Wall clock time and date at job start Wed Apr 1 2020 04:51:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35240 * 126.06927 * 2 1 4 4 C 1.40398 * 107.86526 * 179.97438 * 3 2 1 5 5 N 1.40195 * 125.97411 * 179.97438 * 4 3 2 6 6 C 1.34777 * 119.99814 * 359.97438 * 5 4 3 7 7 O 1.21590 * 120.00037 * 359.97438 * 6 5 4 8 8 N 1.34777 * 119.99870 * 180.02562 * 6 5 4 9 9 C 1.46506 * 119.99885 * 179.97438 * 8 6 5 10 10 H 1.08998 * 110.27672 * 32.91055 * 9 8 6 11 11 C 1.54592 * 110.30716 * 270.71157 * 9 8 6 12 12 C 1.54943 * 102.92294 * 219.12611 * 11 9 8 13 13 N 1.48534 * 103.22501 * 37.41582 * 12 11 9 14 14 C 1.46893 * 110.99957 * 200.28230 * 13 12 11 15 15 C 1.53001 * 109.47154 * 307.39376 * 14 13 12 16 16 C 1.53001 * 117.50064 * 243.62598 * 15 14 13 17 17 C 1.52995 * 117.50046 * 175.00043 * 15 14 13 18 18 C 1.47901 * 105.81910 * 320.79337 * 13 12 11 19 19 N 1.31208 * 108.05659 * 359.73924 * 4 3 2 20 20 N 1.34957 * 126.06716 * 179.97438 * 2 1 3 21 21 C 1.46500 * 125.98125 * 359.97438 * 20 2 1 22 22 C 1.50696 * 109.47188 * 89.99943 * 21 20 2 23 23 H 1.08003 * 120.00087 * 0.02562 * 22 21 20 24 24 C 1.37875 * 119.99956 * 179.97438 * 22 21 20 25 25 N 1.31510 * 120.00308 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 119.99908 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.46845 * 60.00735 * 26 24 22 28 28 H 1.48503 * 109.47399 * 180.02562 * 26 24 22 29 29 H 1.48498 * 109.47295 * 300.00832 * 26 24 22 30 30 H 1.09008 * 109.46962 * 270.02815 * 1 2 3 31 31 H 1.08999 * 109.47258 * 30.02308 * 1 2 3 32 32 H 1.08999 * 109.47434 * 150.02473 * 1 2 3 33 33 H 1.07996 * 126.07056 * 0.02562 * 3 2 1 34 34 H 0.96997 * 120.00434 * 180.02562 * 5 4 3 35 35 H 0.96996 * 120.00572 * 359.97438 * 8 6 5 36 36 H 1.09004 * 110.72730 * 337.48475 * 11 9 8 37 37 H 1.09005 * 110.72341 * 100.76803 * 11 9 8 38 38 H 1.08997 * 110.66664 * 278.98572 * 12 11 9 39 39 H 1.08992 * 110.81143 * 155.91421 * 12 11 9 40 40 H 1.08997 * 109.47519 * 67.39650 * 14 13 12 41 41 H 1.09003 * 109.47176 * 187.39631 * 14 13 12 42 42 H 1.08997 * 115.54444 * 29.33353 * 15 14 13 43 43 H 1.08997 * 117.49856 * 359.97438 * 16 15 14 44 44 H 1.08995 * 117.49725 * 145.02313 * 16 15 14 45 45 H 1.09006 * 117.50222 * 214.98100 * 17 15 14 46 46 H 1.09004 * 117.50536 * 0.02562 * 17 15 14 47 47 H 1.09001 * 109.91975 * 265.97372 * 18 13 12 48 48 H 1.09002 * 109.91891 * 144.68521 * 18 13 12 49 49 H 1.09001 * 109.47049 * 330.00161 * 21 20 2 50 50 H 1.09004 * 109.47137 * 210.00655 * 21 20 2 51 51 H 0.97000 * 119.99806 * 0.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0932 0.0000 4 6 3.6370 0.6545 0.0006 5 7 4.7737 1.4751 0.0003 6 6 4.6370 2.8159 -0.0012 7 8 3.5277 3.3139 -0.0027 8 7 5.7298 3.6047 -0.0020 9 6 5.5811 5.0622 -0.0042 10 1 4.6887 5.3517 0.5506 11 6 5.5092 5.5920 -1.4547 12 6 6.3345 6.9016 -1.3866 13 7 7.4391 6.5591 -0.4545 14 6 8.0456 7.7715 0.1111 15 6 8.4420 8.7198 -1.0222 16 6 9.9301 9.0302 -1.1956 17 6 8.9867 10.0958 -0.6340 18 6 6.8288 5.7276 0.6056 19 7 3.6336 -0.6575 0.0066 20 7 2.3015 -1.0909 0.0005 21 6 1.8500 -2.4846 0.0016 22 6 1.6947 -2.9635 -1.4187 23 1 1.9111 -2.2965 -2.2402 24 6 1.2773 -4.2533 -1.6696 25 7 1.0142 -5.0657 -0.6694 26 14 1.0854 -4.8472 -3.4303 27 1 2.3914 -4.7502 -4.1304 28 1 0.6276 -6.2599 -3.4292 29 1 0.0843 -4.0034 -4.1310 30 1 -0.3633 0.0005 1.0277 31 1 -0.3634 0.8898 -0.5142 32 1 -0.3634 -0.8902 -0.5134 33 1 1.9720 2.1211 0.0004 34 1 5.6586 1.0779 0.0004 35 1 6.6147 3.2075 -0.0012 36 1 5.9653 4.8842 -2.1470 37 1 4.4776 5.8005 -1.7385 38 1 5.7313 7.7160 -0.9854 39 1 6.7274 7.1632 -2.3690 40 1 7.3271 8.2664 0.7644 41 1 8.9319 7.5006 0.6850 42 1 7.8325 8.6557 -1.9235 43 1 10.6267 8.5592 -0.5021 44 1 10.2999 9.1704 -2.2113 45 1 8.7359 10.9371 -1.2802 46 1 9.0630 10.3255 0.4288 47 1 6.5404 6.3545 1.4494 48 1 7.5351 4.9640 0.9314 49 1 0.8915 -2.5555 0.5159 50 1 2.5848 -3.1042 0.5158 51 1 1.1135 -4.7572 0.2449 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611481747.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:03 Heat of formation + Delta-G solvation = 61.477913 kcal Electronic energy + Delta-G solvation = -29553.313433 eV Core-core repulsion = 25489.425286 eV Total energy + Delta-G solvation = -4063.888147 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.39561 -41.25077 -40.01378 -37.97770 -36.50653 -35.57319 -35.32951 -33.08499 -32.59350 -31.68687 -29.63478 -28.13779 -27.92248 -26.66958 -25.13090 -23.47309 -23.23919 -22.85700 -21.77904 -21.36980 -21.29532 -20.75038 -19.46477 -18.92557 -17.93556 -17.39336 -17.26885 -16.80834 -16.64285 -16.00361 -15.91558 -15.66553 -15.63937 -15.42607 -15.12645 -14.91702 -14.66306 -14.41980 -13.89027 -13.81873 -13.73689 -13.60287 -13.48335 -13.35759 -13.17621 -12.82798 -12.77067 -12.57255 -12.38798 -12.26701 -12.01617 -11.95294 -11.94435 -11.85714 -11.63390 -11.19171 -11.15664 -11.00991 -10.92560 -10.70264 -10.22708 -9.63498 -9.38340 -9.16724 -8.75487 -6.58641 0.94344 1.04869 1.51267 1.57253 1.61107 1.78839 1.99590 2.33939 2.48429 2.76187 2.99764 3.05881 3.14151 3.45777 3.69407 3.77836 3.91497 4.03429 4.04708 4.09560 4.18278 4.26653 4.33161 4.38922 4.46254 4.54189 4.61061 4.68507 4.69677 4.69788 4.71357 4.76626 4.81498 4.82367 4.89525 4.95650 5.01330 5.06302 5.07243 5.13578 5.17314 5.28217 5.33721 5.51755 5.57004 5.78496 5.82122 5.86659 5.95237 6.03329 6.25664 6.40067 6.68613 7.07041 7.18234 7.39674 8.56366 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.024871 B = 0.001630 C = 0.001596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.545575 B =17176.967499 C =17537.598475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.087 3.913 3 C -0.295 4.295 4 C 0.296 3.704 5 N -0.636 5.636 6 C 0.713 3.287 7 O -0.599 6.599 8 N -0.712 5.712 9 C 0.156 3.844 10 H 0.085 0.915 11 C -0.135 4.135 12 C 0.042 3.958 13 N -0.519 5.519 14 C 0.079 3.921 15 C -0.162 4.162 16 C -0.177 4.177 17 C -0.177 4.177 18 C 0.036 3.964 19 N -0.361 5.361 20 N -0.343 5.343 21 C 0.263 3.737 22 C -0.627 4.627 23 H 0.042 0.958 24 C -0.014 4.014 25 N -0.919 5.919 26 Si 1.118 2.882 27 H -0.278 1.278 28 H -0.274 1.274 29 H -0.267 1.267 30 H 0.094 0.906 31 H 0.103 0.897 32 H 0.064 0.936 33 H 0.168 0.832 34 H 0.421 0.579 35 H 0.414 0.586 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.054 0.946 39 H 0.090 0.910 40 H 0.044 0.956 41 H 0.081 0.919 42 H 0.106 0.894 43 H 0.096 0.904 44 H 0.094 0.906 45 H 0.099 0.901 46 H 0.099 0.901 47 H 0.067 0.933 48 H 0.098 0.902 49 H 0.047 0.953 50 H 0.020 0.980 51 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.370 29.473 1.743 32.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.043 4.043 3 C -0.326 4.326 4 C 0.040 3.960 5 N -0.288 5.288 6 C 0.413 3.587 7 O -0.477 6.477 8 N -0.369 5.369 9 C 0.050 3.950 10 H 0.103 0.897 11 C -0.174 4.174 12 C -0.086 4.086 13 N -0.244 5.244 14 C -0.049 4.049 15 C -0.181 4.181 16 C -0.214 4.214 17 C -0.214 4.214 18 C -0.092 4.092 19 N -0.192 5.192 20 N -0.125 5.125 21 C 0.144 3.856 22 C -0.665 4.665 23 H 0.060 0.940 24 C -0.214 4.214 25 N -0.555 5.555 26 Si 0.939 3.061 27 H -0.203 1.203 28 H -0.199 1.199 29 H -0.192 1.192 30 H 0.112 0.888 31 H 0.122 0.878 32 H 0.083 0.917 33 H 0.186 0.814 34 H 0.259 0.741 35 H 0.252 0.748 36 H 0.092 0.908 37 H 0.089 0.911 38 H 0.072 0.928 39 H 0.108 0.892 40 H 0.062 0.938 41 H 0.099 0.901 42 H 0.124 0.876 43 H 0.115 0.885 44 H 0.113 0.887 45 H 0.117 0.883 46 H 0.117 0.883 47 H 0.086 0.914 48 H 0.116 0.884 49 H 0.064 0.936 50 H 0.038 0.962 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 14.094 27.223 0.618 30.661 hybrid contribution 0.309 1.676 1.503 2.273 sum 14.403 28.899 2.122 32.359 Atomic orbital electron populations 1.20500 0.85376 1.04345 1.04120 1.21748 0.96657 0.86376 0.99521 1.21415 0.89910 0.99883 1.21373 1.18948 0.88173 0.88820 1.00048 1.41398 1.07000 1.03870 1.76488 1.15785 0.85387 0.79997 0.77560 1.90836 1.25228 1.73842 1.57776 1.44994 1.07140 1.05962 1.78770 1.21729 0.99031 0.77333 0.96888 0.89674 1.22923 1.00469 0.97524 0.96494 1.23197 0.91237 0.95898 0.98249 1.64841 1.27685 1.17338 1.14492 1.21904 0.99436 0.88690 0.94879 1.22369 0.97716 0.97280 1.00687 1.23053 0.92516 1.03233 1.02632 1.23040 1.03962 0.92230 1.02213 1.23119 0.94487 0.97888 0.93749 1.77170 0.99785 1.09913 1.32329 1.48486 1.01824 1.07004 1.55211 1.19315 0.94379 0.73828 0.98127 1.22338 1.51391 1.01045 0.91704 0.93986 1.27268 0.92030 0.92692 1.09442 1.70939 1.46060 1.38332 1.00147 0.82905 0.77594 0.76392 0.69215 1.20331 1.19904 1.19208 0.88792 0.87827 0.91668 0.81433 0.74135 0.74815 0.90801 0.91145 0.92765 0.89154 0.93755 0.90054 0.87573 0.88520 0.88749 0.88268 0.88287 0.91436 0.88426 0.93552 0.96211 0.93014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.90 9.89 71.24 0.70 -2.20 16 2 C 0.09 3.73 6.92 41.39 0.29 4.02 16 3 C -0.29 -12.28 9.52 22.10 0.21 -12.07 16 4 C 0.30 12.18 8.11 133.31 1.08 13.27 16 5 N -0.64 -19.38 5.46 -321.23 -1.75 -21.13 16 6 C 0.71 20.07 8.53 179.05 1.53 21.59 16 7 O -0.60 -21.11 13.12 -4.00 -0.05 -21.16 16 8 N -0.71 -12.92 5.06 -453.60 -2.30 -15.22 16 9 C 0.16 2.54 3.34 45.87 0.15 2.69 16 10 H 0.09 1.68 7.56 -2.39 -0.02 1.66 16 11 C -0.13 -2.18 6.78 31.80 0.22 -1.96 16 12 C 0.04 0.52 5.36 86.65 0.46 0.98 16 13 N -0.52 -6.31 5.40 -883.03 -4.76 -11.07 16 14 C 0.08 0.80 5.31 86.30 0.46 1.26 16 15 C -0.16 -1.61 5.60 -10.79 -0.06 -1.67 16 16 C -0.18 -1.64 10.18 30.60 0.31 -1.33 16 17 C -0.18 -1.45 10.25 30.59 0.31 -1.14 16 18 C 0.04 0.41 6.47 86.45 0.56 0.97 16 19 N -0.36 -17.21 12.59 -54.44 -0.69 -17.90 16 20 N -0.34 -16.86 3.59 -338.46 -1.22 -18.07 16 21 C 0.26 13.95 5.12 85.63 0.44 14.39 16 22 C -0.63 -35.78 9.39 25.60 0.24 -35.54 16 23 H 0.04 2.50 7.81 -2.91 -0.02 2.47 16 24 C -0.01 -0.78 5.46 84.65 0.46 -0.32 16 25 N -0.92 -53.84 13.65 21.45 0.29 -53.55 16 26 Si 1.12 49.40 29.90 68.60 2.05 51.46 16 27 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 28 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 29 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 30 H 0.09 2.74 8.14 -2.38 -0.02 2.72 16 31 H 0.10 2.93 8.14 -2.39 -0.02 2.91 16 32 H 0.06 2.43 7.71 -2.39 -0.02 2.42 16 33 H 0.17 6.77 5.91 -2.91 -0.02 6.75 16 34 H 0.42 10.08 8.84 -92.71 -0.82 9.26 16 35 H 0.41 5.14 8.37 -92.71 -0.78 4.36 16 36 H 0.07 1.32 8.06 -2.39 -0.02 1.30 16 37 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 38 H 0.05 0.63 8.02 -2.39 -0.02 0.61 16 39 H 0.09 1.05 7.08 -2.39 -0.02 1.03 16 40 H 0.04 0.43 7.81 -2.39 -0.02 0.41 16 41 H 0.08 0.78 7.88 -2.39 -0.02 0.76 16 42 H 0.11 1.13 6.14 -2.39 -0.01 1.11 16 43 H 0.10 0.85 8.03 -2.39 -0.02 0.83 16 44 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 45 H 0.10 0.72 8.14 -2.38 -0.02 0.70 16 46 H 0.10 0.70 8.14 -2.38 -0.02 0.68 16 47 H 0.07 0.68 7.57 -2.39 -0.02 0.67 16 48 H 0.10 0.96 7.65 -2.39 -0.02 0.94 16 49 H 0.05 2.39 7.51 -2.39 -0.02 2.37 16 50 H 0.02 1.12 8.01 -2.39 -0.02 1.10 16 51 H 0.26 15.21 7.22 -92.71 -0.67 14.54 16 Total: -1.00 -72.90 412.33 -1.59 -74.50 By element: Atomic # 1 Polarization: 29.75 SS G_CDS: -0.54 Total: 29.21 kcal Atomic # 6 Polarization: -4.43 SS G_CDS: 7.37 Total: 2.94 kcal Atomic # 7 Polarization: -126.52 SS G_CDS: -10.42 Total: -136.94 kcal Atomic # 8 Polarization: -21.11 SS G_CDS: -0.05 Total: -21.16 kcal Atomic # 14 Polarization: 49.40 SS G_CDS: 2.05 Total: 51.46 kcal Total: -72.90 -1.59 -74.50 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611481747.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.977 kcal (2) G-P(sol) polarization free energy of solvation -72.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.499 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds