Wall clock time and date at job start Wed Apr 1 2020 04:51:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35240 * 126.06927 * 2 1 4 4 C 1.40398 * 107.86526 * 179.97438 * 3 2 1 5 5 N 1.40195 * 125.97411 * 179.97438 * 4 3 2 6 6 C 1.34777 * 119.99814 * 359.97438 * 5 4 3 7 7 O 1.21590 * 120.00037 * 359.97438 * 6 5 4 8 8 N 1.34777 * 119.99870 * 180.02562 * 6 5 4 9 9 C 1.46506 * 119.99885 * 179.97438 * 8 6 5 10 10 H 1.08998 * 110.27672 * 32.91055 * 9 8 6 11 11 C 1.54592 * 110.30716 * 270.71157 * 9 8 6 12 12 C 1.54943 * 102.92294 * 219.12611 * 11 9 8 13 13 N 1.48534 * 103.22501 * 37.41582 * 12 11 9 14 14 C 1.46893 * 110.99957 * 200.28230 * 13 12 11 15 15 C 1.53001 * 109.47154 * 307.39376 * 14 13 12 16 16 C 1.53001 * 117.50064 * 243.62598 * 15 14 13 17 17 C 1.52995 * 117.50046 * 175.00043 * 15 14 13 18 18 C 1.47901 * 105.81910 * 320.79337 * 13 12 11 19 19 N 1.31208 * 108.05659 * 359.73924 * 4 3 2 20 20 N 1.34957 * 126.06716 * 179.97438 * 2 1 3 21 21 C 1.46500 * 125.98125 * 359.97438 * 20 2 1 22 22 C 1.50696 * 109.47188 * 89.99943 * 21 20 2 23 23 H 1.08003 * 120.00087 * 0.02562 * 22 21 20 24 24 C 1.37875 * 119.99956 * 179.97438 * 22 21 20 25 25 N 1.31510 * 120.00308 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 119.99908 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.46845 * 60.00735 * 26 24 22 28 28 H 1.48503 * 109.47399 * 180.02562 * 26 24 22 29 29 H 1.48498 * 109.47295 * 300.00832 * 26 24 22 30 30 H 1.09008 * 109.46962 * 270.02815 * 1 2 3 31 31 H 1.08999 * 109.47258 * 30.02308 * 1 2 3 32 32 H 1.08999 * 109.47434 * 150.02473 * 1 2 3 33 33 H 1.07996 * 126.07056 * 0.02562 * 3 2 1 34 34 H 0.96997 * 120.00434 * 180.02562 * 5 4 3 35 35 H 0.96996 * 120.00572 * 359.97438 * 8 6 5 36 36 H 1.09004 * 110.72730 * 337.48475 * 11 9 8 37 37 H 1.09005 * 110.72341 * 100.76803 * 11 9 8 38 38 H 1.08997 * 110.66664 * 278.98572 * 12 11 9 39 39 H 1.08992 * 110.81143 * 155.91421 * 12 11 9 40 40 H 1.08997 * 109.47519 * 67.39650 * 14 13 12 41 41 H 1.09003 * 109.47176 * 187.39631 * 14 13 12 42 42 H 1.08997 * 115.54444 * 29.33353 * 15 14 13 43 43 H 1.08997 * 117.49856 * 359.97438 * 16 15 14 44 44 H 1.08995 * 117.49725 * 145.02313 * 16 15 14 45 45 H 1.09006 * 117.50222 * 214.98100 * 17 15 14 46 46 H 1.09004 * 117.50536 * 0.02562 * 17 15 14 47 47 H 1.09001 * 109.91975 * 265.97372 * 18 13 12 48 48 H 1.09002 * 109.91891 * 144.68521 * 18 13 12 49 49 H 1.09001 * 109.47049 * 330.00161 * 21 20 2 50 50 H 1.09004 * 109.47137 * 210.00655 * 21 20 2 51 51 H 0.97000 * 119.99806 * 0.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0932 0.0000 4 6 3.6370 0.6545 0.0006 5 7 4.7737 1.4751 0.0003 6 6 4.6370 2.8159 -0.0012 7 8 3.5277 3.3139 -0.0027 8 7 5.7298 3.6047 -0.0020 9 6 5.5811 5.0622 -0.0042 10 1 4.6887 5.3517 0.5506 11 6 5.5092 5.5920 -1.4547 12 6 6.3345 6.9016 -1.3866 13 7 7.4391 6.5591 -0.4545 14 6 8.0456 7.7715 0.1111 15 6 8.4420 8.7198 -1.0222 16 6 9.9301 9.0302 -1.1956 17 6 8.9867 10.0958 -0.6340 18 6 6.8288 5.7276 0.6056 19 7 3.6336 -0.6575 0.0066 20 7 2.3015 -1.0909 0.0005 21 6 1.8500 -2.4846 0.0016 22 6 1.6947 -2.9635 -1.4187 23 1 1.9111 -2.2965 -2.2402 24 6 1.2773 -4.2533 -1.6696 25 7 1.0142 -5.0657 -0.6694 26 14 1.0854 -4.8472 -3.4303 27 1 2.3914 -4.7502 -4.1304 28 1 0.6276 -6.2599 -3.4292 29 1 0.0843 -4.0034 -4.1310 30 1 -0.3633 0.0005 1.0277 31 1 -0.3634 0.8898 -0.5142 32 1 -0.3634 -0.8902 -0.5134 33 1 1.9720 2.1211 0.0004 34 1 5.6586 1.0779 0.0004 35 1 6.6147 3.2075 -0.0012 36 1 5.9653 4.8842 -2.1470 37 1 4.4776 5.8005 -1.7385 38 1 5.7313 7.7160 -0.9854 39 1 6.7274 7.1632 -2.3690 40 1 7.3271 8.2664 0.7644 41 1 8.9319 7.5006 0.6850 42 1 7.8325 8.6557 -1.9235 43 1 10.6267 8.5592 -0.5021 44 1 10.2999 9.1704 -2.2113 45 1 8.7359 10.9371 -1.2802 46 1 9.0630 10.3255 0.4288 47 1 6.5404 6.3545 1.4494 48 1 7.5351 4.9640 0.9314 49 1 0.8915 -2.5555 0.5159 50 1 2.5848 -3.1042 0.5158 51 1 1.1135 -4.7572 0.2449 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611481747.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:04 Heat of formation + Delta-G solvation = 83.626405 kcal Electronic energy + Delta-G solvation = -29552.353002 eV Core-core repulsion = 25489.425286 eV Total energy + Delta-G solvation = -4062.927716 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.88185 -40.15239 -39.16513 -37.43060 -34.96709 -34.43295 -33.64468 -31.63293 -31.10998 -30.54867 -28.92671 -26.41835 -26.39468 -25.84772 -23.21921 -22.84592 -22.45994 -22.02141 -20.95340 -20.27233 -19.91159 -19.75279 -17.99022 -17.08673 -16.86801 -16.72611 -15.96187 -15.55251 -15.36758 -15.14003 -14.94185 -14.47091 -14.41626 -14.22316 -14.08010 -13.79884 -13.22350 -13.04017 -12.93371 -12.62677 -12.55620 -12.36880 -12.29887 -12.04708 -11.97412 -11.79416 -11.66703 -11.50469 -11.44709 -11.20877 -11.04076 -10.76232 -10.74860 -10.51367 -10.40289 -10.16929 -10.05985 -9.71699 -9.30209 -9.00886 -8.84863 -8.58344 -7.96780 -7.42843 -6.58099 -4.34364 2.32865 2.59108 3.04796 3.21537 3.36863 3.38405 3.50005 3.57814 3.61030 3.78487 4.05242 4.20413 4.30820 4.40655 4.44941 4.48826 4.54815 4.77407 4.84076 4.90416 5.00458 5.11570 5.14378 5.17194 5.19520 5.25509 5.32957 5.42192 5.44895 5.51073 5.63963 5.65501 5.69447 5.76743 5.84334 5.89395 6.04286 6.16278 6.28518 6.39107 6.42906 6.52185 6.55483 6.56746 6.69308 6.85268 7.06379 7.47750 7.69654 7.88410 7.91048 8.31474 8.56849 8.58011 8.63760 9.34638 10.78068 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.024871 B = 0.001630 C = 0.001596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.545575 B =17176.967499 C =17537.598475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.092 3.908 3 C -0.287 4.287 4 C 0.285 3.715 5 N -0.644 5.644 6 C 0.714 3.286 7 O -0.567 6.567 8 N -0.735 5.735 9 C 0.158 3.842 10 H 0.099 0.901 11 C -0.136 4.136 12 C 0.035 3.965 13 N -0.512 5.512 14 C 0.077 3.923 15 C -0.154 4.154 16 C -0.173 4.173 17 C -0.182 4.182 18 C 0.029 3.971 19 N -0.324 5.324 20 N -0.317 5.317 21 C 0.250 3.750 22 C -0.615 4.615 23 H 0.059 0.941 24 C 0.026 3.974 25 N -0.902 5.902 26 Si 1.075 2.925 27 H -0.286 1.286 28 H -0.279 1.279 29 H -0.285 1.285 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.162 0.838 34 H 0.407 0.593 35 H 0.399 0.601 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.049 0.951 39 H 0.085 0.915 40 H 0.041 0.959 41 H 0.078 0.922 42 H 0.110 0.890 43 H 0.094 0.906 44 H 0.093 0.907 45 H 0.094 0.906 46 H 0.093 0.907 47 H 0.058 0.942 48 H 0.087 0.913 49 H 0.043 0.957 50 H 0.042 0.958 51 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.586 27.680 2.177 30.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.040 4.040 3 C -0.318 4.318 4 C 0.031 3.969 5 N -0.293 5.293 6 C 0.413 3.587 7 O -0.442 6.442 8 N -0.392 5.392 9 C 0.052 3.948 10 H 0.117 0.883 11 C -0.176 4.176 12 C -0.093 4.093 13 N -0.237 5.237 14 C -0.051 4.051 15 C -0.173 4.173 16 C -0.210 4.210 17 C -0.219 4.219 18 C -0.100 4.100 19 N -0.154 5.154 20 N -0.099 5.099 21 C 0.132 3.868 22 C -0.653 4.653 23 H 0.077 0.923 24 C -0.179 4.179 25 N -0.537 5.537 26 Si 0.902 3.098 27 H -0.212 1.212 28 H -0.205 1.205 29 H -0.211 1.211 30 H 0.089 0.911 31 H 0.095 0.905 32 H 0.100 0.900 33 H 0.179 0.821 34 H 0.241 0.759 35 H 0.233 0.767 36 H 0.100 0.900 37 H 0.099 0.901 38 H 0.067 0.933 39 H 0.104 0.896 40 H 0.059 0.941 41 H 0.096 0.904 42 H 0.128 0.872 43 H 0.113 0.887 44 H 0.111 0.889 45 H 0.113 0.887 46 H 0.112 0.888 47 H 0.076 0.924 48 H 0.106 0.894 49 H 0.061 0.939 50 H 0.059 0.941 51 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 13.246 25.378 1.033 28.645 hybrid contribution 0.472 2.070 1.325 2.502 sum 13.718 27.447 2.358 30.775 Atomic orbital electron populations 1.20375 0.87948 1.03914 1.02446 1.21055 0.94888 0.87056 1.00959 1.21243 0.89678 0.99817 1.21068 1.18655 0.86630 0.89192 1.02412 1.41397 1.07565 1.03757 1.76625 1.15633 0.84818 0.80364 0.77871 1.90866 1.23552 1.73451 1.56307 1.45115 1.07636 1.05814 1.80603 1.21618 0.98321 0.78309 0.96563 0.88320 1.22990 1.00795 0.96743 0.97042 1.23257 0.91430 0.96807 0.97817 1.64815 1.27779 1.16698 1.14369 1.21897 0.99351 0.89087 0.94772 1.22372 0.97477 0.96651 1.00777 1.22999 0.92663 1.02950 1.02406 1.22983 1.04719 0.92466 1.01771 1.23164 0.95428 0.97676 0.93721 1.77250 0.99661 1.08451 1.30075 1.48664 1.01041 1.07260 1.52930 1.19687 0.94953 0.72727 0.99464 1.22185 1.51175 1.00879 0.91097 0.92292 1.25897 0.93065 0.92551 1.06399 1.70839 1.44836 1.37951 1.00087 0.83447 0.76799 0.76334 0.73243 1.21215 1.20454 1.21132 0.91140 0.90479 0.90044 0.82107 0.75887 0.76672 0.90033 0.90100 0.93299 0.89641 0.94077 0.90396 0.87224 0.88707 0.88855 0.88739 0.88837 0.92420 0.89430 0.93934 0.94056 0.92171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.55 9.89 36.01 0.36 -1.19 16 2 C 0.09 1.97 6.92 -82.29 -0.57 1.40 16 3 C -0.29 -6.02 9.52 -39.84 -0.38 -6.40 16 4 C 0.28 5.89 8.11 -154.37 -1.25 4.64 16 5 N -0.64 -10.08 5.46 -15.51 -0.08 -10.16 16 6 C 0.71 10.42 8.53 -86.92 -0.74 9.67 16 7 O -0.57 -10.16 13.12 5.29 0.07 -10.09 16 8 N -0.74 -7.26 5.06 -57.34 -0.29 -7.55 16 9 C 0.16 1.40 3.34 -66.57 -0.22 1.18 16 10 H 0.10 1.02 7.56 -51.93 -0.39 0.63 16 11 C -0.14 -1.17 6.78 -24.87 -0.17 -1.34 16 12 C 0.03 0.24 5.36 -1.89 -0.01 0.23 16 13 N -0.51 -3.64 5.40 -230.46 -1.24 -4.88 16 14 C 0.08 0.47 5.31 -3.83 -0.02 0.45 16 15 C -0.15 -0.90 5.60 -90.62 -0.51 -1.41 16 16 C -0.17 -0.94 10.18 -26.73 -0.27 -1.21 16 17 C -0.18 -0.91 10.25 -26.73 -0.27 -1.18 16 18 C 0.03 0.20 6.47 -2.75 -0.02 0.18 16 19 N -0.32 -7.60 12.59 31.44 0.40 -7.20 16 20 N -0.32 -7.65 3.59 -58.33 -0.21 -7.86 16 21 C 0.25 6.45 5.12 -5.20 -0.03 6.42 16 22 C -0.61 -17.25 9.39 -34.44 -0.32 -17.58 16 23 H 0.06 1.72 7.81 -52.48 -0.41 1.31 16 24 C 0.03 0.73 5.46 -17.82 -0.10 0.63 16 25 N -0.90 -26.19 13.65 55.43 0.76 -25.43 16 26 Si 1.07 24.78 29.90 -169.99 -5.08 19.69 16 27 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 28 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 29 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 30 H 0.07 1.08 8.14 -51.92 -0.42 0.66 16 31 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.08 1.53 7.71 -51.93 -0.40 1.13 16 33 H 0.16 3.30 5.91 -52.49 -0.31 2.99 16 34 H 0.41 5.09 8.84 -40.82 -0.36 4.73 16 35 H 0.40 2.92 8.37 -40.82 -0.34 2.58 16 36 H 0.08 0.77 8.06 -51.93 -0.42 0.35 16 37 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.05 0.32 8.02 -51.93 -0.42 -0.09 16 39 H 0.09 0.56 7.08 -51.93 -0.37 0.19 16 40 H 0.04 0.24 7.81 -51.93 -0.41 -0.16 16 41 H 0.08 0.46 7.88 -51.93 -0.41 0.05 16 42 H 0.11 0.66 6.14 -51.93 -0.32 0.35 16 43 H 0.09 0.49 8.03 -51.93 -0.42 0.07 16 44 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.06 0.36 7.57 -51.93 -0.39 -0.03 16 48 H 0.09 0.55 7.65 -51.93 -0.40 0.16 16 49 H 0.04 1.07 7.51 -51.93 -0.39 0.68 16 50 H 0.04 1.12 8.01 -51.93 -0.42 0.70 16 51 H 0.27 7.65 7.22 -40.82 -0.29 7.36 16 LS Contribution 412.33 15.07 6.21 6.21 Total: -1.00 -33.67 412.33 -12.19 -45.86 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: -8.19 Total: 6.91 kcal Atomic # 6 Polarization: -0.98 SS G_CDS: -4.53 Total: -5.51 kcal Atomic # 7 Polarization: -62.41 SS G_CDS: -0.68 Total: -63.08 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: 0.07 Total: -10.09 kcal Atomic # 14 Polarization: 24.78 SS G_CDS: -5.08 Total: 19.69 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -33.67 -12.19 -45.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611481747.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.488 kcal (2) G-P(sol) polarization free energy of solvation -33.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.861 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds