Wall clock time and date at job start Wed Apr 1 2020 04:50:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50696 * 1
3 3 C 1.35247 * 126.07593 * 2 1
4 4 C 1.40398 * 107.87033 * 180.15760 * 3 2 1
5 5 N 1.40197 * 125.97304 * 179.82916 * 4 3 2
6 6 C 1.34774 * 119.99864 * 359.72235 * 5 4 3
7 7 O 1.21587 * 120.00026 * 359.97438 * 6 5 4
8 8 N 1.34783 * 119.99691 * 180.02562 * 6 5 4
9 9 C 1.46494 * 119.99607 * 179.97438 * 8 6 5
10 10 H 1.08998 * 110.65008 * 323.30087 * 9 8 6
11 11 C 1.54594 * 110.72572 * 86.45384 * 9 8 6
12 12 C 1.53994 * 105.14238 * 140.31180 * 11 9 8
13 13 N 1.47904 * 107.05642 * 1.22795 * 12 11 9
14 14 C 1.46905 * 110.99693 * 214.15542 * 13 12 11
15 15 C 1.52996 * 109.46782 * 175.65424 * 14 13 12
16 16 C 1.53001 * 117.50001 * 243.55698 * 15 14 13
17 17 C 1.53008 * 60.00140 * 252.51280 * 16 15 14
18 18 C 1.48529 * 105.81955 * 334.66594 * 13 12 11
19 19 N 1.31217 * 108.05445 * 359.57210 * 4 3 2
20 20 N 1.34965 * 126.06961 * 179.68645 * 2 1 3
21 21 C 1.46502 * 125.97461 * 359.97438 * 20 2 1
22 22 C 1.50693 * 109.47297 * 269.99979 * 21 20 2
23 23 H 1.08007 * 119.99685 * 359.97438 * 22 21 20
24 24 C 1.37878 * 120.00099 * 179.97438 * 22 21 20
25 25 N 1.31513 * 119.99791 * 180.02562 * 24 22 21
26 26 Si 1.86796 * 120.00083 * 0.02562 * 24 22 21
27 27 H 1.48502 * 109.47164 * 89.99537 * 26 24 22
28 28 H 1.48500 * 109.46971 * 209.99941 * 26 24 22
29 29 H 1.48503 * 109.47035 * 329.99970 * 26 24 22
30 30 H 1.08996 * 109.47034 * 270.31945 * 1 2 3
31 31 H 1.09007 * 109.46833 * 30.31122 * 1 2 3
32 32 H 1.08992 * 109.47653 * 150.31569 * 1 2 3
33 33 H 1.07999 * 126.06584 * 359.97438 * 3 2 1
34 34 H 0.97001 * 119.99546 * 179.72351 * 5 4 3
35 35 H 0.96998 * 120.00119 * 359.97438 * 8 6 5
36 36 H 1.08999 * 110.30940 * 21.39610 * 11 9 8
37 37 H 1.08999 * 110.30732 * 259.22728 * 11 9 8
38 38 H 1.08996 * 109.91805 * 241.87145 * 12 11 9
39 39 H 1.09001 * 110.08268 * 120.66942 * 12 11 9
40 40 H 1.09001 * 109.46954 * 55.65627 * 14 13 12
41 41 H 1.08996 * 109.47116 * 295.65372 * 14 13 12
42 42 H 1.09002 * 115.55433 * 29.26610 * 15 14 13
43 43 H 1.09001 * 117.49635 * 0.02562 * 16 15 14
44 44 H 1.09002 * 117.49864 * 145.02536 * 16 15 14
45 45 H 1.08999 * 117.49757 * 252.50909 * 17 16 15
46 46 H 1.08999 * 117.51915 * 107.47979 * 17 16 15
47 47 H 1.09001 * 110.66565 * 157.64663 * 18 13 12
48 48 H 1.09005 * 110.67263 * 280.77430 * 18 13 12
49 49 H 1.09001 * 109.47124 * 30.00415 * 21 20 2
50 50 H 1.09004 * 109.46909 * 150.00174 * 21 20 2
51 51 H 0.97000 * 119.99974 * 180.02562 * 25 24 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.3034 1.0931 0.0000
4 6 3.6371 0.6545 -0.0037
5 7 4.7738 1.4750 -0.0083
6 6 4.6371 2.8158 -0.0151
7 8 3.5279 3.3137 -0.0178
8 7 5.7300 3.6046 -0.0200
9 6 5.5813 5.0619 -0.0280
10 1 4.7284 5.3580 -0.6388
11 6 5.4376 5.6051 1.4122
12 6 6.2589 6.9075 1.4347
13 7 6.8059 7.0991 0.0739
14 6 8.1333 7.7266 0.1237
15 6 8.7115 7.8093 -1.2903
16 6 9.9882 7.0170 -1.5790
17 6 10.0431 8.5420 -1.4673
18 6 6.8806 5.7428 -0.5270
19 7 3.6336 -0.6577 0.0035
20 7 2.3016 -1.0909 0.0060
21 6 1.8499 -2.4846 0.0141
22 6 1.6956 -2.9543 1.4376
23 1 1.9127 -2.2820 2.2546
24 6 1.2773 -4.2422 1.6971
25 7 1.1421 -4.6519 2.9395
26 14 0.9026 -5.4051 0.2841
27 1 2.1350 -6.1452 -0.0880
28 1 -0.1469 -6.3692 0.7015
29 1 0.4217 -4.6251 -0.8846
30 1 -0.3633 0.0057 1.0276
31 1 -0.3633 0.8872 -0.5187
32 1 -0.3634 -0.8927 -0.5089
33 1 1.9722 2.1211 -0.0004
34 1 5.6587 1.0776 -0.0065
35 1 6.6149 3.2073 -0.0183
36 1 5.8425 4.8901 2.1283
37 1 4.3912 5.8138 1.6350
38 1 7.0735 6.8204 2.1536
39 1 5.6188 7.7492 1.6994
40 1 8.7941 7.1295 0.7522
41 1 8.0453 8.7303 0.5396
42 1 7.9795 7.8948 -2.0934
43 1 10.4158 6.4365 -0.7615
44 1 10.0962 6.5809 -2.5721
45 1 10.1872 9.1091 -2.3869
46 1 10.5069 8.9654 -0.5763
47 1 6.8893 5.8043 -1.6153
48 1 7.7587 5.2088 -0.1638
49 1 0.8911 -2.5588 -0.4990
50 1 2.5845 -3.1075 -0.4964
51 1 0.8482 -5.5581 3.1220
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000611481746.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:50:59
Heat of formation + Delta-G solvation = 90.608586 kcal
Electronic energy + Delta-G solvation = -29690.624489 eV
Core-core repulsion = 25627.999543 eV
Total energy + Delta-G solvation = -4062.624946 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.206 amu
Computer time = 1.07 seconds
Orbital eigenvalues (eV)
-40.87450 -40.12814 -39.15583 -37.40086 -34.94024 -34.45680 -33.27672 -31.68902
-31.15881 -30.84734 -28.86735 -27.07847 -26.39714 -26.12681 -23.08609 -22.83030
-22.08140 -21.80477 -20.83184 -20.60705 -19.89415 -19.56032 -17.83258 -17.10918
-17.02044 -16.60318 -16.07171 -15.60821 -15.35493 -15.10448 -14.75298 -14.72655
-14.41422 -14.18234 -13.89600 -13.78057 -13.68688 -13.14777 -12.89229 -12.60992
-12.42714 -12.35510 -12.25419 -12.12026 -11.97568 -11.87520 -11.79585 -11.59750
-11.55964 -11.20701 -10.94631 -10.79503 -10.77128 -10.56335 -10.41524 -10.06865
-9.94910 -9.72047 -9.57089 -9.26772 -8.89177 -8.77603 -7.96190 -7.42365
-6.25578 -4.28454 2.29156 2.59223 3.06117 3.15844 3.21725 3.22781
3.26685 3.40601 3.64702 3.79150 4.12506 4.21548 4.22074 4.33092
4.42795 4.51673 4.56052 4.76706 4.86032 4.89298 5.02625 5.03129
5.08613 5.17766 5.24760 5.27898 5.35021 5.42570 5.51923 5.57687
5.63745 5.64403 5.76180 5.78640 5.84892 5.87935 6.06783 6.16987
6.21640 6.38411 6.42653 6.49551 6.51550 6.57653 6.62472 6.80073
7.04840 7.30041 7.47635 7.87980 7.90672 8.32615 8.57344 8.61768
8.80138 9.29739 10.86979
Molecular weight = 347.21amu
Principal moments of inertia in cm(-1)
A = 0.025258 B = 0.001700 C = 0.001668
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1108.297556 B =16469.355577 C =16780.039419
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.085 4.085
2 C 0.095 3.905
3 C -0.286 4.286
4 C 0.287 3.713
5 N -0.644 5.644
6 C 0.715 3.285
7 O -0.562 6.562
8 N -0.738 5.738
9 C 0.164 3.836
10 H 0.105 0.895
11 C -0.145 4.145
12 C 0.037 3.963
13 N -0.511 5.511
14 C 0.079 3.921
15 C -0.150 4.150
16 C -0.183 4.183
17 C -0.177 4.177
18 C 0.034 3.966
19 N -0.322 5.322
20 N -0.318 5.318
21 C 0.232 3.768
22 C -0.540 4.540
23 H 0.081 0.919
24 C 0.079 3.921
25 N -0.887 5.887
26 Si 0.874 3.126
27 H -0.271 1.271
28 H -0.280 1.280
29 H -0.264 1.264
30 H 0.080 0.920
31 H 0.075 0.925
32 H 0.070 0.930
33 H 0.163 0.837
34 H 0.406 0.594
35 H 0.396 0.604
36 H 0.073 0.927
37 H 0.082 0.918
38 H 0.046 0.954
39 H 0.083 0.917
40 H 0.037 0.963
41 H 0.081 0.919
42 H 0.113 0.887
43 H 0.092 0.908
44 H 0.094 0.906
45 H 0.095 0.905
46 H 0.093 0.907
47 H 0.091 0.909
48 H 0.051 0.949
49 H 0.050 0.950
50 H 0.045 0.955
51 H 0.268 0.732
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 14.641 24.557 -8.017 29.693
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.143 4.143
2 C -0.036 4.036
3 C -0.317 4.317
4 C 0.033 3.967
5 N -0.294 5.294
6 C 0.414 3.586
7 O -0.437 6.437
8 N -0.394 5.394
9 C 0.058 3.942
10 H 0.123 0.877
11 C -0.184 4.184
12 C -0.091 4.091
13 N -0.235 5.235
14 C -0.049 4.049
15 C -0.169 4.169
16 C -0.220 4.220
17 C -0.215 4.215
18 C -0.094 4.094
19 N -0.152 5.152
20 N -0.100 5.100
21 C 0.113 3.887
22 C -0.578 4.578
23 H 0.099 0.901
24 C -0.125 4.125
25 N -0.524 5.524
26 Si 0.700 3.300
27 H -0.197 1.197
28 H -0.205 1.205
29 H -0.189 1.189
30 H 0.099 0.901
31 H 0.094 0.906
32 H 0.088 0.912
33 H 0.180 0.820
34 H 0.241 0.759
35 H 0.230 0.770
36 H 0.091 0.909
37 H 0.101 0.899
38 H 0.064 0.936
39 H 0.102 0.898
40 H 0.056 0.944
41 H 0.100 0.900
42 H 0.131 0.869
43 H 0.110 0.890
44 H 0.113 0.887
45 H 0.114 0.886
46 H 0.111 0.889
47 H 0.109 0.891
48 H 0.069 0.931
49 H 0.068 0.932
50 H 0.063 0.937
51 H 0.079 0.921
Dipole moment (debyes) X Y Z Total
from point charges 13.911 24.050 -8.196 28.967
hybrid contribution 1.005 -1.062 0.074 1.464
sum 14.916 22.987 -8.122 28.581
Atomic orbital electron populations
1.20349 0.87833 1.02689 1.03437 1.21052 0.94887 0.86973 1.00713
1.21252 0.89643 0.99870 1.20892 1.18646 0.86633 0.89181 1.02259
1.41395 1.07564 1.03755 1.76669 1.15599 0.84773 0.80327 0.77913
1.90878 1.23442 1.73397 1.55987 1.45005 1.07576 1.06011 1.80827
1.21660 0.98712 0.77372 0.96488 0.87653 1.22876 1.01827 0.96223
0.97501 1.22869 0.98279 0.98399 0.89541 1.64741 1.22330 1.18642
1.17822 1.21872 0.88664 0.99869 0.94531 1.22305 0.90902 1.05128
0.98538 1.23078 1.01616 0.94273 1.03055 1.22946 1.00409 0.94775
1.03340 1.23392 0.96056 0.89054 1.00941 1.77250 0.99429 1.08470
1.30095 1.48477 1.01167 1.06965 1.53435 1.19985 0.95268 0.73796
0.99655 1.21186 1.47231 0.99038 0.90380 0.90126 1.24808 0.94492
0.97478 0.95765 1.69875 1.45779 1.18307 1.18431 0.86888 0.78957
0.81496 0.82645 1.19678 1.20547 1.18876 0.90103 0.90647 0.91154
0.82006 0.75924 0.77023 0.90870 0.89887 0.93599 0.89833 0.94437
0.90033 0.86856 0.88991 0.88732 0.88648 0.88852 0.89117 0.93111
0.93231 0.93717 0.92147
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -1.43 10.11 36.00 0.36 -1.06 16
2 C 0.09 1.97 6.92 -82.28 -0.57 1.40 16
3 C -0.29 -5.87 9.52 -39.83 -0.38 -6.25 16
4 C 0.29 5.79 8.11 -154.36 -1.25 4.54 16
5 N -0.64 -9.84 5.46 -15.50 -0.08 -9.92 16
6 C 0.71 10.28 8.53 -86.91 -0.74 9.54 16
7 O -0.56 -10.04 13.19 5.29 0.07 -9.97 16
8 N -0.74 -7.11 5.15 -56.86 -0.29 -7.40 16
9 C 0.16 1.48 3.35 -66.07 -0.22 1.26 16
10 H 0.11 1.17 7.69 -51.93 -0.40 0.77 16
11 C -0.14 -1.27 6.67 -25.38 -0.17 -1.44 16
12 C 0.04 0.27 6.70 -2.75 -0.02 0.25 16
13 N -0.51 -3.71 5.35 -230.45 -1.23 -4.94 16
14 C 0.08 0.48 5.12 -3.82 -0.02 0.46 16
15 C -0.15 -0.86 4.89 -90.62 -0.44 -1.30 16
16 C -0.18 -0.95 10.18 -26.73 -0.27 -1.22 16
17 C -0.18 -0.88 10.25 -26.72 -0.27 -1.15 16
18 C 0.03 0.24 5.34 -1.90 -0.01 0.23 16
19 N -0.32 -7.34 12.59 31.44 0.40 -6.94 16
20 N -0.32 -7.42 3.59 -58.33 -0.21 -7.63 16
21 C 0.23 5.61 5.06 -5.20 -0.03 5.58 16
22 C -0.54 -15.19 9.94 -34.44 -0.34 -15.53 16
23 H 0.08 2.57 8.06 -52.48 -0.42 2.14 16
24 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16
25 N -0.89 -26.38 13.96 55.43 0.77 -25.61 16
26 Si 0.87 20.19 27.47 -169.99 -4.67 15.52 16
27 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16
28 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16
29 H -0.26 -5.71 6.54 56.52 0.37 -5.34 16
30 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16
31 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16
32 H 0.07 1.15 7.07 -51.93 -0.37 0.78 16
33 H 0.16 3.27 5.91 -52.49 -0.31 2.96 16
34 H 0.41 4.90 8.84 -40.82 -0.36 4.54 16
35 H 0.40 2.67 8.54 -40.82 -0.35 2.32 16
36 H 0.07 0.66 8.05 -51.93 -0.42 0.24 16
37 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16
38 H 0.05 0.30 7.66 -51.93 -0.40 -0.10 16
39 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16
40 H 0.04 0.22 7.70 -51.93 -0.40 -0.18 16
41 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16
42 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16
43 H 0.09 0.46 8.03 -51.93 -0.42 0.04 16
44 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16
45 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16
46 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16
47 H 0.09 0.62 7.96 -51.93 -0.41 0.21 16
48 H 0.05 0.31 7.89 -51.93 -0.41 -0.10 16
49 H 0.05 1.12 6.10 -51.93 -0.32 0.80 16
50 H 0.04 1.07 7.57 -51.93 -0.39 0.68 16
51 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16
LS Contribution 412.33 15.07 6.21 6.21
Total: -1.00 -33.87 412.33 -11.85 -45.73
By element:
Atomic # 1 Polarization: 15.90 SS G_CDS: -8.35 Total: 7.55 kcal
Atomic # 6 Polarization: 1.87 SS G_CDS: -4.47 Total: -2.60 kcal
Atomic # 7 Polarization: -61.80 SS G_CDS: -0.65 Total: -62.45 kcal
Atomic # 8 Polarization: -10.04 SS G_CDS: 0.07 Total: -9.97 kcal
Atomic # 14 Polarization: 20.19 SS G_CDS: -4.67 Total: 15.52 kcal
Total LS contribution 6.21 Total: 6.21 kcal
Total: -33.87 -11.85 -45.73 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000611481746.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 136.334 kcal
(2) G-P(sol) polarization free energy of solvation -33.871 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.463 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.855 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.726 kcal
(6) G-S(sol) free energy of system = (1) + (5) 90.609 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.07 seconds