Wall clock time and date at job start Wed Apr 1 2020 05:15:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.33473 * 125.49754 * 2 1 4 4 C 1.30332 * 109.72446 * 180.24213 * 3 2 1 5 5 N 1.34672 * 108.04548 * 0.04805 * 4 3 2 6 6 N 1.30979 * 125.49857 * 180.31233 * 2 1 3 7 7 C 1.46302 * 125.04518 * 179.97438 * 5 4 3 8 8 C 1.53298 * 108.77625 * 342.99506 * 7 5 4 9 9 C 1.53162 * 109.49447 * 50.11375 * 8 7 5 10 10 C 1.50921 * 127.89726 * 180.10267 * 4 3 2 11 11 H 1.09008 * 109.72147 * 283.64592 * 10 4 3 12 12 N 1.46495 * 109.72177 * 44.29384 * 10 4 3 13 13 C 1.34773 * 120.00403 * 274.99888 * 12 10 4 14 14 O 1.21589 * 119.99672 * 355.00386 * 13 12 10 15 15 N 1.34780 * 120.00063 * 174.99799 * 13 12 10 16 16 C 1.46921 * 120.63102 * 4.94562 * 15 13 12 17 17 C 1.53627 * 108.54259 * 126.36510 * 16 15 13 18 18 C 1.53040 * 109.24125 * 54.86012 * 17 16 15 19 19 C 1.52996 * 109.44767 * 178.49567 * 18 17 16 20 20 C 1.50693 * 109.47337 * 295.05502 * 19 18 17 21 21 H 1.08003 * 120.00199 * 0.02562 * 20 19 18 22 22 C 1.37875 * 120.00164 * 179.97438 * 20 19 18 23 23 N 1.31510 * 120.00090 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00217 * 180.02562 * 22 20 19 25 25 H 1.48505 * 109.47000 * 90.00247 * 24 22 20 26 26 H 1.48496 * 109.47364 * 210.00405 * 24 22 20 27 27 H 1.48502 * 109.47308 * 330.00481 * 24 22 20 28 28 C 1.53041 * 109.53337 * 298.50853 * 18 17 16 29 29 C 1.46929 * 120.62980 * 185.22356 * 15 13 12 30 30 H 1.08997 * 109.47396 * 269.71278 * 1 2 3 31 31 H 1.09007 * 109.47360 * 29.71256 * 1 2 3 32 32 H 1.09000 * 109.47500 * 149.71113 * 1 2 3 33 33 H 1.09007 * 109.58319 * 102.78665 * 7 5 4 34 34 H 1.08999 * 109.58743 * 223.20695 * 7 5 4 35 35 H 1.08996 * 109.47108 * 290.10461 * 8 7 5 36 36 H 1.09001 * 109.46488 * 170.11851 * 8 7 5 37 37 H 1.08996 * 109.51201 * 170.88811 * 9 8 7 38 38 H 1.09003 * 109.50648 * 50.75174 * 9 8 7 39 39 H 0.97007 * 119.99489 * 95.00349 * 12 10 4 40 40 H 1.09000 * 109.58687 * 246.20175 * 16 15 13 41 41 H 1.08999 * 109.58737 * 6.62356 * 16 15 13 42 42 H 1.08994 * 109.63527 * 294.86205 * 17 16 15 43 43 H 1.09006 * 109.42896 * 174.72278 * 17 16 15 44 44 H 1.09000 * 109.46223 * 58.52697 * 18 17 16 45 45 H 1.08998 * 109.47054 * 55.06246 * 19 18 17 46 46 H 1.09010 * 109.46893 * 175.05625 * 19 18 17 47 47 H 0.97002 * 120.00442 * 179.97438 * 23 22 20 48 48 H 1.09004 * 109.50106 * 301.41106 * 28 18 17 49 49 H 1.09007 * 109.49606 * 181.31644 * 28 18 17 50 50 H 1.09007 * 109.58671 * 353.37226 * 29 15 13 51 51 H 1.08998 * 109.58607 * 113.80087 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2820 1.0867 0.0000 4 6 3.5362 0.7324 -0.0052 5 7 3.5896 -0.6133 -0.0097 6 7 2.2675 -1.0663 -0.0058 7 6 4.8197 -1.4052 -0.0168 8 6 5.9844 -0.5039 -0.4426 9 6 5.9688 0.7800 0.3924 10 6 4.7521 1.6265 -0.0050 11 1 4.9021 2.0436 -1.0009 12 7 4.5684 2.7105 0.9631 13 6 3.9089 3.8298 0.6045 14 8 3.5458 3.9791 -0.5463 15 7 3.6517 4.7835 1.5215 16 6 4.1767 4.6682 2.8888 17 6 4.9474 5.9536 3.2262 18 6 4.0350 7.1619 3.0035 19 6 4.7860 8.4424 3.3740 20 6 5.0900 8.4373 4.8499 21 1 4.7791 7.6039 5.4625 22 6 5.7660 9.4961 5.4182 23 7 6.1450 10.5107 4.6723 24 14 6.1435 9.4895 7.2477 25 1 7.4618 8.8461 7.4787 26 1 6.1792 10.8861 7.7508 27 1 5.0895 8.7307 7.9679 28 6 3.6171 7.2233 1.5325 29 6 2.8360 5.9552 1.1744 30 1 -0.3634 -0.0052 1.0276 31 1 -0.3634 0.8926 -0.5094 32 1 -0.3634 -0.8874 -0.5183 33 1 5.0076 -1.7974 0.9828 34 1 4.7192 -2.2301 -0.7222 35 1 5.8818 -0.2521 -1.4981 36 1 6.9265 -1.0288 -0.2844 37 1 6.8818 1.3458 0.2071 38 1 5.9060 0.5254 1.4504 39 1 4.9217 2.6227 1.8623 40 1 3.3502 4.5402 3.5879 41 1 4.8472 3.8112 2.9518 42 1 5.8231 6.0353 2.5824 43 1 5.2635 5.9237 4.2690 44 1 3.1477 7.0673 3.6294 45 1 5.7180 8.4928 2.8111 46 1 4.1688 9.3081 3.1331 47 1 6.6202 11.2559 5.0722 48 1 4.5053 7.2931 0.9045 49 1 2.9863 8.0973 1.3697 50 1 2.6217 5.9476 0.1056 51 1 1.9025 5.9300 1.7365 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591973333.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:15:00 Heat of formation + Delta-G solvation = 25.579692 kcal Electronic energy + Delta-G solvation = -31223.021538 eV Core-core repulsion = 27157.576728 eV Total energy + Delta-G solvation = -4065.444810 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -43.39899 -41.39486 -39.06108 -38.07008 -35.81937 -35.64684 -34.03522 -33.02098 -32.78901 -31.82467 -30.19582 -29.53799 -28.86598 -26.34313 -24.89551 -24.13648 -23.93702 -23.24642 -21.71225 -21.43466 -20.86013 -20.28950 -19.00094 -18.37065 -17.95060 -17.55171 -17.05954 -16.53850 -16.49231 -16.12555 -15.69779 -15.44086 -15.27537 -15.14516 -15.01994 -14.63382 -14.46914 -14.26714 -14.05154 -13.92304 -13.79364 -13.54960 -13.35591 -13.27224 -13.00571 -12.93923 -12.70839 -12.57974 -12.46592 -12.29774 -12.16410 -12.11464 -11.92510 -11.72490 -11.37038 -11.20683 -10.99064 -10.94433 -10.80558 -10.77244 -10.49557 -10.42927 -10.27962 -9.45292 -8.13580 -6.23063 0.48460 1.29025 1.43198 1.44369 1.54850 1.58638 1.91992 2.19423 2.44950 2.84584 2.95484 3.20175 3.31968 3.51621 3.75634 3.79107 3.94597 4.00450 4.05156 4.11172 4.21181 4.24112 4.26523 4.43542 4.49542 4.55111 4.64111 4.66562 4.70967 4.82912 4.84305 4.85614 4.88197 4.93128 4.97674 5.00845 5.09636 5.14403 5.33749 5.34879 5.35991 5.41290 5.42025 5.46154 5.58615 5.62729 5.81304 5.84875 5.92951 5.98733 6.32222 6.93898 6.95058 7.13138 7.45636 7.59019 8.98411 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.016935 B = 0.002276 C = 0.002181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.959399 B =12301.266849 C =12835.060159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 C 0.195 3.805 3 N -0.554 5.554 4 C 0.254 3.746 5 N -0.372 5.372 6 N -0.339 5.339 7 C 0.112 3.888 8 C -0.123 4.123 9 C -0.126 4.126 10 C 0.245 3.755 11 H 0.104 0.896 12 N -0.723 5.723 13 C 0.714 3.286 14 O -0.620 6.620 15 N -0.624 5.624 16 C 0.119 3.881 17 C -0.110 4.110 18 C -0.072 4.072 19 C 0.033 3.967 20 C -0.524 4.524 21 H 0.068 0.932 22 C -0.004 4.004 23 N -0.938 5.938 24 Si 0.960 3.040 25 H -0.273 1.273 26 H -0.289 1.289 27 H -0.261 1.261 28 C -0.120 4.120 29 C 0.140 3.860 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.095 0.905 33 H 0.107 0.893 34 H 0.107 0.893 35 H 0.078 0.922 36 H 0.143 0.857 37 H 0.118 0.882 38 H 0.094 0.906 39 H 0.411 0.589 40 H 0.077 0.923 41 H 0.099 0.901 42 H 0.048 0.952 43 H 0.077 0.923 44 H 0.061 0.939 45 H -0.015 1.015 46 H -0.016 1.016 47 H 0.260 0.740 48 H 0.046 0.954 49 H 0.070 0.930 50 H 0.078 0.922 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.709 -27.874 -7.790 28.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.086 4.086 3 N -0.282 5.282 4 C -0.025 4.025 5 N -0.164 5.164 6 N -0.169 5.169 7 C -0.007 4.007 8 C -0.162 4.162 9 C -0.164 4.164 10 C 0.135 3.865 11 H 0.122 0.878 12 N -0.381 5.381 13 C 0.416 3.584 14 O -0.500 6.500 15 N -0.360 5.360 16 C -0.003 4.003 17 C -0.149 4.149 18 C -0.091 4.091 19 C -0.004 4.004 20 C -0.562 4.562 21 H 0.086 0.914 22 C -0.201 4.201 23 N -0.579 5.579 24 Si 0.785 3.215 25 H -0.198 1.198 26 H -0.215 1.215 27 H -0.185 1.185 28 C -0.159 4.159 29 C 0.016 3.984 30 H 0.110 0.890 31 H 0.102 0.898 32 H 0.114 0.886 33 H 0.125 0.875 34 H 0.125 0.875 35 H 0.096 0.904 36 H 0.161 0.839 37 H 0.136 0.864 38 H 0.112 0.888 39 H 0.250 0.750 40 H 0.096 0.904 41 H 0.117 0.883 42 H 0.067 0.933 43 H 0.095 0.905 44 H 0.079 0.921 45 H 0.004 0.996 46 H 0.003 0.997 47 H 0.069 0.931 48 H 0.065 0.935 49 H 0.088 0.912 50 H 0.096 0.904 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.231 -28.090 -8.596 29.402 hybrid contribution 0.389 0.880 1.094 1.456 sum -0.842 -27.211 -7.503 28.238 Atomic orbital electron populations 1.20163 0.82223 1.04495 1.04438 1.25075 0.99701 0.85343 0.98515 1.70260 1.01381 1.31689 1.24917 1.25280 0.95695 0.84631 0.96849 1.50634 1.06118 1.05666 1.54031 1.77778 0.87922 1.22966 1.28227 1.22406 0.78216 0.94848 1.05279 1.22017 0.98762 0.94643 1.00759 1.22098 0.96052 0.95998 1.02285 1.19585 0.87564 0.84109 0.95230 0.87850 1.44950 1.61025 1.15482 1.16677 1.15842 0.78180 0.80317 0.84083 1.90865 1.59398 1.80379 1.19374 1.47317 1.54956 1.22284 1.11480 1.21870 0.98307 0.98217 0.81908 1.21841 0.97569 0.93420 1.02026 1.21019 0.98034 0.95544 0.94489 1.19016 0.93667 0.92542 0.95192 1.21666 1.35212 1.04435 0.94917 0.91410 1.25971 0.96049 0.95365 1.02755 1.70116 1.40773 1.09388 1.37626 0.85517 0.78951 0.77140 0.79862 1.19808 1.21544 1.18476 1.21915 0.99809 0.97315 0.96822 1.21381 0.92778 0.82936 1.01261 0.88957 0.89842 0.88648 0.87541 0.87525 0.90357 0.83888 0.86361 0.88796 0.74974 0.90426 0.88338 0.93294 0.90483 0.92102 0.99643 0.99731 0.93106 0.93478 0.91189 0.90392 0.90762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.04 10.51 71.23 0.75 -0.29 16 2 C 0.20 5.30 8.15 138.48 1.13 6.43 16 3 N -0.55 -17.05 11.16 -179.32 -2.00 -19.06 16 4 C 0.25 6.19 7.28 138.36 1.01 7.20 16 5 N -0.37 -7.65 4.04 -338.34 -1.37 -9.02 16 6 N -0.34 -8.74 12.74 -51.08 -0.65 -9.39 16 7 C 0.11 1.01 7.30 86.52 0.63 1.64 16 8 C -0.12 -0.48 5.95 30.75 0.18 -0.30 16 9 C -0.13 -0.91 5.45 30.80 0.17 -0.74 16 10 C 0.24 4.59 2.88 44.47 0.13 4.72 16 11 H 0.10 2.32 7.55 -2.38 -0.02 2.30 16 12 N -0.72 -15.60 5.00 -460.33 -2.30 -17.90 16 13 C 0.71 21.76 8.24 179.05 1.48 23.24 16 14 O -0.62 -23.84 15.41 -3.99 -0.06 -23.91 16 15 N -0.62 -18.21 2.97 -836.06 -2.48 -20.69 16 16 C 0.12 2.94 6.42 86.51 0.56 3.50 16 17 C -0.11 -3.59 5.21 30.82 0.16 -3.43 16 18 C -0.07 -2.78 2.10 -10.77 -0.02 -2.80 16 19 C 0.03 1.68 4.45 29.84 0.13 1.81 16 20 C -0.52 -28.28 8.39 25.60 0.21 -28.06 16 21 H 0.07 3.42 7.06 -2.91 -0.02 3.40 16 22 C 0.00 -0.25 5.46 84.65 0.46 0.21 16 23 N -0.94 -56.75 13.29 21.45 0.28 -56.46 16 24 Si 0.96 43.05 29.54 68.60 2.03 45.07 16 25 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 26 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 27 H -0.26 -11.02 7.11 99.48 0.71 -10.32 16 28 C -0.12 -4.17 5.36 30.67 0.16 -4.01 16 29 C 0.14 4.33 6.44 86.36 0.56 4.89 16 30 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.08 1.61 8.14 -2.38 -0.02 1.59 16 32 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.11 0.61 8.14 -2.38 -0.02 0.59 16 34 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.08 0.43 8.12 -2.39 -0.02 0.41 16 36 H 0.14 -0.44 8.14 -2.39 -0.02 -0.46 16 37 H 0.12 0.47 8.14 -2.39 -0.02 0.45 16 38 H 0.09 0.48 8.10 -2.39 -0.02 0.46 16 39 H 0.41 6.56 6.07 -92.70 -0.56 5.99 16 40 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.10 1.75 5.64 -2.39 -0.01 1.74 16 42 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 43 H 0.08 2.61 6.91 -2.38 -0.02 2.59 16 44 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 45 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 46 H -0.02 -0.89 8.14 -2.38 -0.02 -0.91 16 47 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 48 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 49 H 0.07 2.40 8.14 -2.38 -0.02 2.38 16 50 H 0.08 2.59 7.00 -2.38 -0.02 2.58 16 51 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -82.91 401.90 1.51 -81.39 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: 0.37 Total: 15.96 kcal Atomic # 6 Polarization: 6.31 SS G_CDS: 7.69 Total: 14.00 kcal Atomic # 7 Polarization: -124.00 SS G_CDS: -8.51 Total: -132.52 kcal Atomic # 8 Polarization: -23.84 SS G_CDS: -0.06 Total: -23.91 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.07 kcal Total: -82.91 1.51 -81.39 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591973333.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.970 kcal (2) G-P(sol) polarization free energy of solvation -82.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.391 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds