Wall clock time and date at job start Wed Apr 1 2020 04:50:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50696 * 1
3 3 C 1.35247 * 126.07593 * 2 1
4 4 C 1.40398 * 107.87033 * 180.15760 * 3 2 1
5 5 N 1.40197 * 125.97304 * 179.82916 * 4 3 2
6 6 C 1.34774 * 119.99864 * 359.72235 * 5 4 3
7 7 O 1.21587 * 120.00026 * 359.97438 * 6 5 4
8 8 N 1.34783 * 119.99691 * 180.02562 * 6 5 4
9 9 C 1.46494 * 119.99607 * 179.97438 * 8 6 5
10 10 H 1.08998 * 110.65008 * 323.30087 * 9 8 6
11 11 C 1.54594 * 110.72572 * 86.45384 * 9 8 6
12 12 C 1.53994 * 105.14238 * 140.31180 * 11 9 8
13 13 N 1.47904 * 107.05642 * 1.22795 * 12 11 9
14 14 C 1.46905 * 110.99693 * 214.15542 * 13 12 11
15 15 C 1.52996 * 109.46782 * 175.65424 * 14 13 12
16 16 C 1.53001 * 117.50001 * 243.55698 * 15 14 13
17 17 C 1.53008 * 60.00140 * 252.51280 * 16 15 14
18 18 C 1.48529 * 105.81955 * 334.66594 * 13 12 11
19 19 N 1.31217 * 108.05445 * 359.57210 * 4 3 2
20 20 N 1.34965 * 126.06961 * 179.68645 * 2 1 3
21 21 C 1.46502 * 125.97461 * 359.97438 * 20 2 1
22 22 C 1.50693 * 109.47297 * 269.99979 * 21 20 2
23 23 H 1.08007 * 119.99685 * 359.97438 * 22 21 20
24 24 C 1.37878 * 120.00099 * 179.97438 * 22 21 20
25 25 N 1.31513 * 119.99791 * 180.02562 * 24 22 21
26 26 Si 1.86796 * 120.00083 * 0.02562 * 24 22 21
27 27 H 1.48502 * 109.47164 * 89.99537 * 26 24 22
28 28 H 1.48500 * 109.46971 * 209.99941 * 26 24 22
29 29 H 1.48503 * 109.47035 * 329.99970 * 26 24 22
30 30 H 1.08996 * 109.47034 * 270.31945 * 1 2 3
31 31 H 1.09007 * 109.46833 * 30.31122 * 1 2 3
32 32 H 1.08992 * 109.47653 * 150.31569 * 1 2 3
33 33 H 1.07999 * 126.06584 * 359.97438 * 3 2 1
34 34 H 0.97001 * 119.99546 * 179.72351 * 5 4 3
35 35 H 0.96998 * 120.00119 * 359.97438 * 8 6 5
36 36 H 1.08999 * 110.30940 * 21.39610 * 11 9 8
37 37 H 1.08999 * 110.30732 * 259.22728 * 11 9 8
38 38 H 1.08996 * 109.91805 * 241.87145 * 12 11 9
39 39 H 1.09001 * 110.08268 * 120.66942 * 12 11 9
40 40 H 1.09001 * 109.46954 * 55.65627 * 14 13 12
41 41 H 1.08996 * 109.47116 * 295.65372 * 14 13 12
42 42 H 1.09002 * 115.55433 * 29.26610 * 15 14 13
43 43 H 1.09001 * 117.49635 * 0.02562 * 16 15 14
44 44 H 1.09002 * 117.49864 * 145.02536 * 16 15 14
45 45 H 1.08999 * 117.49757 * 252.50909 * 17 16 15
46 46 H 1.08999 * 117.51915 * 107.47979 * 17 16 15
47 47 H 1.09001 * 110.66565 * 157.64663 * 18 13 12
48 48 H 1.09005 * 110.67263 * 280.77430 * 18 13 12
49 49 H 1.09001 * 109.47124 * 30.00415 * 21 20 2
50 50 H 1.09004 * 109.46909 * 150.00174 * 21 20 2
51 51 H 0.97000 * 119.99974 * 180.02562 * 25 24 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.3034 1.0931 0.0000
4 6 3.6371 0.6545 -0.0037
5 7 4.7738 1.4750 -0.0083
6 6 4.6371 2.8158 -0.0151
7 8 3.5279 3.3137 -0.0178
8 7 5.7300 3.6046 -0.0200
9 6 5.5813 5.0619 -0.0280
10 1 4.7284 5.3580 -0.6388
11 6 5.4376 5.6051 1.4122
12 6 6.2589 6.9075 1.4347
13 7 6.8059 7.0991 0.0739
14 6 8.1333 7.7266 0.1237
15 6 8.7115 7.8093 -1.2903
16 6 9.9882 7.0170 -1.5790
17 6 10.0431 8.5420 -1.4673
18 6 6.8806 5.7428 -0.5270
19 7 3.6336 -0.6577 0.0035
20 7 2.3016 -1.0909 0.0060
21 6 1.8499 -2.4846 0.0141
22 6 1.6956 -2.9543 1.4376
23 1 1.9127 -2.2820 2.2546
24 6 1.2773 -4.2422 1.6971
25 7 1.1421 -4.6519 2.9395
26 14 0.9026 -5.4051 0.2841
27 1 2.1350 -6.1452 -0.0880
28 1 -0.1469 -6.3692 0.7015
29 1 0.4217 -4.6251 -0.8846
30 1 -0.3633 0.0057 1.0276
31 1 -0.3633 0.8872 -0.5187
32 1 -0.3634 -0.8927 -0.5089
33 1 1.9722 2.1211 -0.0004
34 1 5.6587 1.0776 -0.0065
35 1 6.6149 3.2073 -0.0183
36 1 5.8425 4.8901 2.1283
37 1 4.3912 5.8138 1.6350
38 1 7.0735 6.8204 2.1536
39 1 5.6188 7.7492 1.6994
40 1 8.7941 7.1295 0.7522
41 1 8.0453 8.7303 0.5396
42 1 7.9795 7.8948 -2.0934
43 1 10.4158 6.4365 -0.7615
44 1 10.0962 6.5809 -2.5721
45 1 10.1872 9.1091 -2.3869
46 1 10.5069 8.9654 -0.5763
47 1 6.8893 5.8043 -1.6153
48 1 7.7587 5.2088 -0.1638
49 1 0.8911 -2.5588 -0.4990
50 1 2.5845 -3.1075 -0.4964
51 1 0.8482 -5.5581 3.1220
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000611481746.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:50:58
Heat of formation + Delta-G solvation = 67.072392 kcal
Electronic energy + Delta-G solvation = -29691.645095 eV
Core-core repulsion = 25627.999543 eV
Total energy + Delta-G solvation = -4063.645552 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.206 amu
Computer time = 1.16 seconds
Orbital eigenvalues (eV)
-42.34569 -41.21413 -39.99844 -37.94102 -36.34731 -35.46747 -35.15822 -33.22409
-32.78325 -31.73976 -29.65868 -28.79917 -27.87842 -26.77856 -24.72229 -23.44138
-23.18679 -22.50456 -21.69005 -21.39146 -21.09922 -20.95089 -19.22689 -19.09045
-17.96237 -17.44448 -17.23584 -16.84879 -16.63759 -16.17809 -16.01180 -15.75828
-15.52014 -15.21018 -14.94740 -14.87013 -14.56254 -14.46493 -14.23549 -13.85674
-13.75801 -13.62729 -13.45503 -13.28537 -12.94493 -12.84169 -12.80192 -12.56137
-12.43857 -12.33604 -12.24588 -12.11515 -11.82215 -11.64906 -11.58458 -11.42453
-11.18052 -11.15824 -10.89108 -10.82613 -10.23507 -9.57575 -9.42928 -9.04440
-8.39668 -6.50725 0.97638 1.07862 1.36360 1.38115 1.47928 1.64903
2.02386 2.27346 2.37144 2.80782 2.92889 2.96863 3.21645 3.51351
3.70877 3.83752 3.90626 4.04513 4.09355 4.12122 4.14829 4.26851
4.35885 4.40831 4.43363 4.52925 4.57708 4.70680 4.76046 4.77265
4.80877 4.82263 4.83189 4.89861 4.94298 5.00160 5.05023 5.06695
5.13714 5.16562 5.19573 5.24505 5.28303 5.33425 5.46302 5.82973
5.86443 5.89949 6.02160 6.05368 6.38388 6.52740 6.71154 7.10050
7.13269 7.41712 8.77009
Molecular weight = 347.21amu
Principal moments of inertia in cm(-1)
A = 0.025258 B = 0.001700 C = 0.001668
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1108.297556 B =16469.355577 C =16780.039419
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.084 4.084
2 C 0.090 3.910
3 C -0.298 4.298
4 C 0.294 3.706
5 N -0.635 5.635
6 C 0.713 3.287
7 O -0.597 6.597
8 N -0.714 5.714
9 C 0.162 3.838
10 H 0.084 0.916
11 C -0.143 4.143
12 C 0.043 3.957
13 N -0.522 5.522
14 C 0.081 3.919
15 C -0.156 4.156
16 C -0.182 4.182
17 C -0.175 4.175
18 C 0.046 3.954
19 N -0.357 5.357
20 N -0.343 5.343
21 C 0.241 3.759
22 C -0.551 4.551
23 H 0.023 0.977
24 C 0.021 3.979
25 N -0.938 5.938
26 Si 0.952 3.048
27 H -0.266 1.266
28 H -0.274 1.274
29 H -0.234 1.234
30 H 0.077 0.923
31 H 0.107 0.893
32 H 0.078 0.922
33 H 0.166 0.834
34 H 0.422 0.578
35 H 0.414 0.586
36 H 0.071 0.929
37 H 0.065 0.935
38 H 0.057 0.943
39 H 0.085 0.915
40 H 0.043 0.957
41 H 0.084 0.916
42 H 0.105 0.895
43 H 0.095 0.905
44 H 0.096 0.904
45 H 0.099 0.901
46 H 0.099 0.901
47 H 0.094 0.906
48 H 0.066 0.934
49 H 0.074 0.926
50 H 0.049 0.951
51 H 0.273 0.727
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 15.553 25.163 -9.951 31.210
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.142 4.142
2 C -0.040 4.040
3 C -0.329 4.329
4 C 0.039 3.961
5 N -0.287 5.287
6 C 0.413 3.587
7 O -0.475 6.475
8 N -0.370 5.370
9 C 0.056 3.944
10 H 0.102 0.898
11 C -0.182 4.182
12 C -0.085 4.085
13 N -0.246 5.246
14 C -0.046 4.046
15 C -0.175 4.175
16 C -0.219 4.219
17 C -0.212 4.212
18 C -0.083 4.083
19 N -0.188 5.188
20 N -0.126 5.126
21 C 0.122 3.878
22 C -0.589 4.589
23 H 0.041 0.959
24 C -0.178 4.178
25 N -0.576 5.576
26 Si 0.772 3.228
27 H -0.191 1.191
28 H -0.199 1.199
29 H -0.156 1.156
30 H 0.096 0.904
31 H 0.126 0.874
32 H 0.097 0.903
33 H 0.183 0.817
34 H 0.259 0.741
35 H 0.251 0.749
36 H 0.090 0.910
37 H 0.084 0.916
38 H 0.076 0.924
39 H 0.103 0.897
40 H 0.061 0.939
41 H 0.102 0.898
42 H 0.123 0.877
43 H 0.114 0.886
44 H 0.114 0.886
45 H 0.117 0.883
46 H 0.117 0.883
47 H 0.112 0.888
48 H 0.084 0.916
49 H 0.092 0.908
50 H 0.067 0.933
51 H 0.082 0.918
Dipole moment (debyes) X Y Z Total
from point charges 14.892 24.709 -10.136 30.579
hybrid contribution 0.801 -1.065 0.774 1.541
sum 15.693 23.644 -9.362 29.882
Atomic orbital electron populations
1.20501 0.85226 1.04695 1.03785 1.21736 0.96675 0.86374 0.99214
1.21426 0.90045 0.99964 1.21417 1.18941 0.88091 0.88913 1.00155
1.41376 1.07088 1.03796 1.76480 1.15763 0.85313 0.80047 0.77594
1.90849 1.25230 1.73854 1.57524 1.44819 1.07207 1.05961 1.79038
1.21707 0.99409 0.76673 0.96624 0.89757 1.22814 1.01177 0.97171
0.97060 1.22811 0.98385 0.97380 0.89924 1.64750 1.23337 1.18737
1.17782 1.21876 0.87990 0.99937 0.94841 1.22238 0.91038 1.06111
0.98069 1.23119 1.01016 0.94478 1.03298 1.23015 0.99634 0.94795
1.03802 1.23302 0.95041 0.88838 1.01083 1.77162 0.99748 1.09736
1.32134 1.48407 1.01788 1.07032 1.55342 1.19780 0.96440 0.74662
0.96967 1.21261 1.47678 0.98743 0.91189 0.95884 1.25834 0.93720
0.99275 0.98992 1.70036 1.46986 1.19194 1.21387 0.85671 0.79027
0.78760 0.79294 1.19067 1.19939 1.15643 0.90444 0.87428 0.90347
0.81673 0.74099 0.74888 0.90988 0.91601 0.92441 0.89688 0.93906
0.89783 0.87729 0.88645 0.88554 0.88294 0.88269 0.88796 0.91628
0.90804 0.93343 0.91757
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -2.74 10.11 71.23 0.72 -2.02 16
2 C 0.09 3.74 6.92 41.39 0.29 4.03 16
3 C -0.30 -12.26 9.52 22.11 0.21 -12.05 16
4 C 0.29 11.93 8.11 133.31 1.08 13.01 16
5 N -0.64 -19.07 5.46 -321.23 -1.75 -20.82 16
6 C 0.71 20.11 8.53 179.05 1.53 21.63 16
7 O -0.60 -21.37 13.19 -3.99 -0.05 -21.43 16
8 N -0.71 -12.82 5.15 -452.06 -2.33 -15.15 16
9 C 0.16 2.78 3.35 46.20 0.15 2.94 16
10 H 0.08 1.87 7.69 -2.39 -0.02 1.85 16
11 C -0.14 -2.41 6.67 31.47 0.21 -2.20 16
12 C 0.04 0.56 6.70 86.45 0.58 1.14 16
13 N -0.52 -6.74 5.35 -883.00 -4.73 -11.46 16
14 C 0.08 0.83 5.12 86.30 0.44 1.27 16
15 C -0.16 -1.52 4.89 -10.79 -0.05 -1.57 16
16 C -0.18 -1.53 10.18 30.60 0.31 -1.22 16
17 C -0.17 -1.42 10.25 30.60 0.31 -1.10 16
18 C 0.05 0.55 5.34 86.65 0.46 1.01 16
19 N -0.36 -16.45 12.59 -54.43 -0.69 -17.13 16
20 N -0.34 -16.10 3.59 -338.45 -1.22 -17.31 16
21 C 0.24 11.55 5.06 85.63 0.43 11.99 16
22 C -0.55 -31.79 9.94 25.60 0.25 -31.53 16
23 H 0.02 1.54 8.06 -2.91 -0.02 1.52 16
24 C 0.02 1.21 5.47 84.66 0.46 1.67 16
25 N -0.94 -57.23 13.96 21.45 0.30 -56.93 16
26 Si 0.95 40.87 27.47 68.60 1.88 42.75 16
27 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16
28 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16
29 H -0.23 -8.83 6.54 99.48 0.65 -8.18 16
30 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16
31 H 0.11 2.76 8.14 -2.38 -0.02 2.74 16
32 H 0.08 2.41 7.07 -2.39 -0.02 2.39 16
33 H 0.17 6.69 5.91 -2.91 -0.02 6.68 16
34 H 0.42 9.73 8.84 -92.71 -0.82 8.91 16
35 H 0.41 4.66 8.54 -92.71 -0.79 3.87 16
36 H 0.07 1.23 8.05 -2.39 -0.02 1.21 16
37 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16
38 H 0.06 0.63 7.66 -2.39 -0.02 0.61 16
39 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16
40 H 0.04 0.40 7.70 -2.39 -0.02 0.38 16
41 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16
42 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16
43 H 0.10 0.74 8.03 -2.39 -0.02 0.72 16
44 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16
45 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16
46 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16
47 H 0.09 1.12 7.96 -2.39 -0.02 1.10 16
48 H 0.07 0.62 7.89 -2.38 -0.02 0.60 16
49 H 0.07 3.16 6.10 -2.39 -0.01 3.14 16
50 H 0.05 2.27 7.57 -2.38 -0.02 2.25 16
51 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16
Total: -1.00 -76.35 412.33 -1.89 -78.25
By element:
Atomic # 1 Polarization: 32.96 SS G_CDS: -0.71 Total: 32.25 kcal
Atomic # 6 Polarization: -0.41 SS G_CDS: 7.40 Total: 6.99 kcal
Atomic # 7 Polarization: -128.40 SS G_CDS: -10.41 Total: -138.81 kcal
Atomic # 8 Polarization: -21.37 SS G_CDS: -0.05 Total: -21.43 kcal
Atomic # 14 Polarization: 40.87 SS G_CDS: 1.88 Total: 42.75 kcal
Total: -76.35 -1.89 -78.25 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000611481746.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 145.321 kcal
(2) G-P(sol) polarization free energy of solvation -76.355 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.966 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.894 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.249 kcal
(6) G-S(sol) free energy of system = (1) + (5) 67.072 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.16 seconds