Wall clock time and date at job start Wed Apr 1 2020 04:38:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 N 1.46906 * 109.45990 * 2 1
4 4 C 1.47474 * 110.99812 * 208.53605 * 3 2 1
5 5 C 1.53513 * 87.93310 * 138.70034 * 4 3 2
6 6 C 1.47477 * 110.99668 * 304.50794 * 3 2 1
7 7 C 1.53040 * 109.46050 * 119.96802 * 2 1 3
8 8 C 1.53199 * 109.30938 * 58.66154 * 7 2 1
9 9 N 1.46921 * 108.77831 * 54.62819 * 8 7 2
10 10 C 1.34783 * 120.62560 * 126.37199 * 9 8 7
11 11 O 1.21592 * 119.99571 * 185.41528 * 10 9 8
12 12 N 1.34774 * 120.00171 * 5.41105 * 10 9 8
13 13 C 1.40198 * 119.99925 * 174.76430 * 12 10 9
14 14 C 1.40399 * 125.97262 * 359.97438 * 13 12 10
15 15 C 1.35243 * 107.86639 * 180.19363 * 14 13 12
16 16 N 1.34964 * 107.85722 * 359.63567 * 15 14 13
17 17 C 1.46500 * 125.97529 * 180.11463 * 16 15 14
18 18 C 1.50702 * 109.46897 * 125.26808 * 17 16 15
19 19 H 1.07997 * 119.99824 * 0.02562 * 18 17 16
20 20 C 1.37885 * 119.99952 * 180.02562 * 18 17 16
21 21 N 1.31510 * 120.00183 * 180.02562 * 20 18 17
22 22 Si 1.86799 * 120.00065 * 0.02562 * 20 18 17
23 23 H 1.48500 * 109.47167 * 89.99735 * 22 20 18
24 24 H 1.48493 * 109.47213 * 210.00289 * 22 20 18
25 25 H 1.48503 * 109.47002 * 329.99964 * 22 20 18
26 26 N 1.31207 * 125.97169 * 179.97438 * 13 12 10
27 27 C 1.46923 * 118.74342 * 306.64743 * 9 8 7
28 28 C 1.52762 * 109.00721 * 53.30671 * 27 9 8
29 29 H 1.08994 * 109.47104 * 300.03207 * 1 2 3
30 30 H 1.09003 * 109.46978 * 60.02710 * 1 2 3
31 31 H 1.08999 * 109.46914 * 180.02562 * 1 2 3
32 32 H 1.09003 * 113.47813 * 253.46998 * 4 3 2
33 33 H 1.08999 * 113.48185 * 23.93781 * 4 3 2
34 34 H 1.08994 * 114.17370 * 220.32371 * 5 4 3
35 35 H 1.09004 * 114.16771 * 87.62280 * 5 4 3
36 36 H 1.09005 * 113.47913 * 336.06107 * 6 3 2
37 37 H 1.09004 * 113.47768 * 106.47375 * 6 3 2
38 38 H 1.08993 * 109.49958 * 298.70957 * 7 2 1
39 39 H 1.08998 * 109.50165 * 178.60446 * 7 2 1
40 40 H 1.09010 * 109.58148 * 294.84435 * 8 7 2
41 41 H 1.08997 * 109.70628 * 174.49411 * 8 7 2
42 42 H 0.96999 * 119.99902 * 354.76209 * 12 10 9
43 43 H 1.07993 * 126.06606 * 359.93164 * 14 13 12
44 44 H 1.08000 * 126.07289 * 179.77467 * 15 14 13
45 45 H 1.09000 * 109.47682 * 245.27033 * 17 16 15
46 46 H 1.09000 * 109.47326 * 5.27117 * 17 16 15
47 47 H 0.96998 * 120.00587 * 180.02562 * 21 20 18
48 48 H 1.08995 * 109.58510 * 173.13883 * 27 9 8
49 49 H 1.09001 * 109.58498 * 293.56968 * 27 9 8
50 50 H 1.09000 * 109.56664 * 185.55185 * 28 27 9
51 51 H 1.09004 * 109.36212 * 65.49764 * 28 27 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0194 1.3851 0.0000
4 6 3.3359 1.4805 -0.6577
5 6 2.8468 2.7734 -1.3252
6 6 1.4600 2.1432 -1.1346
7 6 2.0399 -0.7208 1.2500
8 6 1.4996 -2.1543 1.2640
9 7 1.8625 -2.8088 -0.0003
10 6 2.5164 -3.9874 -0.0004
11 8 2.8981 -4.4708 -1.0488
12 7 2.7474 -4.6300 1.1616
13 6 3.3288 -5.9057 1.1535
14 6 3.7176 -6.6277 0.0139
15 6 4.2294 -7.8097 0.4261
16 7 4.1764 -7.8359 1.7745
17 6 4.6311 -8.9329 2.6324
18 6 5.6184 -8.4053 3.6414
19 1 5.8805 -7.3576 3.6436
20 6 6.1871 -9.2602 4.5617
21 7 7.0482 -8.7997 5.4426
22 14 5.7342 -11.0724 4.5575
23 1 6.6634 -11.8127 3.6665
24 1 5.8367 -11.6115 5.9373
25 1 4.3425 -11.2337 4.0651
26 7 3.6046 -6.6336 2.2098
27 6 1.5046 -2.1513 -1.2645
28 6 2.0399 -0.7206 -1.2502
29 1 -0.3633 0.5143 0.8896
30 1 -0.3633 0.5134 -0.8903
31 1 -0.3633 -1.0277 0.0005
32 1 4.1593 1.6362 0.0393
33 1 3.5279 0.6729 -1.3642
34 1 3.1493 2.8800 -2.3669
35 1 3.0138 3.6726 -0.7322
36 1 1.1514 1.5125 -1.9683
37 1 0.6928 2.8601 -0.8418
38 1 1.6957 -0.1936 2.1398
39 1 3.1296 -0.7429 1.2383
40 1 0.4146 -2.1348 1.3671
41 1 1.9361 -2.7034 2.0983
42 1 2.5113 -4.2099 2.0034
43 1 3.6208 -6.2993 -1.0104
44 1 4.6144 -8.5926 -0.2105
45 1 3.7766 -9.3659 3.1524
46 1 5.1101 -9.6978 2.0211
47 1 7.4486 -9.4011 6.0898
48 1 1.9465 -2.6970 -2.0981
49 1 0.4200 -2.1316 -1.3718
50 1 1.6958 -0.1932 -2.1399
51 1 3.1296 -0.7426 -1.2383
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000878765608.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:38:18
Heat of formation + Delta-G solvation = 127.957845 kcal
Electronic energy + Delta-G solvation = -30936.477944 eV
Core-core repulsion = 26875.472583 eV
Total energy + Delta-G solvation = -4061.005360 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.206 amu
Computer time = 1.01 seconds
Orbital eigenvalues (eV)
-41.71537 -40.73420 -39.73656 -37.43144 -34.88338 -33.82541 -33.16752 -31.66494
-31.01770 -29.36876 -28.80482 -28.08828 -27.06195 -25.81790 -24.23825 -24.00687
-22.61119 -21.47864 -20.78484 -20.28368 -19.39555 -18.48396 -17.99637 -17.05861
-16.76156 -16.58182 -16.07509 -15.93795 -15.69742 -15.14847 -15.01278 -14.74751
-14.47723 -14.23655 -13.99874 -13.70479 -13.47584 -13.15727 -13.03947 -12.81614
-12.56318 -12.50945 -12.33697 -12.23088 -12.13249 -12.04432 -11.79562 -11.38479
-11.28372 -11.14310 -11.11766 -10.95137 -10.77118 -10.63361 -10.58995 -10.08399
-9.98967 -9.73290 -9.50148 -9.08746 -8.86577 -8.75366 -8.15051 -7.45423
-6.22237 -4.24303 2.28693 2.59797 3.04174 3.15891 3.22562 3.23568
3.35216 3.54516 3.79748 3.99528 4.08083 4.23254 4.24034 4.27770
4.46645 4.55029 4.68011 4.76577 4.80276 4.88457 5.00419 5.05499
5.12941 5.16327 5.19902 5.30240 5.38540 5.39280 5.43704 5.47514
5.50532 5.54411 5.60830 5.63057 5.71409 5.72998 5.75064 5.87151
6.11033 6.12452 6.28233 6.39673 6.47917 6.60976 6.70114 6.74326
6.87554 7.28940 7.44484 7.80946 7.85932 8.35460 8.54581 8.61022
8.87963 9.32790 10.90485
Molecular weight = 347.21amu
Principal moments of inertia in cm(-1)
A = 0.022377 B = 0.002006 C = 0.001938
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1250.993432 B =13957.353291 C =14441.747476
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C 0.076 3.924
3 N -0.461 5.461
4 C -0.021 4.021
5 C -0.148 4.148
6 C -0.004 4.004
7 C -0.113 4.113
8 C 0.108 3.892
9 N -0.626 5.626
10 C 0.718 3.282
11 O -0.567 6.567
12 N -0.644 5.644
13 C 0.279 3.721
14 C -0.282 4.282
15 C 0.051 3.949
16 N -0.321 5.321
17 C 0.232 3.768
18 C -0.533 4.533
19 H 0.085 0.915
20 C 0.075 3.925
21 N -0.888 5.888
22 Si 0.873 3.127
23 H -0.272 1.272
24 H -0.280 1.280
25 H -0.264 1.264
26 N -0.300 5.300
27 C 0.135 3.865
28 C -0.165 4.165
29 H 0.064 0.936
30 H 0.056 0.944
31 H 0.067 0.933
32 H 0.082 0.918
33 H 0.088 0.912
34 H 0.073 0.927
35 H 0.090 0.910
36 H 0.072 0.928
37 H 0.082 0.918
38 H 0.085 0.915
39 H 0.069 0.931
40 H 0.076 0.924
41 H 0.081 0.919
42 H 0.406 0.594
43 H 0.162 0.838
44 H 0.168 0.832
45 H 0.041 0.959
46 H 0.049 0.951
47 H 0.268 0.732
48 H 0.097 0.903
49 H 0.068 0.932
50 H 0.078 0.922
51 H 0.082 0.918
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.181 20.655 -14.605 29.001
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.205 4.205
2 C -0.014 4.014
3 N -0.182 5.182
4 C -0.150 4.150
5 C -0.186 4.186
6 C -0.133 4.133
7 C -0.152 4.152
8 C -0.016 4.016
9 N -0.364 5.364
10 C 0.419 3.581
11 O -0.443 6.443
12 N -0.296 5.296
13 C 0.024 3.976
14 C -0.314 4.314
15 C -0.099 4.099
16 N -0.102 5.102
17 C 0.113 3.887
18 C -0.571 4.571
19 H 0.103 0.897
20 C -0.128 4.128
21 N -0.525 5.525
22 Si 0.699 3.301
23 H -0.197 1.197
24 H -0.206 1.206
25 H -0.189 1.189
26 N -0.131 5.131
27 C 0.012 3.988
28 C -0.204 4.204
29 H 0.083 0.917
30 H 0.075 0.925
31 H 0.086 0.914
32 H 0.101 0.899
33 H 0.106 0.894
34 H 0.092 0.908
35 H 0.108 0.892
36 H 0.090 0.910
37 H 0.100 0.900
38 H 0.103 0.897
39 H 0.088 0.912
40 H 0.094 0.906
41 H 0.100 0.900
42 H 0.244 0.756
43 H 0.179 0.821
44 H 0.186 0.814
45 H 0.059 0.941
46 H 0.066 0.934
47 H 0.078 0.922
48 H 0.115 0.885
49 H 0.086 0.914
50 H 0.096 0.904
51 H 0.100 0.900
Dipole moment (debyes) X Y Z Total
from point charges -13.908 20.273 -13.142 27.878
hybrid contribution -0.029 -1.032 -0.894 1.365
sum -13.937 19.242 -14.037 27.596
Atomic orbital electron populations
1.22013 0.93417 1.02508 1.02516 1.21464 0.95768 0.89446 0.94745
1.69212 1.03829 1.10099 1.35101 1.24161 0.94465 0.97913 0.98444
1.23096 0.96362 0.98012 1.01110 1.23771 0.97932 0.97702 0.93900
1.21812 1.01464 0.94086 0.97861 1.21762 1.00657 0.93342 0.85860
1.47194 1.61089 1.20814 1.07352 1.15502 0.78692 0.80386 0.83495
1.90850 1.55837 1.66995 1.30572 1.41597 1.63958 1.15501 1.08511
1.18806 0.99259 0.86284 0.93248 1.21512 1.14553 0.95329 0.99959
1.22542 1.02009 0.99683 0.85641 1.48579 1.44342 1.12958 1.04339
1.20032 0.96034 0.82240 0.90351 1.21112 1.23519 0.98373 1.14143
0.89657 1.24840 0.94493 0.98683 0.94806 1.69870 1.28464 1.35784
1.18409 0.86903 0.79562 0.85346 0.78266 1.19724 1.20559 1.18869
1.77379 1.21235 0.94888 1.19597 1.21328 0.99569 0.91715 0.86197
1.22668 1.02363 0.96589 0.98801 0.91656 0.92459 0.91397 0.89940
0.89377 0.90795 0.89150 0.91009 0.89973 0.89688 0.91231 0.90633
0.90036 0.75617 0.82089 0.81437 0.94094 0.93353 0.92200 0.88488
0.91398 0.90383 0.90013
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.89 7.52 37.16 0.28 -0.61 16
2 C 0.08 0.53 0.49 -131.56 -0.06 0.47 16
3 N -0.46 -3.42 6.16 -228.85 -1.41 -4.83 16
4 C -0.02 -0.15 7.32 -7.55 -0.06 -0.20 16
5 C -0.15 -0.83 8.47 -26.20 -0.22 -1.05 16
6 C 0.00 -0.02 6.23 -7.55 -0.05 -0.07 16
7 C -0.11 -0.90 5.18 -26.61 -0.14 -1.03 16
8 C 0.11 0.89 5.92 -3.71 -0.02 0.87 16
9 N -0.63 -6.74 2.98 -178.76 -0.53 -7.27 16
10 C 0.72 10.88 8.26 -86.92 -0.72 10.16 16
11 O -0.57 -10.24 12.91 5.28 0.07 -10.17 16
12 N -0.64 -10.40 5.36 -15.51 -0.08 -10.49 16
13 C 0.28 5.67 8.11 -154.36 -1.25 4.42 16
14 C -0.28 -5.60 9.61 -39.84 -0.38 -5.99 16
15 C 0.05 0.99 11.44 -17.24 -0.20 0.79 16
16 N -0.32 -7.34 3.67 -62.56 -0.23 -7.57 16
17 C 0.23 5.55 5.33 -5.19 -0.03 5.52 16
18 C -0.53 -15.14 9.79 -34.44 -0.34 -15.48 16
19 H 0.09 2.75 8.06 -52.49 -0.42 2.33 16
20 C 0.08 2.13 5.47 -17.82 -0.10 2.03 16
21 N -0.89 -26.72 13.96 55.43 0.77 -25.94 16
22 Si 0.87 20.21 27.47 -169.99 -4.67 15.54 16
23 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16
24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16
25 H -0.26 -5.79 6.54 56.52 0.37 -5.42 16
26 N -0.30 -6.97 12.42 31.44 0.39 -6.58 16
27 C 0.14 1.20 5.95 -3.93 -0.02 1.17 16
28 C -0.17 -1.19 3.51 -26.83 -0.09 -1.29 16
29 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16
30 H 0.06 0.31 6.76 -51.93 -0.35 -0.04 16
31 H 0.07 0.41 4.99 -51.93 -0.26 0.15 16
32 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16
33 H 0.09 0.61 4.67 -51.93 -0.24 0.37 16
34 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16
35 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16
36 H 0.07 0.37 5.60 -51.93 -0.29 0.08 16
37 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16
38 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16
39 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16
40 H 0.08 0.52 6.69 -51.92 -0.35 0.17 16
41 H 0.08 0.67 5.65 -51.93 -0.29 0.38 16
42 H 0.41 5.55 6.31 -40.82 -0.26 5.29 16
43 H 0.16 3.13 5.93 -52.49 -0.31 2.82 16
44 H 0.17 2.59 8.06 -52.49 -0.42 2.17 16
45 H 0.04 0.97 7.20 -51.93 -0.37 0.60 16
46 H 0.05 1.05 7.50 -51.93 -0.39 0.66 16
47 H 0.27 7.46 8.31 -40.82 -0.34 7.13 16
48 H 0.10 1.02 6.99 -51.93 -0.36 0.66 16
49 H 0.07 0.50 6.70 -51.93 -0.35 0.15 16
50 H 0.08 0.46 6.28 -51.93 -0.33 0.14 16
51 H 0.08 0.70 5.98 -51.93 -0.31 0.39 16
LS Contribution 382.95 15.07 5.77 5.77
Total: -1.00 -34.15 382.95 -10.75 -44.91
By element:
Atomic # 1 Polarization: 14.36 SS G_CDS: -7.44 Total: 6.92 kcal
Atomic # 6 Polarization: 3.11 SS G_CDS: -3.40 Total: -0.29 kcal
Atomic # 7 Polarization: -61.58 SS G_CDS: -1.09 Total: -62.67 kcal
Atomic # 8 Polarization: -10.24 SS G_CDS: 0.07 Total: -10.17 kcal
Atomic # 14 Polarization: 20.21 SS G_CDS: -4.67 Total: 15.54 kcal
Total LS contribution 5.77 Total: 5.77 kcal
Total: -34.15 -10.75 -44.91 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000878765608.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 172.863 kcal
(2) G-P(sol) polarization free energy of solvation -34.150 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.713 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.755 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.905 kcal
(6) G-S(sol) free energy of system = (1) + (5) 127.958 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.01 seconds