Wall clock time and date at job start Wed Apr 1 2020 04:49:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35243 * 126.07247 * 2 1 4 4 C 1.40402 * 107.86618 * 180.16055 * 3 2 1 5 5 N 1.40205 * 125.96742 * 179.82975 * 4 3 2 6 6 C 1.34772 * 120.00187 * 359.72082 * 5 4 3 7 7 O 1.21592 * 120.00265 * 359.97438 * 6 5 4 8 8 N 1.34775 * 120.00191 * 180.02562 * 6 5 4 9 9 C 1.48116 * 127.83856 * 0.02562 * 8 6 5 10 10 C 1.54330 * 104.69542 * 140.22544 * 9 8 6 11 11 H 1.08998 * 111.85233 * 262.44616 * 10 9 8 12 12 C 1.54165 * 108.86140 * 137.43989 * 10 9 8 13 13 C 1.54837 * 104.32948 * 223.78861 * 12 10 9 14 14 C 1.54842 * 102.73164 * 38.19307 * 13 12 10 15 15 C 1.54160 * 104.32933 * 321.81033 * 14 13 12 16 16 C 1.53005 * 111.82390 * 260.29922 * 15 14 13 17 17 N 1.46900 * 109.46791 * 298.61921 * 16 15 14 18 18 C 1.48117 * 127.84605 * 179.97438 * 8 6 5 19 19 N 1.31201 * 108.05498 * 359.56794 * 4 3 2 20 20 N 1.34967 * 126.06965 * 179.68562 * 2 1 3 21 21 C 1.46494 * 125.97649 * 359.97438 * 20 2 1 22 22 C 1.50699 * 109.47048 * 269.99731 * 21 20 2 23 23 H 1.07991 * 120.00271 * 0.02562 * 22 21 20 24 24 C 1.37877 * 119.99980 * 179.97438 * 22 21 20 25 25 N 1.31518 * 120.00128 * 0.02562 * 24 22 21 26 26 Si 1.86804 * 120.00198 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.46632 * 0.02562 * 26 24 22 28 28 H 1.48499 * 109.47026 * 120.00009 * 26 24 22 29 29 H 1.48495 * 109.46993 * 240.00268 * 26 24 22 30 30 H 1.09007 * 109.46880 * 270.31776 * 1 2 3 31 31 H 1.09000 * 109.47095 * 30.31289 * 1 2 3 32 32 H 1.09003 * 109.47419 * 150.31959 * 1 2 3 33 33 H 1.08000 * 126.06611 * 359.97438 * 3 2 1 34 34 H 0.97003 * 119.99453 * 179.71872 * 5 4 3 35 35 H 1.09004 * 110.39160 * 259.02736 * 9 8 6 36 36 H 1.08995 * 110.39777 * 21.41827 * 9 8 6 37 37 H 1.09007 * 110.45860 * 105.08043 * 12 10 9 38 38 H 1.09004 * 110.56969 * 342.55941 * 12 10 9 39 39 H 1.08999 * 110.76159 * 279.88101 * 13 12 10 40 40 H 1.09002 * 110.91718 * 156.57412 * 13 12 10 41 41 H 1.09002 * 110.45938 * 203.10317 * 14 13 12 42 42 H 1.08999 * 110.46839 * 80.52117 * 14 13 12 43 43 H 1.08998 * 109.47275 * 58.61575 * 16 15 14 44 44 H 1.09001 * 109.47330 * 178.61423 * 16 15 14 45 45 H 1.00897 * 111.00806 * 56.04535 * 17 16 15 46 46 H 1.00900 * 111.00060 * 180.02562 * 17 16 15 47 47 H 1.08996 * 110.39042 * 338.58086 * 18 8 6 48 48 H 1.08996 * 110.39321 * 100.97410 * 18 8 6 49 49 H 1.08999 * 109.47090 * 30.00012 * 21 20 2 50 50 H 1.09005 * 109.47024 * 150.00132 * 21 20 2 51 51 H 0.97000 * 120.00383 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3033 1.0931 0.0000 4 6 3.6370 0.6545 -0.0037 5 7 4.7738 1.4751 -0.0083 6 6 4.6370 2.8159 -0.0152 7 8 3.5278 3.3139 -0.0178 8 7 5.7298 3.6047 -0.0201 9 6 7.1511 3.1882 -0.0196 10 6 7.8485 4.1745 -0.9801 11 1 7.9668 3.7534 -1.9785 12 6 9.1908 4.6099 -0.3593 13 6 9.2442 6.1392 -0.5958 14 6 7.7749 6.5713 -0.3682 15 6 6.9417 5.4306 -0.9858 16 6 6.4373 5.7880 -2.3854 17 7 5.5656 6.9677 -2.3052 18 6 5.7819 5.0850 -0.0283 19 7 3.6336 -0.6575 0.0035 20 7 2.3016 -1.0909 0.0060 21 6 1.8501 -2.4845 0.0142 22 6 1.6958 -2.9542 1.4378 23 1 1.9120 -2.2818 2.2547 24 6 1.2775 -4.2421 1.6973 25 7 1.0137 -5.0609 0.7024 26 14 1.0856 -4.8242 3.4619 27 1 1.4416 -3.7199 4.3888 28 1 -0.3223 -5.2334 3.6978 29 1 1.9844 -5.9816 3.7018 30 1 -0.3633 0.0057 1.0277 31 1 -0.3633 0.8872 -0.5187 32 1 -0.3634 -0.8928 -0.5089 33 1 1.9721 2.1211 -0.0004 34 1 5.6587 1.0778 -0.0066 35 1 7.5713 3.2728 0.9826 36 1 7.2478 2.1669 -0.3878 37 1 10.0217 4.1170 -0.8640 38 1 9.2089 4.3884 0.7079 39 1 9.5589 6.3617 -1.6154 40 1 9.9048 6.6215 0.1247 41 1 7.5708 7.5120 -0.8795 42 1 7.5651 6.6624 0.6975 43 1 7.2865 6.0071 -3.0327 44 1 5.8757 4.9483 -2.7946 45 1 6.0438 7.7419 -1.8694 46 1 5.2189 7.2238 -3.2175 47 1 4.8446 5.4959 -0.4032 48 1 5.9902 5.4632 0.9725 49 1 0.8912 -2.5588 -0.4989 50 1 2.5846 -3.1075 -0.4964 51 1 0.7198 -5.9671 0.8850 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593762571.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:49:15 Heat of formation + Delta-G solvation = 55.194664 kcal Electronic energy + Delta-G solvation = -30839.450079 eV Core-core repulsion = 26775.289471 eV Total energy + Delta-G solvation = -4064.160609 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.10121 -40.42620 -38.92781 -35.21024 -34.77164 -34.48213 -33.29501 -31.39234 -30.80201 -30.43872 -29.49667 -26.70394 -26.28081 -26.01761 -25.49616 -23.44675 -22.74874 -21.13474 -20.78188 -19.65715 -19.17622 -18.84349 -17.57176 -16.71356 -16.62465 -16.31826 -16.15295 -15.52155 -15.14891 -14.95480 -14.82842 -14.58799 -14.31068 -14.16008 -13.98861 -13.73091 -13.27271 -13.00692 -12.86483 -12.61616 -12.43587 -12.22775 -12.12441 -11.96838 -11.65335 -11.51077 -11.40660 -11.35123 -11.22776 -11.09288 -11.04101 -10.95791 -10.82149 -10.81399 -10.37139 -10.21281 -9.90714 -9.56561 -9.46629 -9.01514 -8.79875 -8.61592 -7.84270 -7.32982 -6.22174 -4.29401 2.35885 2.71899 3.16853 3.22377 3.30128 3.36184 3.50978 3.82222 3.88997 3.99093 4.12491 4.24115 4.35401 4.45049 4.74285 4.76510 4.80126 4.82304 4.87781 5.02866 5.11423 5.19419 5.28115 5.33741 5.39957 5.43191 5.46978 5.53131 5.60016 5.66407 5.72361 5.77626 5.83169 5.89913 5.94176 5.99624 6.10898 6.17776 6.34720 6.52799 6.68374 6.76550 6.79088 6.98293 7.07947 7.09729 7.23147 7.60235 7.71291 7.93137 8.00991 8.13182 8.69073 8.73665 8.81186 9.36713 10.84964 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.020571 B = 0.002131 C = 0.002020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.838865 B =13136.449464 C =13856.839940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.091 3.909 3 C -0.288 4.288 4 C 0.284 3.716 5 N -0.643 5.643 6 C 0.736 3.264 7 O -0.561 6.561 8 N -0.640 5.640 9 C 0.102 3.898 10 C -0.097 4.097 11 H 0.090 0.910 12 C -0.117 4.117 13 C -0.124 4.124 14 C -0.113 4.113 15 C -0.071 4.071 16 C 0.084 3.916 17 N -0.848 5.848 18 C 0.140 3.860 19 N -0.325 5.325 20 N -0.319 5.319 21 C 0.259 3.741 22 C -0.533 4.533 23 H 0.065 0.935 24 C 0.064 3.936 25 N -0.892 5.892 26 Si 0.906 3.094 27 H -0.271 1.271 28 H -0.281 1.281 29 H -0.281 1.281 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.160 0.840 34 H 0.404 0.596 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.065 0.935 40 H 0.068 0.932 41 H 0.065 0.935 42 H 0.074 0.926 43 H 0.028 0.972 44 H 0.075 0.925 45 H 0.338 0.662 46 H 0.344 0.656 47 H 0.100 0.900 48 H 0.066 0.934 49 H 0.054 0.946 50 H 0.051 0.949 51 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.760 23.963 -5.401 29.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.041 4.041 3 C -0.319 4.319 4 C 0.030 3.970 5 N -0.293 5.293 6 C 0.437 3.563 7 O -0.436 6.436 8 N -0.379 5.379 9 C -0.021 4.021 10 C -0.117 4.117 11 H 0.108 0.892 12 C -0.155 4.155 13 C -0.161 4.161 14 C -0.151 4.151 15 C -0.073 4.073 16 C -0.047 4.047 17 N -0.378 5.378 18 C 0.017 3.983 19 N -0.156 5.156 20 N -0.102 5.102 21 C 0.141 3.859 22 C -0.571 4.571 23 H 0.083 0.917 24 C -0.139 4.139 25 N -0.531 5.531 26 Si 0.733 3.267 27 H -0.196 1.196 28 H -0.207 1.207 29 H -0.207 1.207 30 H 0.095 0.905 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.178 0.822 34 H 0.239 0.761 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.087 0.913 38 H 0.091 0.909 39 H 0.084 0.916 40 H 0.087 0.913 41 H 0.084 0.916 42 H 0.093 0.907 43 H 0.046 0.954 44 H 0.093 0.907 45 H 0.152 0.848 46 H 0.156 0.844 47 H 0.118 0.882 48 H 0.084 0.916 49 H 0.072 0.928 50 H 0.069 0.931 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 14.969 22.434 -4.978 27.425 hybrid contribution 0.814 0.309 0.320 0.928 sum 15.784 22.743 -4.659 28.073 Atomic orbital electron populations 1.20325 0.87943 1.02761 1.03114 1.21049 0.94862 0.87165 1.01009 1.21236 0.89692 0.99811 1.21203 1.18660 0.86556 0.89231 1.02538 1.41406 1.07500 1.03631 1.76802 1.15021 0.83257 0.80061 0.77943 1.90881 1.22667 1.73299 1.56719 1.48003 1.04137 1.07250 1.78462 1.22592 0.81368 0.98709 0.99456 1.22723 0.94522 0.94895 0.99517 0.89215 1.22444 0.96143 0.95853 1.01051 1.22505 0.96456 0.95633 1.01539 1.22478 0.94377 0.97139 1.01086 1.22098 0.95025 0.94763 0.95415 1.21605 0.94547 0.94131 0.94423 1.58645 1.42531 1.08669 1.28003 1.22330 1.00116 0.78041 0.97852 1.77233 0.99929 1.08305 1.30114 1.48941 1.00894 1.07700 1.52622 1.19666 0.95922 0.71429 0.98868 1.21371 1.46416 0.97920 0.91441 0.91718 1.24932 0.94752 0.96080 0.98105 1.69931 1.45164 1.06907 1.31069 0.86309 0.77840 0.78756 0.83834 1.19585 1.20660 1.20693 0.90474 0.90837 0.90926 0.82249 0.76124 0.90673 0.90728 0.91295 0.90866 0.91646 0.91345 0.91643 0.90730 0.95362 0.90702 0.84818 0.84372 0.88152 0.91587 0.92828 0.93083 0.92362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.48 10.11 36.00 0.36 -1.12 16 2 C 0.09 1.99 6.92 -82.28 -0.57 1.42 16 3 C -0.29 -6.29 9.52 -39.83 -0.38 -6.67 16 4 C 0.28 6.11 8.11 -154.36 -1.25 4.86 16 5 N -0.64 -11.03 5.43 -15.51 -0.08 -11.12 16 6 C 0.74 12.24 8.54 -86.92 -0.74 11.49 16 7 O -0.56 -11.25 13.73 5.28 0.07 -11.18 16 8 N -0.64 -7.72 3.31 -175.15 -0.58 -8.30 16 9 C 0.10 0.86 6.45 -2.46 -0.02 0.84 16 10 C -0.10 -0.64 3.59 -88.30 -0.32 -0.96 16 11 H 0.09 0.60 7.91 -51.93 -0.41 0.19 16 12 C -0.12 -0.59 6.36 -25.15 -0.16 -0.75 16 13 C -0.12 -0.57 6.90 -24.79 -0.17 -0.74 16 14 C -0.11 -0.60 5.81 -25.15 -0.15 -0.74 16 15 C -0.07 -0.51 0.73 -152.20 -0.11 -0.62 16 16 C 0.08 0.62 5.87 -3.82 -0.02 0.59 16 17 N -0.85 -5.81 8.91 -10.37 -0.09 -5.90 16 18 C 0.14 1.42 6.10 -2.46 -0.02 1.41 16 19 N -0.33 -7.79 12.59 31.44 0.40 -7.39 16 20 N -0.32 -7.82 3.59 -58.33 -0.21 -8.03 16 21 C 0.26 6.79 5.99 -5.20 -0.03 6.76 16 22 C -0.53 -14.95 9.39 -34.44 -0.32 -15.28 16 23 H 0.06 1.88 7.81 -52.49 -0.41 1.47 16 24 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 25 N -0.89 -25.38 13.29 55.43 0.74 -24.65 16 26 Si 0.91 21.41 29.54 -169.99 -5.02 16.39 16 27 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 28 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 29 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 30 H 0.08 1.33 8.14 -51.92 -0.42 0.91 16 31 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.07 1.29 7.07 -51.93 -0.37 0.93 16 33 H 0.16 3.45 5.91 -52.49 -0.31 3.14 16 34 H 0.40 5.76 7.22 -40.82 -0.29 5.47 16 35 H 0.08 0.56 7.19 -51.93 -0.37 0.18 16 36 H 0.07 0.59 6.86 -51.93 -0.36 0.23 16 37 H 0.07 0.31 8.14 -51.92 -0.42 -0.11 16 38 H 0.07 0.36 7.18 -51.93 -0.37 -0.01 16 39 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 40 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 41 H 0.06 0.30 6.22 -51.93 -0.32 -0.03 16 42 H 0.07 0.41 7.18 -51.93 -0.37 0.04 16 43 H 0.03 0.18 8.14 -51.93 -0.42 -0.24 16 44 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.34 1.78 7.10 -39.29 -0.28 1.50 16 46 H 0.34 1.97 9.08 -39.29 -0.36 1.61 16 47 H 0.10 1.27 7.10 -51.93 -0.37 0.90 16 48 H 0.07 0.62 7.18 -51.93 -0.37 0.25 16 49 H 0.05 1.39 7.04 -51.93 -0.37 1.02 16 50 H 0.05 1.42 8.14 -51.93 -0.42 1.00 16 51 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 399.04 15.07 6.01 6.01 Total: -1.00 -33.72 399.04 -10.61 -44.33 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: -7.85 Total: 7.63 kcal Atomic # 6 Polarization: 6.18 SS G_CDS: -3.99 Total: 2.19 kcal Atomic # 7 Polarization: -65.55 SS G_CDS: 0.17 Total: -65.38 kcal Atomic # 8 Polarization: -11.25 SS G_CDS: 0.07 Total: -11.18 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -33.72 -10.61 -44.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593762571.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.525 kcal (2) G-P(sol) polarization free energy of solvation -33.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds