Wall clock time and date at job start Wed Apr 1 2020 04:38:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46906 * 109.45990 * 2 1 4 4 C 1.47474 * 110.99812 * 208.53605 * 3 2 1 5 5 C 1.53513 * 87.93310 * 138.70034 * 4 3 2 6 6 C 1.47477 * 110.99668 * 304.50794 * 3 2 1 7 7 C 1.53040 * 109.46050 * 119.96802 * 2 1 3 8 8 C 1.53199 * 109.30938 * 58.66154 * 7 2 1 9 9 N 1.46921 * 108.77831 * 54.62819 * 8 7 2 10 10 C 1.34783 * 120.62560 * 126.37199 * 9 8 7 11 11 O 1.21592 * 119.99571 * 185.41528 * 10 9 8 12 12 N 1.34774 * 120.00171 * 5.41105 * 10 9 8 13 13 C 1.40198 * 119.99925 * 174.76430 * 12 10 9 14 14 C 1.40399 * 125.97262 * 359.97438 * 13 12 10 15 15 C 1.35243 * 107.86639 * 180.19363 * 14 13 12 16 16 N 1.34964 * 107.85722 * 359.63567 * 15 14 13 17 17 C 1.46500 * 125.97529 * 180.11463 * 16 15 14 18 18 C 1.50702 * 109.46897 * 125.26808 * 17 16 15 19 19 H 1.07997 * 119.99824 * 0.02562 * 18 17 16 20 20 C 1.37885 * 119.99952 * 180.02562 * 18 17 16 21 21 N 1.31510 * 120.00183 * 180.02562 * 20 18 17 22 22 Si 1.86799 * 120.00065 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47167 * 89.99735 * 22 20 18 24 24 H 1.48493 * 109.47213 * 210.00289 * 22 20 18 25 25 H 1.48503 * 109.47002 * 329.99964 * 22 20 18 26 26 N 1.31207 * 125.97169 * 179.97438 * 13 12 10 27 27 C 1.46923 * 118.74342 * 306.64743 * 9 8 7 28 28 C 1.52762 * 109.00721 * 53.30671 * 27 9 8 29 29 H 1.08994 * 109.47104 * 300.03207 * 1 2 3 30 30 H 1.09003 * 109.46978 * 60.02710 * 1 2 3 31 31 H 1.08999 * 109.46914 * 180.02562 * 1 2 3 32 32 H 1.09003 * 113.47813 * 253.46998 * 4 3 2 33 33 H 1.08999 * 113.48185 * 23.93781 * 4 3 2 34 34 H 1.08994 * 114.17370 * 220.32371 * 5 4 3 35 35 H 1.09004 * 114.16771 * 87.62280 * 5 4 3 36 36 H 1.09005 * 113.47913 * 336.06107 * 6 3 2 37 37 H 1.09004 * 113.47768 * 106.47375 * 6 3 2 38 38 H 1.08993 * 109.49958 * 298.70957 * 7 2 1 39 39 H 1.08998 * 109.50165 * 178.60446 * 7 2 1 40 40 H 1.09010 * 109.58148 * 294.84435 * 8 7 2 41 41 H 1.08997 * 109.70628 * 174.49411 * 8 7 2 42 42 H 0.96999 * 119.99902 * 354.76209 * 12 10 9 43 43 H 1.07993 * 126.06606 * 359.93164 * 14 13 12 44 44 H 1.08000 * 126.07289 * 179.77467 * 15 14 13 45 45 H 1.09000 * 109.47682 * 245.27033 * 17 16 15 46 46 H 1.09000 * 109.47326 * 5.27117 * 17 16 15 47 47 H 0.96998 * 120.00587 * 180.02562 * 21 20 18 48 48 H 1.08995 * 109.58510 * 173.13883 * 27 9 8 49 49 H 1.09001 * 109.58498 * 293.56968 * 27 9 8 50 50 H 1.09000 * 109.56664 * 185.55185 * 28 27 9 51 51 H 1.09004 * 109.36212 * 65.49764 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0194 1.3851 0.0000 4 6 3.3359 1.4805 -0.6577 5 6 2.8468 2.7734 -1.3252 6 6 1.4600 2.1432 -1.1346 7 6 2.0399 -0.7208 1.2500 8 6 1.4996 -2.1543 1.2640 9 7 1.8625 -2.8088 -0.0003 10 6 2.5164 -3.9874 -0.0004 11 8 2.8981 -4.4708 -1.0488 12 7 2.7474 -4.6300 1.1616 13 6 3.3288 -5.9057 1.1535 14 6 3.7176 -6.6277 0.0139 15 6 4.2294 -7.8097 0.4261 16 7 4.1764 -7.8359 1.7745 17 6 4.6311 -8.9329 2.6324 18 6 5.6184 -8.4053 3.6414 19 1 5.8805 -7.3576 3.6436 20 6 6.1871 -9.2602 4.5617 21 7 7.0482 -8.7997 5.4426 22 14 5.7342 -11.0724 4.5575 23 1 6.6634 -11.8127 3.6665 24 1 5.8367 -11.6115 5.9373 25 1 4.3425 -11.2337 4.0651 26 7 3.6046 -6.6336 2.2098 27 6 1.5046 -2.1513 -1.2645 28 6 2.0399 -0.7206 -1.2502 29 1 -0.3633 0.5143 0.8896 30 1 -0.3633 0.5134 -0.8903 31 1 -0.3633 -1.0277 0.0005 32 1 4.1593 1.6362 0.0393 33 1 3.5279 0.6729 -1.3642 34 1 3.1493 2.8800 -2.3669 35 1 3.0138 3.6726 -0.7322 36 1 1.1514 1.5125 -1.9683 37 1 0.6928 2.8601 -0.8418 38 1 1.6957 -0.1936 2.1398 39 1 3.1296 -0.7429 1.2383 40 1 0.4146 -2.1348 1.3671 41 1 1.9361 -2.7034 2.0983 42 1 2.5113 -4.2099 2.0034 43 1 3.6208 -6.2993 -1.0104 44 1 4.6144 -8.5926 -0.2105 45 1 3.7766 -9.3659 3.1524 46 1 5.1101 -9.6978 2.0211 47 1 7.4486 -9.4011 6.0898 48 1 1.9465 -2.6970 -2.0981 49 1 0.4200 -2.1316 -1.3718 50 1 1.6958 -0.1932 -2.1399 51 1 3.1296 -0.7426 -1.2383 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878765608.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:18 Heat of formation + Delta-G solvation = 127.957845 kcal Electronic energy + Delta-G solvation = -30936.477944 eV Core-core repulsion = 26875.472583 eV Total energy + Delta-G solvation = -4061.005360 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.71537 -40.73420 -39.73656 -37.43144 -34.88338 -33.82541 -33.16752 -31.66494 -31.01770 -29.36876 -28.80482 -28.08828 -27.06195 -25.81790 -24.23825 -24.00687 -22.61119 -21.47864 -20.78484 -20.28368 -19.39555 -18.48396 -17.99637 -17.05861 -16.76156 -16.58182 -16.07509 -15.93795 -15.69742 -15.14847 -15.01278 -14.74751 -14.47723 -14.23655 -13.99874 -13.70479 -13.47584 -13.15727 -13.03947 -12.81614 -12.56318 -12.50945 -12.33697 -12.23088 -12.13249 -12.04432 -11.79562 -11.38479 -11.28372 -11.14310 -11.11766 -10.95137 -10.77118 -10.63361 -10.58995 -10.08399 -9.98967 -9.73290 -9.50148 -9.08746 -8.86577 -8.75366 -8.15051 -7.45423 -6.22237 -4.24303 2.28693 2.59797 3.04174 3.15891 3.22562 3.23568 3.35216 3.54516 3.79748 3.99528 4.08083 4.23254 4.24034 4.27770 4.46645 4.55029 4.68011 4.76577 4.80276 4.88457 5.00419 5.05499 5.12941 5.16327 5.19902 5.30240 5.38540 5.39280 5.43704 5.47514 5.50532 5.54411 5.60830 5.63057 5.71409 5.72998 5.75064 5.87151 6.11033 6.12452 6.28233 6.39673 6.47917 6.60976 6.70114 6.74326 6.87554 7.28940 7.44484 7.80946 7.85932 8.35460 8.54581 8.61022 8.87963 9.32790 10.90485 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.022377 B = 0.002006 C = 0.001938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.993432 B =13957.353291 C =14441.747476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.076 3.924 3 N -0.461 5.461 4 C -0.021 4.021 5 C -0.148 4.148 6 C -0.004 4.004 7 C -0.113 4.113 8 C 0.108 3.892 9 N -0.626 5.626 10 C 0.718 3.282 11 O -0.567 6.567 12 N -0.644 5.644 13 C 0.279 3.721 14 C -0.282 4.282 15 C 0.051 3.949 16 N -0.321 5.321 17 C 0.232 3.768 18 C -0.533 4.533 19 H 0.085 0.915 20 C 0.075 3.925 21 N -0.888 5.888 22 Si 0.873 3.127 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.264 1.264 26 N -0.300 5.300 27 C 0.135 3.865 28 C -0.165 4.165 29 H 0.064 0.936 30 H 0.056 0.944 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.073 0.927 35 H 0.090 0.910 36 H 0.072 0.928 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.069 0.931 40 H 0.076 0.924 41 H 0.081 0.919 42 H 0.406 0.594 43 H 0.162 0.838 44 H 0.168 0.832 45 H 0.041 0.959 46 H 0.049 0.951 47 H 0.268 0.732 48 H 0.097 0.903 49 H 0.068 0.932 50 H 0.078 0.922 51 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.181 20.655 -14.605 29.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.014 4.014 3 N -0.182 5.182 4 C -0.150 4.150 5 C -0.186 4.186 6 C -0.133 4.133 7 C -0.152 4.152 8 C -0.016 4.016 9 N -0.364 5.364 10 C 0.419 3.581 11 O -0.443 6.443 12 N -0.296 5.296 13 C 0.024 3.976 14 C -0.314 4.314 15 C -0.099 4.099 16 N -0.102 5.102 17 C 0.113 3.887 18 C -0.571 4.571 19 H 0.103 0.897 20 C -0.128 4.128 21 N -0.525 5.525 22 Si 0.699 3.301 23 H -0.197 1.197 24 H -0.206 1.206 25 H -0.189 1.189 26 N -0.131 5.131 27 C 0.012 3.988 28 C -0.204 4.204 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.086 0.914 32 H 0.101 0.899 33 H 0.106 0.894 34 H 0.092 0.908 35 H 0.108 0.892 36 H 0.090 0.910 37 H 0.100 0.900 38 H 0.103 0.897 39 H 0.088 0.912 40 H 0.094 0.906 41 H 0.100 0.900 42 H 0.244 0.756 43 H 0.179 0.821 44 H 0.186 0.814 45 H 0.059 0.941 46 H 0.066 0.934 47 H 0.078 0.922 48 H 0.115 0.885 49 H 0.086 0.914 50 H 0.096 0.904 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -13.908 20.273 -13.142 27.878 hybrid contribution -0.029 -1.032 -0.894 1.365 sum -13.937 19.242 -14.037 27.596 Atomic orbital electron populations 1.22013 0.93417 1.02508 1.02516 1.21464 0.95768 0.89446 0.94745 1.69212 1.03829 1.10099 1.35101 1.24161 0.94465 0.97913 0.98444 1.23096 0.96362 0.98012 1.01110 1.23771 0.97932 0.97702 0.93900 1.21812 1.01464 0.94086 0.97861 1.21762 1.00657 0.93342 0.85860 1.47194 1.61089 1.20814 1.07352 1.15502 0.78692 0.80386 0.83495 1.90850 1.55837 1.66995 1.30572 1.41597 1.63958 1.15501 1.08511 1.18806 0.99259 0.86284 0.93248 1.21512 1.14553 0.95329 0.99959 1.22542 1.02009 0.99683 0.85641 1.48579 1.44342 1.12958 1.04339 1.20032 0.96034 0.82240 0.90351 1.21112 1.23519 0.98373 1.14143 0.89657 1.24840 0.94493 0.98683 0.94806 1.69870 1.28464 1.35784 1.18409 0.86903 0.79562 0.85346 0.78266 1.19724 1.20559 1.18869 1.77379 1.21235 0.94888 1.19597 1.21328 0.99569 0.91715 0.86197 1.22668 1.02363 0.96589 0.98801 0.91656 0.92459 0.91397 0.89940 0.89377 0.90795 0.89150 0.91009 0.89973 0.89688 0.91231 0.90633 0.90036 0.75617 0.82089 0.81437 0.94094 0.93353 0.92200 0.88488 0.91398 0.90383 0.90013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 7.52 37.16 0.28 -0.61 16 2 C 0.08 0.53 0.49 -131.56 -0.06 0.47 16 3 N -0.46 -3.42 6.16 -228.85 -1.41 -4.83 16 4 C -0.02 -0.15 7.32 -7.55 -0.06 -0.20 16 5 C -0.15 -0.83 8.47 -26.20 -0.22 -1.05 16 6 C 0.00 -0.02 6.23 -7.55 -0.05 -0.07 16 7 C -0.11 -0.90 5.18 -26.61 -0.14 -1.03 16 8 C 0.11 0.89 5.92 -3.71 -0.02 0.87 16 9 N -0.63 -6.74 2.98 -178.76 -0.53 -7.27 16 10 C 0.72 10.88 8.26 -86.92 -0.72 10.16 16 11 O -0.57 -10.24 12.91 5.28 0.07 -10.17 16 12 N -0.64 -10.40 5.36 -15.51 -0.08 -10.49 16 13 C 0.28 5.67 8.11 -154.36 -1.25 4.42 16 14 C -0.28 -5.60 9.61 -39.84 -0.38 -5.99 16 15 C 0.05 0.99 11.44 -17.24 -0.20 0.79 16 16 N -0.32 -7.34 3.67 -62.56 -0.23 -7.57 16 17 C 0.23 5.55 5.33 -5.19 -0.03 5.52 16 18 C -0.53 -15.14 9.79 -34.44 -0.34 -15.48 16 19 H 0.09 2.75 8.06 -52.49 -0.42 2.33 16 20 C 0.08 2.13 5.47 -17.82 -0.10 2.03 16 21 N -0.89 -26.72 13.96 55.43 0.77 -25.94 16 22 Si 0.87 20.21 27.47 -169.99 -4.67 15.54 16 23 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 H -0.26 -5.79 6.54 56.52 0.37 -5.42 16 26 N -0.30 -6.97 12.42 31.44 0.39 -6.58 16 27 C 0.14 1.20 5.95 -3.93 -0.02 1.17 16 28 C -0.17 -1.19 3.51 -26.83 -0.09 -1.29 16 29 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.31 6.76 -51.93 -0.35 -0.04 16 31 H 0.07 0.41 4.99 -51.93 -0.26 0.15 16 32 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.09 0.61 4.67 -51.93 -0.24 0.37 16 34 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.37 5.60 -51.93 -0.29 0.08 16 37 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.08 0.52 6.69 -51.92 -0.35 0.17 16 41 H 0.08 0.67 5.65 -51.93 -0.29 0.38 16 42 H 0.41 5.55 6.31 -40.82 -0.26 5.29 16 43 H 0.16 3.13 5.93 -52.49 -0.31 2.82 16 44 H 0.17 2.59 8.06 -52.49 -0.42 2.17 16 45 H 0.04 0.97 7.20 -51.93 -0.37 0.60 16 46 H 0.05 1.05 7.50 -51.93 -0.39 0.66 16 47 H 0.27 7.46 8.31 -40.82 -0.34 7.13 16 48 H 0.10 1.02 6.99 -51.93 -0.36 0.66 16 49 H 0.07 0.50 6.70 -51.93 -0.35 0.15 16 50 H 0.08 0.46 6.28 -51.93 -0.33 0.14 16 51 H 0.08 0.70 5.98 -51.93 -0.31 0.39 16 LS Contribution 382.95 15.07 5.77 5.77 Total: -1.00 -34.15 382.95 -10.75 -44.91 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: -7.44 Total: 6.92 kcal Atomic # 6 Polarization: 3.11 SS G_CDS: -3.40 Total: -0.29 kcal Atomic # 7 Polarization: -61.58 SS G_CDS: -1.09 Total: -62.67 kcal Atomic # 8 Polarization: -10.24 SS G_CDS: 0.07 Total: -10.17 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -4.67 Total: 15.54 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.15 -10.75 -44.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878765608.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.863 kcal (2) G-P(sol) polarization free energy of solvation -34.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.905 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds