 N -0.36 -8.14 11.73 -54.54 -0.64 -8.78 16 28 N -0.47 -7.10 7.35 -48.04 -0.35 -7.45 16 29 H 0.45 3.78 8.96 -213.34 -1.91 1.87 16 30 H 0.09 0.25 8.14 -2.39 -0.02 0.23 16 31 H 0.09 0.08 8.14 -2.39 -0.02 0.06 16 32 H 0.10 0.29 8.14 -2.39 -0.02 0.27 16 33 H 0.16 2.43 7.91 -2.91 -0.02 2.40 16 34 H 0.04 0.82 8.14 -2.38 -0.02 0.81 16 35 H 0.09 1.79 7.93 -2.38 -0.02 1.77 16 36 H 0.09 1.46 8.14 -2.38 -0.02 1.44 16 37 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.06 1.83 7.57 -2.38 -0.02 1.81 16 39 H 0.41 8.45 8.62 -92.71 -0.80 7.65 16 40 H 0.41 13.83 8.35 -92.70 -0.77 13.05 16 41 H 0.02 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.03 1.55 8.09 -2.39 -0.02 1.53 16 43 H 0.26 14.12 8.32 -92.71 -0.77 13.35 16 44 H 0.09 3.31 8.14 -2.39 -0.02 3.29 16 45 H 0.09 3.11 8.14 -2.39 -0.02 3.09 16 46 H 0.07 3.04 8.14 -2.39 -0.02 3.02 16 47 H 0.06 3.28 8.14 -2.38 -0.02 3.26 16 48 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 49 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 50 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 51 H 0.10 1.88 7.44 -2.39 -0.02 1.86 16 Total: -1.00 -72.05 415.73 -2.89 -74.95 By element: Atomic # 1 Polarization: 38.96 SS G_CDS: -2.53 Total: 36.43 kcal Atomic # 6 Polarization: 0.61 SS G_CDS: 6.67 Total: 7.28 kcal Atomic # 7 Polarization: -123.81 SS G_CDS: -9.00 Total: -132.82 kcal Atomic # 8 Polarization: -30.07 SS G_CDS: -0.06 Total: -30.14 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.30 kcal Total: -72.05 -2.89 -74.95 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572793256.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.651 kcal (2) G-P(sol) polarization free energy of solvation -72.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.950 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds