Wall clock time and date at job start Wed Apr 1 2020 05:15:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.33473 * 125.49754 * 2 1 4 4 C 1.30332 * 109.72446 * 180.24213 * 3 2 1 5 5 N 1.34672 * 108.04548 * 0.04805 * 4 3 2 6 6 N 1.30979 * 125.49857 * 180.31233 * 2 1 3 7 7 C 1.46302 * 125.04518 * 179.97438 * 5 4 3 8 8 C 1.53298 * 108.77625 * 342.99506 * 7 5 4 9 9 C 1.53162 * 109.49447 * 50.11375 * 8 7 5 10 10 C 1.50921 * 127.89726 * 180.10267 * 4 3 2 11 11 H 1.09008 * 109.72147 * 283.64592 * 10 4 3 12 12 N 1.46495 * 109.72177 * 44.29384 * 10 4 3 13 13 C 1.34773 * 120.00403 * 274.99888 * 12 10 4 14 14 O 1.21589 * 119.99672 * 355.00386 * 13 12 10 15 15 N 1.34780 * 120.00063 * 174.99799 * 13 12 10 16 16 C 1.46921 * 120.63102 * 4.94562 * 15 13 12 17 17 C 1.53627 * 108.54259 * 126.36510 * 16 15 13 18 18 C 1.53040 * 109.24125 * 54.86012 * 17 16 15 19 19 C 1.52996 * 109.44767 * 178.49567 * 18 17 16 20 20 C 1.50693 * 109.47337 * 295.05502 * 19 18 17 21 21 H 1.08003 * 120.00199 * 0.02562 * 20 19 18 22 22 C 1.37875 * 120.00164 * 179.97438 * 20 19 18 23 23 N 1.31510 * 120.00090 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00217 * 180.02562 * 22 20 19 25 25 H 1.48505 * 109.47000 * 90.00247 * 24 22 20 26 26 H 1.48496 * 109.47364 * 210.00405 * 24 22 20 27 27 H 1.48502 * 109.47308 * 330.00481 * 24 22 20 28 28 C 1.53041 * 109.53337 * 298.50853 * 18 17 16 29 29 C 1.46929 * 120.62980 * 185.22356 * 15 13 12 30 30 H 1.08997 * 109.47396 * 269.71278 * 1 2 3 31 31 H 1.09007 * 109.47360 * 29.71256 * 1 2 3 32 32 H 1.09000 * 109.47500 * 149.71113 * 1 2 3 33 33 H 1.09007 * 109.58319 * 102.78665 * 7 5 4 34 34 H 1.08999 * 109.58743 * 223.20695 * 7 5 4 35 35 H 1.08996 * 109.47108 * 290.10461 * 8 7 5 36 36 H 1.09001 * 109.46488 * 170.11851 * 8 7 5 37 37 H 1.08996 * 109.51201 * 170.88811 * 9 8 7 38 38 H 1.09003 * 109.50648 * 50.75174 * 9 8 7 39 39 H 0.97007 * 119.99489 * 95.00349 * 12 10 4 40 40 H 1.09000 * 109.58687 * 246.20175 * 16 15 13 41 41 H 1.08999 * 109.58737 * 6.62356 * 16 15 13 42 42 H 1.08994 * 109.63527 * 294.86205 * 17 16 15 43 43 H 1.09006 * 109.42896 * 174.72278 * 17 16 15 44 44 H 1.09000 * 109.46223 * 58.52697 * 18 17 16 45 45 H 1.08998 * 109.47054 * 55.06246 * 19 18 17 46 46 H 1.09010 * 109.46893 * 175.05625 * 19 18 17 47 47 H 0.97002 * 120.00442 * 179.97438 * 23 22 20 48 48 H 1.09004 * 109.50106 * 301.41106 * 28 18 17 49 49 H 1.09007 * 109.49606 * 181.31644 * 28 18 17 50 50 H 1.09007 * 109.58671 * 353.37226 * 29 15 13 51 51 H 1.08998 * 109.58607 * 113.80087 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2820 1.0867 0.0000 4 6 3.5362 0.7324 -0.0052 5 7 3.5896 -0.6133 -0.0097 6 7 2.2675 -1.0663 -0.0058 7 6 4.8197 -1.4052 -0.0168 8 6 5.9844 -0.5039 -0.4426 9 6 5.9688 0.7800 0.3924 10 6 4.7521 1.6265 -0.0050 11 1 4.9021 2.0436 -1.0009 12 7 4.5684 2.7105 0.9631 13 6 3.9089 3.8298 0.6045 14 8 3.5458 3.9791 -0.5463 15 7 3.6517 4.7835 1.5215 16 6 4.1767 4.6682 2.8888 17 6 4.9474 5.9536 3.2262 18 6 4.0350 7.1619 3.0035 19 6 4.7860 8.4424 3.3740 20 6 5.0900 8.4373 4.8499 21 1 4.7791 7.6039 5.4625 22 6 5.7660 9.4961 5.4182 23 7 6.1450 10.5107 4.6723 24 14 6.1435 9.4895 7.2477 25 1 7.4618 8.8461 7.4787 26 1 6.1792 10.8861 7.7508 27 1 5.0895 8.7307 7.9679 28 6 3.6171 7.2233 1.5325 29 6 2.8360 5.9552 1.1744 30 1 -0.3634 -0.0052 1.0276 31 1 -0.3634 0.8926 -0.5094 32 1 -0.3634 -0.8874 -0.5183 33 1 5.0076 -1.7974 0.9828 34 1 4.7192 -2.2301 -0.7222 35 1 5.8818 -0.2521 -1.4981 36 1 6.9265 -1.0288 -0.2844 37 1 6.8818 1.3458 0.2071 38 1 5.9060 0.5254 1.4504 39 1 4.9217 2.6227 1.8623 40 1 3.3502 4.5402 3.5879 41 1 4.8472 3.8112 2.9518 42 1 5.8231 6.0353 2.5824 43 1 5.2635 5.9237 4.2690 44 1 3.1477 7.0673 3.6294 45 1 5.7180 8.4928 2.8111 46 1 4.1688 9.3081 3.1331 47 1 6.6202 11.2559 5.0722 48 1 4.5053 7.2931 0.9045 49 1 2.9863 8.0973 1.3697 50 1 2.6217 5.9476 0.1056 51 1 1.9025 5.9300 1.7365 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591973333.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:15:01 Heat of formation + Delta-G solvation = 48.767841 kcal Electronic energy + Delta-G solvation = -31222.016025 eV Core-core repulsion = 27157.576728 eV Total energy + Delta-G solvation = -4064.439297 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.53989 -40.21022 -37.98891 -37.09066 -34.87743 -33.96554 -32.47396 -32.15826 -31.68154 -30.58040 -29.27814 -28.33425 -27.71528 -24.81419 -23.96314 -23.19985 -22.81288 -21.78427 -20.83277 -20.07891 -20.02473 -19.10127 -17.85225 -17.10213 -16.76713 -16.28951 -16.07524 -15.56605 -15.14491 -14.84747 -14.64886 -14.54737 -14.47436 -13.91901 -13.64471 -13.42005 -13.35432 -13.11349 -12.96598 -12.80181 -12.77083 -12.64691 -12.30540 -12.10585 -12.01557 -11.78075 -11.74567 -11.40171 -11.17689 -10.95971 -10.80157 -10.67239 -10.46107 -10.09941 -10.03881 -9.93980 -9.83495 -9.61900 -9.47765 -9.35834 -9.23623 -8.95182 -8.35928 -8.19326 -6.00195 -4.02190 1.37104 2.00762 2.56984 2.90670 3.29534 3.33092 3.36802 3.39060 3.70129 3.82174 3.90680 4.06296 4.24646 4.44437 4.47157 4.56087 4.70691 4.81361 4.97767 5.10466 5.12106 5.15441 5.32874 5.34695 5.36913 5.39604 5.50282 5.51551 5.56178 5.59471 5.60643 5.72260 5.79346 6.05961 6.16358 6.17808 6.30722 6.31895 6.37965 6.45041 6.53414 6.58098 6.67893 6.98250 7.01996 7.10751 7.13067 7.67640 7.82729 8.00002 8.02309 8.05260 8.42315 8.75652 9.04514 9.61509 11.11023 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.016935 B = 0.002276 C = 0.002181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.959399 B =12301.266849 C =12835.060159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.214 3.786 3 N -0.508 5.508 4 C 0.264 3.736 5 N -0.379 5.379 6 N -0.320 5.320 7 C 0.126 3.874 8 C -0.133 4.133 9 C -0.135 4.135 10 C 0.248 3.752 11 H 0.121 0.879 12 N -0.737 5.737 13 C 0.718 3.282 14 O -0.581 6.581 15 N -0.620 5.620 16 C 0.111 3.889 17 C -0.117 4.117 18 C -0.080 4.080 19 C 0.027 3.973 20 C -0.516 4.516 21 H 0.055 0.945 22 C 0.056 3.944 23 N -0.895 5.895 24 Si 0.888 3.112 25 H -0.282 1.282 26 H -0.287 1.287 27 H -0.274 1.274 28 C -0.130 4.130 29 C 0.132 3.868 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.088 0.912 34 H 0.096 0.904 35 H 0.083 0.917 36 H 0.104 0.896 37 H 0.099 0.901 38 H 0.080 0.920 39 H 0.398 0.602 40 H 0.065 0.935 41 H 0.064 0.936 42 H 0.059 0.941 43 H 0.082 0.918 44 H 0.058 0.942 45 H 0.015 0.985 46 H 0.016 0.984 47 H 0.260 0.740 48 H 0.060 0.940 49 H 0.070 0.930 50 H 0.087 0.913 51 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.775 -24.922 -9.357 26.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.068 4.068 3 N -0.234 5.234 4 C -0.015 4.015 5 N -0.171 5.171 6 N -0.149 5.149 7 C 0.004 3.996 8 C -0.171 4.171 9 C -0.173 4.173 10 C 0.138 3.862 11 H 0.139 0.861 12 N -0.395 5.395 13 C 0.420 3.580 14 O -0.458 6.458 15 N -0.357 5.357 16 C -0.012 4.012 17 C -0.155 4.155 18 C -0.098 4.098 19 C -0.010 4.010 20 C -0.554 4.554 21 H 0.074 0.926 22 C -0.145 4.145 23 N -0.535 5.535 24 Si 0.716 3.284 25 H -0.208 1.208 26 H -0.213 1.213 27 H -0.199 1.199 28 C -0.168 4.168 29 C 0.009 3.991 30 H 0.100 0.900 31 H 0.105 0.895 32 H 0.098 0.902 33 H 0.106 0.894 34 H 0.114 0.886 35 H 0.101 0.899 36 H 0.122 0.878 37 H 0.117 0.883 38 H 0.098 0.902 39 H 0.236 0.764 40 H 0.084 0.916 41 H 0.082 0.918 42 H 0.077 0.923 43 H 0.101 0.899 44 H 0.076 0.924 45 H 0.033 0.967 46 H 0.034 0.966 47 H 0.069 0.931 48 H 0.079 0.921 49 H 0.088 0.912 50 H 0.105 0.895 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.329 -25.077 -10.189 27.168 hybrid contribution 0.698 -0.033 1.649 1.791 sum -1.631 -25.110 -8.539 26.572 Atomic orbital electron populations 1.20066 0.84004 1.03925 1.03594 1.24484 0.98317 0.85581 0.98401 1.70294 0.99798 1.30133 1.23209 1.24958 0.95758 0.83632 0.97175 1.50312 1.05635 1.05683 1.55511 1.77873 0.86746 1.22559 1.27716 1.21880 0.79554 0.94429 1.03719 1.21961 0.98150 0.95579 1.01453 1.22041 0.98016 0.96003 1.01287 1.19261 0.86438 0.84332 0.96149 0.86130 1.45070 1.62322 1.16370 1.15765 1.15643 0.78206 0.79525 0.84668 1.90892 1.57803 1.79462 1.17681 1.47275 1.55047 1.22479 1.10863 1.21862 0.97694 0.98964 0.82718 1.21970 0.98103 0.92838 1.02625 1.21170 0.98210 0.97137 0.93310 1.19124 0.94981 0.90774 0.96074 1.21239 1.35924 1.04298 0.93927 0.92643 1.25024 0.96049 0.95697 0.97728 1.69962 1.39595 1.08505 1.35389 0.86657 0.78620 0.77210 0.85867 1.20782 1.21311 1.19925 1.22046 1.00152 0.96126 0.98486 1.21535 0.92482 0.83487 1.01567 0.90013 0.89497 0.90217 0.89379 0.88570 0.89881 0.87772 0.88283 0.90161 0.76414 0.91646 0.91821 0.92261 0.89906 0.92386 0.96670 0.96572 0.93060 0.92088 0.91179 0.89504 0.92119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.55 10.51 36.00 0.38 -0.17 16 2 C 0.21 2.91 8.15 -156.43 -1.27 1.64 16 3 N -0.51 -7.79 11.16 -8.03 -0.09 -7.88 16 4 C 0.26 3.32 7.28 -155.78 -1.13 2.19 16 5 N -0.38 -4.17 4.04 -58.29 -0.24 -4.41 16 6 N -0.32 -4.23 12.74 32.50 0.41 -3.82 16 7 C 0.13 0.75 7.30 -3.99 -0.03 0.72 16 8 C -0.13 -0.50 5.95 -26.49 -0.16 -0.66 16 9 C -0.13 -0.72 5.45 -26.41 -0.14 -0.86 16 10 C 0.25 2.51 2.88 -68.74 -0.20 2.31 16 11 H 0.12 1.36 7.55 -51.92 -0.39 0.97 16 12 N -0.74 -8.60 5.00 -59.47 -0.30 -8.89 16 13 C 0.72 11.20 8.24 -86.92 -0.72 10.49 16 14 O -0.58 -11.03 15.41 5.29 0.08 -10.95 16 15 N -0.62 -9.40 2.97 -178.23 -0.53 -9.93 16 16 C 0.11 1.50 6.42 -3.49 -0.02 1.48 16 17 C -0.12 -1.97 5.21 -26.39 -0.14 -2.11 16 18 C -0.08 -1.53 2.10 -90.58 -0.19 -1.72 16 19 C 0.03 0.68 4.45 -27.89 -0.12 0.55 16 20 C -0.52 -13.83 8.39 -34.44 -0.29 -14.12 16 21 H 0.06 1.43 7.06 -52.48 -0.37 1.06 16 22 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 23 N -0.90 -26.44 13.29 55.43 0.74 -25.71 16 24 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 25 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 26 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 27 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 28 C -0.13 -2.21 5.36 -26.61 -0.14 -2.36 16 29 C 0.13 2.07 6.44 -3.71 -0.02 2.04 16 30 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.08 0.34 8.12 -51.93 -0.42 -0.08 16 36 H 0.10 0.12 8.14 -51.93 -0.42 -0.30 16 37 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.08 0.38 8.10 -51.93 -0.42 -0.04 16 39 H 0.40 3.79 6.07 -40.82 -0.25 3.54 16 40 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 41 H 0.06 0.68 5.64 -51.93 -0.29 0.39 16 42 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.08 1.47 6.91 -51.93 -0.36 1.11 16 44 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 45 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.02 0.43 8.14 -51.92 -0.42 0.00 16 47 H 0.26 7.27 8.31 -40.82 -0.34 6.94 16 48 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 49 H 0.07 1.16 8.14 -51.92 -0.42 0.74 16 50 H 0.09 1.42 7.00 -51.93 -0.36 1.06 16 51 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 LS Contribution 401.90 15.07 6.06 6.06 Total: -1.00 -36.46 401.90 -11.53 -47.99 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -8.34 Total: 0.59 kcal Atomic # 6 Polarization: 5.19 SS G_CDS: -4.30 Total: 0.89 kcal Atomic # 7 Polarization: -60.63 SS G_CDS: 0.00 Total: -60.63 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: 0.08 Total: -10.95 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -36.46 -11.53 -47.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591973333.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.756 kcal (2) G-P(sol) polarization free energy of solvation -36.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds