Wall clock time and date at job start Wed Apr 1 2020 04:38:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46906 * 109.45990 * 2 1 4 4 C 1.47474 * 110.99812 * 208.53605 * 3 2 1 5 5 C 1.53513 * 87.93310 * 138.70034 * 4 3 2 6 6 C 1.47477 * 110.99668 * 304.50794 * 3 2 1 7 7 C 1.53040 * 109.46050 * 119.96802 * 2 1 3 8 8 C 1.53199 * 109.30938 * 58.66154 * 7 2 1 9 9 N 1.46921 * 108.77831 * 54.62819 * 8 7 2 10 10 C 1.34783 * 120.62560 * 126.37199 * 9 8 7 11 11 O 1.21592 * 119.99571 * 185.41528 * 10 9 8 12 12 N 1.34774 * 120.00171 * 5.41105 * 10 9 8 13 13 C 1.40198 * 119.99925 * 174.76430 * 12 10 9 14 14 C 1.40399 * 125.97262 * 359.97438 * 13 12 10 15 15 C 1.35243 * 107.86639 * 180.19363 * 14 13 12 16 16 N 1.34964 * 107.85722 * 359.63567 * 15 14 13 17 17 C 1.46500 * 125.97529 * 180.11463 * 16 15 14 18 18 C 1.50702 * 109.46897 * 125.26808 * 17 16 15 19 19 H 1.07997 * 119.99824 * 0.02562 * 18 17 16 20 20 C 1.37885 * 119.99952 * 180.02562 * 18 17 16 21 21 N 1.31510 * 120.00183 * 180.02562 * 20 18 17 22 22 Si 1.86799 * 120.00065 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47167 * 89.99735 * 22 20 18 24 24 H 1.48493 * 109.47213 * 210.00289 * 22 20 18 25 25 H 1.48503 * 109.47002 * 329.99964 * 22 20 18 26 26 N 1.31207 * 125.97169 * 179.97438 * 13 12 10 27 27 C 1.46923 * 118.74342 * 306.64743 * 9 8 7 28 28 C 1.52762 * 109.00721 * 53.30671 * 27 9 8 29 29 H 1.08994 * 109.47104 * 300.03207 * 1 2 3 30 30 H 1.09003 * 109.46978 * 60.02710 * 1 2 3 31 31 H 1.08999 * 109.46914 * 180.02562 * 1 2 3 32 32 H 1.09003 * 113.47813 * 253.46998 * 4 3 2 33 33 H 1.08999 * 113.48185 * 23.93781 * 4 3 2 34 34 H 1.08994 * 114.17370 * 220.32371 * 5 4 3 35 35 H 1.09004 * 114.16771 * 87.62280 * 5 4 3 36 36 H 1.09005 * 113.47913 * 336.06107 * 6 3 2 37 37 H 1.09004 * 113.47768 * 106.47375 * 6 3 2 38 38 H 1.08993 * 109.49958 * 298.70957 * 7 2 1 39 39 H 1.08998 * 109.50165 * 178.60446 * 7 2 1 40 40 H 1.09010 * 109.58148 * 294.84435 * 8 7 2 41 41 H 1.08997 * 109.70628 * 174.49411 * 8 7 2 42 42 H 0.96999 * 119.99902 * 354.76209 * 12 10 9 43 43 H 1.07993 * 126.06606 * 359.93164 * 14 13 12 44 44 H 1.08000 * 126.07289 * 179.77467 * 15 14 13 45 45 H 1.09000 * 109.47682 * 245.27033 * 17 16 15 46 46 H 1.09000 * 109.47326 * 5.27117 * 17 16 15 47 47 H 0.96998 * 120.00587 * 180.02562 * 21 20 18 48 48 H 1.08995 * 109.58510 * 173.13883 * 27 9 8 49 49 H 1.09001 * 109.58498 * 293.56968 * 27 9 8 50 50 H 1.09000 * 109.56664 * 185.55185 * 28 27 9 51 51 H 1.09004 * 109.36212 * 65.49764 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0194 1.3851 0.0000 4 6 3.3359 1.4805 -0.6577 5 6 2.8468 2.7734 -1.3252 6 6 1.4600 2.1432 -1.1346 7 6 2.0399 -0.7208 1.2500 8 6 1.4996 -2.1543 1.2640 9 7 1.8625 -2.8088 -0.0003 10 6 2.5164 -3.9874 -0.0004 11 8 2.8981 -4.4708 -1.0488 12 7 2.7474 -4.6300 1.1616 13 6 3.3288 -5.9057 1.1535 14 6 3.7176 -6.6277 0.0139 15 6 4.2294 -7.8097 0.4261 16 7 4.1764 -7.8359 1.7745 17 6 4.6311 -8.9329 2.6324 18 6 5.6184 -8.4053 3.6414 19 1 5.8805 -7.3576 3.6436 20 6 6.1871 -9.2602 4.5617 21 7 7.0482 -8.7997 5.4426 22 14 5.7342 -11.0724 4.5575 23 1 6.6634 -11.8127 3.6665 24 1 5.8367 -11.6115 5.9373 25 1 4.3425 -11.2337 4.0651 26 7 3.6046 -6.6336 2.2098 27 6 1.5046 -2.1513 -1.2645 28 6 2.0399 -0.7206 -1.2502 29 1 -0.3633 0.5143 0.8896 30 1 -0.3633 0.5134 -0.8903 31 1 -0.3633 -1.0277 0.0005 32 1 4.1593 1.6362 0.0393 33 1 3.5279 0.6729 -1.3642 34 1 3.1493 2.8800 -2.3669 35 1 3.0138 3.6726 -0.7322 36 1 1.1514 1.5125 -1.9683 37 1 0.6928 2.8601 -0.8418 38 1 1.6957 -0.1936 2.1398 39 1 3.1296 -0.7429 1.2383 40 1 0.4146 -2.1348 1.3671 41 1 1.9361 -2.7034 2.0983 42 1 2.5113 -4.2099 2.0034 43 1 3.6208 -6.2993 -1.0104 44 1 4.6144 -8.5926 -0.2105 45 1 3.7766 -9.3659 3.1524 46 1 5.1101 -9.6978 2.0211 47 1 7.4486 -9.4011 6.0898 48 1 1.9465 -2.6970 -2.0981 49 1 0.4200 -2.1316 -1.3718 50 1 1.6958 -0.1932 -2.1399 51 1 3.1296 -0.7426 -1.2383 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878765608.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:16 Heat of formation + Delta-G solvation = 103.731434 kcal Electronic energy + Delta-G solvation = -30937.528480 eV Core-core repulsion = 26875.472583 eV Total energy + Delta-G solvation = -4062.055896 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.51348 -42.04369 -40.90223 -38.28884 -36.32070 -35.29458 -34.47914 -33.07040 -32.15246 -30.95777 -29.59674 -28.86619 -28.53318 -26.38559 -25.25388 -24.71731 -24.26587 -22.71749 -21.92714 -21.40576 -20.56951 -19.52274 -19.09868 -18.69395 -18.13357 -17.43776 -17.25291 -16.89409 -16.55209 -16.39408 -16.07931 -15.78799 -15.51114 -15.46648 -15.03149 -14.84801 -14.78081 -14.37444 -14.21732 -13.96784 -13.85454 -13.65817 -13.41297 -13.16608 -12.97518 -12.81384 -12.62814 -12.52936 -12.37904 -12.28962 -12.02781 -11.83194 -11.82478 -11.71216 -11.62964 -11.53287 -11.47924 -11.20502 -11.02862 -10.86691 -9.88714 -9.69728 -9.61673 -9.02912 -8.37186 -6.47436 1.01379 1.10597 1.36844 1.40166 1.49837 1.65689 1.99225 2.29322 2.35466 2.76625 2.95331 3.01334 3.54990 3.63434 3.68860 3.85903 3.93506 3.94811 4.02873 4.17340 4.19644 4.21668 4.29961 4.41935 4.50501 4.58485 4.61654 4.63142 4.71647 4.77359 4.80487 4.84524 4.87840 4.90840 4.91468 4.93222 5.00204 5.05346 5.08107 5.11172 5.15413 5.23806 5.24589 5.34295 5.52535 5.56003 5.71322 5.90507 6.01748 6.17767 6.41448 6.53884 6.60349 7.06324 7.15485 7.33791 8.79961 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.022377 B = 0.002006 C = 0.001938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.993432 B =13957.353291 C =14441.747476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.078 3.922 3 N -0.475 5.475 4 C -0.027 4.027 5 C -0.142 4.142 6 C -0.001 4.001 7 C -0.110 4.110 8 C 0.105 3.895 9 N -0.614 5.614 10 C 0.714 3.286 11 O -0.598 6.598 12 N -0.640 5.640 13 C 0.283 3.717 14 C -0.293 4.293 15 C 0.062 3.938 16 N -0.345 5.345 17 C 0.240 3.760 18 C -0.546 4.546 19 H 0.025 0.975 20 C 0.013 3.987 21 N -0.943 5.943 22 Si 0.957 3.043 23 H -0.253 1.253 24 H -0.281 1.281 25 H -0.239 1.239 26 N -0.350 5.350 27 C 0.132 3.868 28 C -0.156 4.156 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.091 0.909 39 H 0.048 0.952 40 H 0.100 0.900 41 H 0.078 0.922 42 H 0.416 0.584 43 H 0.167 0.833 44 H 0.212 0.788 45 H 0.046 0.954 46 H 0.082 0.918 47 H 0.272 0.728 48 H 0.080 0.920 49 H 0.092 0.908 50 H 0.098 0.902 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.254 20.060 -16.331 30.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.012 4.012 3 N -0.197 5.197 4 C -0.156 4.156 5 C -0.179 4.179 6 C -0.130 4.130 7 C -0.148 4.148 8 C -0.018 4.018 9 N -0.351 5.351 10 C 0.415 3.585 11 O -0.477 6.477 12 N -0.294 5.294 13 C 0.028 3.972 14 C -0.325 4.325 15 C -0.086 4.086 16 N -0.127 5.127 17 C 0.120 3.880 18 C -0.584 4.584 19 H 0.043 0.957 20 C -0.186 4.186 21 N -0.581 5.581 22 Si 0.778 3.222 23 H -0.177 1.177 24 H -0.206 1.206 25 H -0.162 1.162 26 N -0.181 5.181 27 C 0.010 3.990 28 C -0.195 4.195 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.106 0.894 34 H 0.104 0.896 35 H 0.107 0.893 36 H 0.100 0.900 37 H 0.105 0.895 38 H 0.110 0.890 39 H 0.067 0.933 40 H 0.118 0.882 41 H 0.097 0.903 42 H 0.255 0.745 43 H 0.184 0.816 44 H 0.228 0.772 45 H 0.064 0.936 46 H 0.100 0.900 47 H 0.081 0.919 48 H 0.098 0.902 49 H 0.110 0.890 50 H 0.116 0.884 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -16.021 19.755 -14.886 29.471 hybrid contribution 0.627 -0.610 -0.387 0.956 sum -15.394 19.145 -15.273 28.927 Atomic orbital electron populations 1.21981 0.92138 1.02856 1.03035 1.21444 0.96614 0.89277 0.93854 1.69198 1.04128 1.10246 1.36134 1.24182 0.94134 0.98894 0.98344 1.23076 0.96090 0.97142 1.01620 1.23813 0.98002 0.97610 0.93550 1.21764 1.00174 0.93959 0.98929 1.21966 1.02100 0.93199 0.84520 1.47286 1.59423 1.19290 1.09139 1.15690 0.78861 0.81368 0.82593 1.90813 1.57237 1.68202 1.31407 1.41659 1.63727 1.14398 1.09623 1.19145 0.97933 0.87250 0.92903 1.21703 1.15069 0.95667 1.00020 1.23240 1.00262 1.00443 0.84664 1.48487 1.45812 1.12994 1.05367 1.19887 0.94983 0.83041 0.90099 1.21228 1.25076 0.95908 1.16226 0.95677 1.25948 0.93898 1.04997 0.93756 1.70050 1.30172 1.38277 1.19642 0.85596 0.80792 0.77256 0.78606 1.17734 1.20642 1.16183 1.77296 1.23425 0.96056 1.21325 1.21525 1.00876 0.92027 0.84585 1.22595 1.01322 0.95683 0.99878 0.91762 0.91395 0.91051 0.91263 0.89378 0.89576 0.89316 0.89954 0.89528 0.89028 0.93283 0.88193 0.90343 0.74495 0.81582 0.77174 0.93627 0.89997 0.91892 0.90180 0.89028 0.88415 0.91629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 7.52 71.98 0.54 -0.81 16 2 C 0.08 0.98 0.49 3.55 0.00 0.98 16 3 N -0.48 -6.43 6.16 -877.94 -5.41 -11.84 16 4 C -0.03 -0.36 7.32 83.57 0.61 0.25 16 5 C -0.14 -1.38 8.47 30.94 0.26 -1.12 16 6 C 0.00 -0.01 6.23 83.58 0.52 0.51 16 7 C -0.11 -1.65 5.18 30.67 0.16 -1.49 16 8 C 0.10 1.63 5.92 86.37 0.51 2.14 16 9 N -0.61 -12.77 2.98 -837.73 -2.50 -15.27 16 10 C 0.71 21.65 8.26 179.05 1.48 23.12 16 11 O -0.60 -21.73 12.91 -4.01 -0.05 -21.79 16 12 N -0.64 -21.03 5.36 -321.23 -1.72 -22.75 16 13 C 0.28 11.72 8.11 133.31 1.08 12.81 16 14 C -0.29 -11.56 9.61 22.11 0.21 -11.35 16 15 C 0.06 2.34 11.44 83.52 0.96 3.29 16 16 N -0.34 -15.73 3.67 -351.84 -1.29 -17.02 16 17 C 0.24 11.21 5.33 85.63 0.46 11.67 16 18 C -0.55 -31.88 9.79 25.60 0.25 -31.63 16 19 H 0.02 1.71 8.06 -2.91 -0.02 1.69 16 20 C 0.01 0.72 5.47 84.66 0.46 1.19 16 21 N -0.94 -58.53 13.96 21.45 0.30 -58.23 16 22 Si 0.96 40.94 27.47 68.60 1.88 42.82 16 23 H -0.25 -10.06 7.11 99.48 0.71 -9.35 16 24 H -0.28 -11.98 7.11 99.48 0.71 -11.28 16 25 H -0.24 -9.19 6.54 99.48 0.65 -8.54 16 26 N -0.35 -16.67 12.42 -54.44 -0.68 -17.35 16 27 C 0.13 2.16 5.95 86.22 0.51 2.67 16 28 C -0.16 -2.03 3.51 30.53 0.11 -1.92 16 29 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.07 0.52 6.76 -2.39 -0.02 0.51 16 31 H 0.07 0.63 4.99 -2.39 -0.01 0.62 16 32 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.09 1.17 4.67 -2.39 -0.01 1.16 16 34 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.09 0.90 8.14 -2.38 -0.02 0.88 16 36 H 0.08 0.61 5.60 -2.38 -0.01 0.60 16 37 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.10 1.13 6.69 -2.38 -0.02 1.12 16 41 H 0.08 1.28 5.65 -2.39 -0.01 1.26 16 42 H 0.42 11.62 6.31 -92.71 -0.59 11.03 16 43 H 0.17 6.39 5.93 -2.91 -0.02 6.38 16 44 H 0.21 5.80 8.06 -2.91 -0.02 5.78 16 45 H 0.05 2.08 7.20 -2.39 -0.02 2.07 16 46 H 0.08 3.28 7.50 -2.39 -0.02 3.26 16 47 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 48 H 0.08 1.63 6.99 -2.39 -0.02 1.62 16 49 H 0.09 1.11 6.70 -2.39 -0.02 1.09 16 50 H 0.10 0.91 6.28 -2.39 -0.01 0.90 16 51 H 0.07 1.10 5.98 -2.38 -0.01 1.08 16 Total: -1.00 -78.21 382.95 -1.01 -79.21 By element: Atomic # 1 Polarization: 31.58 SS G_CDS: 0.33 Total: 31.91 kcal Atomic # 6 Polarization: 2.17 SS G_CDS: 8.13 Total: 10.30 kcal Atomic # 7 Polarization: -131.17 SS G_CDS: -11.29 Total: -142.46 kcal Atomic # 8 Polarization: -21.73 SS G_CDS: -0.05 Total: -21.79 kcal Atomic # 14 Polarization: 40.94 SS G_CDS: 1.88 Total: 42.82 kcal Total: -78.21 -1.01 -79.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878765608.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.943 kcal (2) G-P(sol) polarization free energy of solvation -78.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds